mRNA_Ecto-sp9_F_contig1060.548.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1060.548.1
Unique NamemRNA_Ecto-sp9_F_contig1060.548.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI)

HSP 1 Score: 585 bits (1508), Expect = 4.460e-210
Identity = 309/326 (94.79%), Postives = 312/326 (95.71%), Query Frame = 1 
Query:    1 MLLVRGLSLLAVGLAAAPTGSALVPPTPLPRTTAGGHAAATARGEHVRQGSSCLLQTQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALTATVRRDVEAKAHKAAHAA 978
            MLLVRGLSLLAVGLAAAPTG ALVPPTPLPRTTAGGHAAATARG+HVRQ         IASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLK+NPIRAYGESVVVLFQTLVMVGLLWRFG EEEVAVSDGGGDEEALVTK TKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNY+LGATSNA ILAQIYLYRALTATV RDVEAKAHKAAHAA
Sbjct:    1 MLLVRGLSLLAVGLAAAPTGCALVPPTPLPRTTAGGHAAATARGKHVRQ---------IASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGGGDEEALVTKSTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYVLGATSNATILAQIYLYRALTATVGRDVEAKAHKAAHAA 317
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 1.370e-154
Identity = 230/253 (90.91%), Postives = 235/253 (92.89%), Query Frame = 1 
Query:  229 MNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEE---ALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALTATVRRDVEAKAHKAAHAA 978
            MN QLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG        ALVTK  KKVKPAGGGP+GRTAI  GSVAASVLCVLYLPERLWGLLV+VSTPTILAVQLPQIWKNWRQKHTGELA+LTVLLAF GSS+RIATTIADLGGDPWLLFNYILGATSNA ILAQIYLYRALTA VRRDV+AKA KA HAA
Sbjct:    1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGXXXXXXXXALVTKSIKKVKPAGGGPLGRTAIAVGSVAASVLCVLYLPERLWGLLVVVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIADLGGDPWLLFNYILGATSNATILAQIYLYRALTAKVRRDVKAKADKATHAA 253
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 6.760e-38
Identity = 88/226 (38.94%), Postives = 123/226 (54.42%), Query Frame = 1 
Query:  253 RVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCV--LYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALT 924
            ++AG GII GS+ +K PQI R+  A+S++GL+  + Y +V L +  VIYH  K  P  AYGE+  +L Q L++V L+WR+                                P+   A+ A +     LCV    LP+R   LLV+ STP IL V +PQI  N RQ HTG+++ +TV L   GS+IR+ATT+ ++G D  LL NY LG   N  ++AQ YL R  T
Sbjct:   51 KLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAP-----------------------------PMKHRAMAAMTATFVALCVGTYSLPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATTLIEIGVDRALLLNYGLGTVLNGVLMAQWYLMRDAT 247
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPT2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.730e-32
Identity = 78/222 (35.14%), Postives = 122/222 (54.95%), Query Frame = 1 
Query:  247 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLY 912
            + ++ GY +I GSL +K PQI+++  AKS+ GLAP+SIY+D+ ++  + +YH++  +P  AYGE + +L Q +V+V LLW +                        K +P+  G VG  A+  G+      C     E L  LL   + P I+  ++PQI  N    HTG+LA +T +L FVG++IRI TTI ++G D  LL+ + L +  N  +  Q+ LY
Sbjct:   30 IAKLLGYLLILGSLTVKAPQISKIMVAKSVDGLAPSSIYSDLIIYIVNAVYHIVSGSPFSAYGEIMTILVQNIVIVLLLWYY-----------------------MKNRPSALGIVGLMAVFLGTTVG---CATLKMEHLM-LLPYSNLPLIVVAKVPQIMINHDNGHTGQLASVTTMLNFVGATIRILTTIQEVGWDLGLLWMHGLSSFLNGVLALQVVLY 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4L1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.470e-29
Identity = 83/231 (35.93%), Postives = 122/231 (52.81%), Query Frame = 1 
Query:  268 GIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPE-RLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGG-DPWLLFNYILGATSNAAILAQIYLYRALTATVRRDVEAK 954
            GIIAG+  LK PQ+  +   +S+ GL+P SIYA++      V+Y++    P   YGE+V VL Q L+++ LLWR+ +                 T  + ++ P+         +  G+V  S      LPE + W  +V  + P ++A++LPQI  NW  +HTG+LA LT L+A  GS  R+ TT+ +LG  DP LL  Y L  + NA ++AQI  YR  TA      E K
Sbjct:   19 GIIAGACFLKIPQLLTILKHQSVAGLSPLSIYAEITSGLGMVLYNLHANTPFLYYGETVAVLLQNLLLLLLLWRYASPP---------------TSLSDRLVPSA------IVLALGTVGWS------LPEHKEW--IVRATLPLVVAMRLPQILTNWSNRHTGQLAALTALMALAGSLARLFTTLKELGPKDPQLLV-YALSFSLNAVVMAQIVWYRQATAEAMESKERK 219
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSU5_HEMAN)

HSP 1 Score: 122 bits (305), Expect = 3.240e-29
Identity = 79/231 (34.20%), Postives = 122/231 (52.81%), Query Frame = 1 
Query:  247 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLY--LPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALTATV 933
            L +V G  I+ GS  LK PQI ++  + S+ GL+P ++Y ++ L+++ VIYH+L+  P+  YGE VV++FQ + +V L+W +                                PV    +V  ++   ++C++   LP+RL  LL  VS P I+   +PQI  N  Q+HTG LA+ T +L   GS++R  TTIA++GGD  LL +Y   A  N  ++ Q   YR  T  V
Sbjct:   37 LSKVLGTMIVMGSFFLKMPQIVKIIASGSVAGLSPEAVYYELPLYSSGVIYHLLQGLPLSTYGEMVVIMFQNITIVLLMWWYQHP-----------------------------PVQMREMVTKTLQFLLICLVQFNLPKRLRPLLSYVSIPLIITSCVPQILANQVQRHTGTLAISTCVLKTTGSAMRFFTTIAEIGGDLGLLASYGTSAFLNGWMVVQGVRYREKTQQV 238
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=11 Tax=Phytophthora TaxID=4783 RepID=D0NCC3_PHYIT)

HSP 1 Score: 121 bits (304), Expect = 7.580e-29
Identity = 74/216 (34.26%), Postives = 117/216 (54.17%), Query Frame = 1 
Query:  265 YGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLY 912
            Y II GSL LK PQI ++  AK + GL P++ Y +V L+ +S IY+VL+  P+  +GE+VV+L Q +++V LLW F T + +AVS                  P  G  +   AI AG  +        +P+    LL     P  +  ++PQI  N++Q HTG+LA++T++L F GS  R+ TT+ + G DP  +  + +    N  ++ Q+ L+
Sbjct:   67 YAIITGSLILKLPQILKILSAKDVTGLTPSAFYMEVVLYLSSTIYNVLRGYPLSTWGENVVILAQNIILVLLLWSFYTPK-IAVS------------------PRFGLVLAFAAIAAGMFS--------IPDEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLALITLVLNFAGSIARLFTTMQETG-DPVQVAGFGVAILLNGTLVLQVLLF 254
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.530e-28
Identity = 75/238 (31.51%), Postives = 123/238 (51.68%), Query Frame = 1 
Query:  253 RVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLY-RALTATVRRDVEAKAHK 963
            +V GY II GS  LK PQI ++  A ++ GL P+S Y +V  F  SV+Y+V++  PI  +GES+ +L Q +++V +LW +                           PA    +G    VA         +L+LP     +L   S P  +  ++PQI+ N++Q HTG+LA +T+ L F GS+ R+ TT+ + G D  +L  +++    N  ++AQI +Y +A  A + +  +A+  K
Sbjct:   42 KVLGYLIILGSFILKVPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVIRGYPISTWGESLTILIQNIILVAMLWVYSKA------------------------PASTQLLGVATFVALGAG-----MLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETG-DQVVLLGFLISMLLNGTLIAQILIYWKATDAALAKAKDAEKKK 249
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQX7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.880e-28
Identity = 76/238 (31.93%), Postives = 124/238 (52.10%), Query Frame = 1 
Query:  253 RVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALTATVRRDVEAKAHKA 966
            ++  YGII GSL LK PQI ++  AK + GL P++ Y +  L+ +S IY++L+  P+  +GE++V+L Q +++V LLW F                      T K+      PV          AA  + +L +PE    LL     P  +  ++PQI  N++Q HTG+LA++T++L F GS  R+ TT+ + G DP  +  + +G   N  ++ Q+ ++    AT +  V+A   KA
Sbjct:   63 KMLSYGIIMGSLILKLPQILKIVAAKDVTGLTPSAFYMEAVLYLSSTIYNLLRGYPLTTWGENLVILAQNILLVLLLWMF---------------------YTPKI------PVSTRFGFVLVFAAMAMGMLSIPEEFQWLLASAGIPVSIVARIPQILSNFKQGHTGQLALVTLVLNFAGSVARLFTTMQETG-DPVQVVGFGVGILLNGTLVVQVLMFWG--ATNKALVQASKKKA 270
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Match: Mannose-P-dolichol (utilization defect 1 protein homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E696_BRELC)

HSP 1 Score: 119 bits (298), Expect = 5.470e-28
Identity = 74/237 (31.22%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:  253 RVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQIYLYRALTATVRRDVEAKAHK 963
            +   Y II GSL LK PQI ++  AK + GL P++ Y +V L+ +S IY+VL+  P+  +GE++V+L Q +++V LLW + T +             L T R           +G  A +    A     +L +P+    LL     P  +  ++PQI  N++Q HTG+LA++T++L   GS  R+ TT+ + G DP  +  + +G   N  ++ Q+ L+   T  V      K  K
Sbjct:   62 KALSYAIITGSLILKLPQILKIVGAKDVTGLTPSAFYMEVVLYLSSTIYNVLRGYPLTTWGENLVILAQNMLLVLLLWTYSTPK------------ILFTTR-----------IGLVATLCAMAAG----MLVIPDEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLALITLVLNLGGSIARLFTTMQETG-DPIQVAGFCVGILLNGTLVLQVLLFWGATNKVLAHAIQKKKK 270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1060.548.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.460e-21094.79protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.370e-15490.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Mannose-P-dolichol6.760e-3838.94utilization defect 1 protein homolog n=1 Tax=Tribo... [more]
Mannose-P-dolichol3.730e-3235.14utilization defect 1 protein homolog n=2 Tax=Ectoc... [more]
Mannose-P-dolichol1.470e-2935.93utilization defect 1 protein homolog n=2 Tax=Monod... [more]
Hypothetical3.240e-2934.20protein (Fragment) n=2 Tax=Hemiselmis andersenii T... [more]
Mannose-P-dolichol7.580e-2934.26utilization defect 1 protein homolog n=11 Tax=Phyt... [more]
Mannose-P-dolichol2.530e-2831.51utilization defect 1 protein homolog n=1 Tax=Aphan... [more]
Mannose-P-dolichol2.880e-2831.93utilization defect 1 protein homolog n=1 Tax=Peron... [more]
Mannose-P-dolichol5.470e-2831.22utilization defect 1 protein homolog n=1 Tax=Bremi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1060contigEcto-sp9_F_contig1060:13446..18389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score582.4
Seed ortholog evalue1.3e-163
Seed eggNOG ortholog2880.D8LNI5
KEGG koko:K09660
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPQ-loop repeat
Ec32 orthologEc-24_002970.1
Exons5
Model size999
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1060.548.1prot_Ecto-sp9_F_contig1060.548.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1060 13446..18371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.5222833-CDS-Ecto-sp9_F_contig1060:13445..136151622928278.5222833-CDS-Ecto-sp9_F_contig1060:13445..13615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 13446..13615 +
1692277818.485443-CDS-Ecto-sp9_F_contig1060:13445..136151692277818.485443-CDS-Ecto-sp9_F_contig1060:13445..13615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 13446..13615 +
1622928278.5346901-CDS-Ecto-sp9_F_contig1060:14760..148871622928278.5346901-CDS-Ecto-sp9_F_contig1060:14760..14887Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 14761..14887 +
1692277818.4981384-CDS-Ecto-sp9_F_contig1060:14760..148871692277818.4981384-CDS-Ecto-sp9_F_contig1060:14760..14887Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 14761..14887 +
1622928278.5462983-CDS-Ecto-sp9_F_contig1060:15734..159781622928278.5462983-CDS-Ecto-sp9_F_contig1060:15734..15978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 15735..15978 +
1692277818.506173-CDS-Ecto-sp9_F_contig1060:15734..159781692277818.506173-CDS-Ecto-sp9_F_contig1060:15734..15978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 15735..15978 +
1622928278.5592282-CDS-Ecto-sp9_F_contig1060:16984..172681622928278.5592282-CDS-Ecto-sp9_F_contig1060:16984..17268Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 16985..17268 +
1692277818.513727-CDS-Ecto-sp9_F_contig1060:16984..172681692277818.513727-CDS-Ecto-sp9_F_contig1060:16984..17268Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 16985..17268 +
1622928278.573234-CDS-Ecto-sp9_F_contig1060:18215..183711622928278.573234-CDS-Ecto-sp9_F_contig1060:18215..18371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 18216..18371 +
1692277818.5211794-CDS-Ecto-sp9_F_contig1060:18215..183711692277818.5211794-CDS-Ecto-sp9_F_contig1060:18215..18371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 18216..18371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.5844278-UTR-Ecto-sp9_F_contig1060:18371..183891622928278.5844278-UTR-Ecto-sp9_F_contig1060:18371..18389Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 18372..18389 +
1692277818.5287328-UTR-Ecto-sp9_F_contig1060:18371..183891692277818.5287328-UTR-Ecto-sp9_F_contig1060:18371..18389Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 18372..18389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1060.548.1

>prot_Ecto-sp9_F_contig1060.548.1 ID=prot_Ecto-sp9_F_contig1060.548.1|Name=mRNA_Ecto-sp9_F_contig1060.548.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=327bp
MLLVRGLSLLAVGLAAAPTGSALVPPTPLPRTTAGGHAAATARGEHVRQG
SSCLLQTQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKT
PQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVV
LFQTLVMVGLLWRFGTEEEVAVSDGGGDEEALVTKRTKKVKPAGGGPVGR
TAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKH
TGELAVLTVLLAFVGSSIRIATTIADLGGDPWLLFNYILGATSNAAILAQ
IYLYRALTATVRRDVEAKAHKAAHAA*
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mRNA from alignment at Ecto-sp9_F_contig1060:13446..18389+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1060.548.1 ID=mRNA_Ecto-sp9_F_contig1060.548.1|Name=mRNA_Ecto-sp9_F_contig1060.548.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:13446..18389+ (Ectocarpus species9 EcSCA_722f female)
ATGCTTCTCGTTCGAGGCCTGTCCTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCAGTGCGCTTGTCCCGCCCACGCCGCTGCCTCGGACCACAG
CGGGAGGGCACGCCGCTGCGACTGCGAGAGGCGAACATGTCAGGCAAGGA
TCCTCCTGTTTGCTGCAGACGTACTTGCAGAAGTAGGTCGGTCCTGTGGG
ACAAATACCACGATATGCGTATGCATACGTACTTACCATGTGTGCTGGCA
AGCCTTTAATCTTGCTGGCAAGCCTCCAACCCTCTGCCTCGTGTTCGTGT
CGAACGATCTGTCGTGTCGTCTCAACTTCTCTCTCACATTAGCCACGTAC
ATACGCCGGCCTTTCACATATGACGAGTGCACACAGCGTCTCCAACTATT
GCAGTGTAGCGTGTGTTCTTGTTCCGAGACGAGGATGTAAATGTAAATAC
GTAGCGTCGCTTGGAGGGAAGTCAACGTTGTCGACTGCGCGGCGATGATG
CACGTACCACTTCATGAAACTGGTGCAGGGTTGTTGGTTCTTCTTCGGAA
ATAAATTTTACTGCCATGCAACGAGGATTGTCCACGTAGACGAACCTCGT
TGTGCTCTTTGTGTACTGAGCTAAATATGTATCTATGCACACAACTGTAA
GCTGAGGCCAGGACAGTCGTCGGGTAGGCAGCCGGATAGGAAAGGGAGGA
AGAGAAAGGGGAAGAAAGTCTGACAGTGAGAGAAGGTGACACGCAGCTCT
CGTACCGTATTTTTTAATGTTGAAGAAGGCGACGTGCGGAGAACAGTGTT
GGGAAATAGCGCGGAACGTGCACGGTGCGCGTTGTGGTGTGGCAAGGCAT
CCGAAGGGTTGACACAGGATGCCCCCCCGGGATGCTCACAACTCTGCGCA
CCCCTACTGCTTGCGTGTGAGTAGGGTCCGGTAATCCCCCTCGCGCGCAG
CGGCTTTGGCCGTGCGATGTGTTGCTGGTTGTTGATGAGAGAGGAAGAGA
ATCGCTGCTAGCGTGTACACCACGTGTTCGGGGCGCAAGACACCTACACA
TCGATAACTCACACACAGACTTCTTGCGGCAGCTGGACGTGGGCACTTTT
AGTTTACAATCAGTACGGAGTATTTGGGTGTGTTTTGTCTTGGGGGACGC
AATACGAGTATCGTCATCCTTTACAAGGCGTCTCCCCTTTTCTCTCTCTG
GATGTTGTGCCTCACTCGATCACTGGGTTCTCGGGTTTGTACGAGTTTTG
TTTTCAAATGCAGGATGTTCTCGACTGACGGACCTGTCGCTATAACCCCC
TCCGCGCGCTCTCAGGCAAATCGCGTCTTGGAGAGGAGGGGCGGTTGAAA
GCAGCGAGGGTGGACCACCTCTCATGAACGTCCAGCTAGGACTGGTCAGG
GTCGCTGGGTATGGCATCATCGCTGGTTCTCTTTGCCTCAAGGTGCCCTC
GTAGGCTCAGCTCTGTCTCTGTCTGTATGTCTCTCTCTATCTACTGTACC
TGTCTCTCAGTATATGTATCTCTATTTACTTACTCTATCTCTTTCTCCGT
CTGTCTTATCTCTTCAGTAGATGTATCTATAGCTTTCTTTTGTACGTGCA
AGACCAATTCAGAGGCGAGCCGCAGAGGCGGGTGTCCTCTGCTACGAGAG
GGTAAAGACTTCAACCCAGAGTCCTGGGTGAGAGTCCTTGGTGTACACTG
CTCACAGAAGTCTCAACAGCAGCAGACGAACGCTCTTGTTTGCAACAAAC
CGGCGACATGGCACCGAGAGGGGGCGTTGTTTTTTGTTCCGACTGTTGTC
GGCGTCTTCCGGTGGCACTCCGATCCAGGTTCAAGTGCCCCTTGCAACTC
TCGACACAAGCAGCGTTGATTCCGGGGTTCATGCGTGCCTTCTTACACGG
CACACTTGGTTACCATCCATTTTGCGCTTGGGAGGCACAGCAGTGCCCCA
CAGCAGTAGAAGAAGGAACGGGTGGCGAGGGGAACCCACTGTACAGATTT
CGCTACGCGGTGGCGCCCACAGAGCATGCTTGTGGAGCGTATTTCCCTCT
TCCCCTCCTCGCCCCTGCCTTCCCAAAGTGAAAACCTCTGAGGCTTCCCG
ACCTCGTGACGCCGAGGCAACCACTATATTGTCGTACAGAGCAACACTGA
CGGAACAAGCCCCCTCCCCCTGTCCTCCGCCTTAGGTTTGTATCTATCTA
CCCCGCGGGGGTGTCACGCTTGTGACCGTCTGAGATGACTGCTGTGACGC
CCCCCTCACCCCCCCCCCTCCCTATTCTCCTCTCTGCAGACCCCCCAGAT
CGCGCGGGTGTGGCACGCCAAGTCCCTGGTGGGCCTCGCGCCGGCTTCCA
TCTACGCGGACGTGTTCCTCTTCGCGACCTCCGTGATCTACCACGTTCTC
AAGAGGAACCCCATCCGCGCCTACGGCGAGTCAGTGGTCGTGCTGTTCCA
GACGCTGGTGATGGTGGGGCTGCTGTGGCGGTTCGGTACCGAGGAGGAGG
TTGCCGTATCCGACGGCGGCGGCGACGAGGAAGGTGTGTTGGCGGGGGTA
TTCATAGCCGTGCGTGCCGTAGACGTTAGACCATTGACCTCGGATCATCA
CTACAAAGCCGGGACGGAGCACGGCTGGGTTTCTCACTGGACCAGGTTCT
CACATCACCAGCGCCGTGAGGTATTCGGCGAGTCGCATGGGAAGGAGTGT
TGGGCTGAGTGCAGCGAGAGAGAGAGAGAGGCTGGAAAGCGGTAAATTTT
TCGTGGTAGTTCTTTGGGGGGGTGACGGGGTATCATTTTCGGAAAGCGGG
AGTGTACGATTGCGCTGATTTTTCAGGAGCTGACGACCGGGGAGCACCGT
TATTCATTTCGGCGGCGGTGAGGGGGGCGGGGGTCACCTCTACGGCCAAA
CGCGTTGATGGGGTCGTGTAGAGACAGCGGCGACAGCGGGAACAGGTGTT
GGCACCCCTCCGCAACTCGACTTGAGGCCGAGGGGGGCCAGAACTACGAC
CGGTAGTAGTCGTAAGGGGTGGCGGCCTGATCGGGTTCACTGTACGGTCG
CCCGACTCCCACGCCTTGTGCTGCGTGTGGTACAGAGAGCTGAGGTTAGG
GTTAATGGTTACAGCTACAAGCGCCATCCTCGCGTGCAAGCATGCATCAT
TAACCGTACCGTAGCGTGATTCTTCTCGCTAAGTTAGTTTCTTTCCACGA
TCCCAATAGAGGGGTTCCGCCGCCTCAGGATAGGAAATAAGCGACGGTGC
GTGGGGGTTGAGGGTAGGGAGTTGTAATAATGTAAACGCATGCCGCAGTC
GTTTGACTGTTGACCTCGCATCCCTACACTGGGCGGGGGATATCGGGGTA
CGCTCTGCCGGGTGCTACAACAGCAACTCCCCGCATGCACTCCCCGACCC
TCTGTCTGTCGCGAAAAAATTATTCTGCTGCTTTTGTGCATAGACCGGAC
GAAGACGAGCGCGTTAATCTCTGCTTGCAGCCACCACGGCACAACATTTG
ATAAACTATCTGTTGCTGACCCGGAAAACATTTGAACAGCTCTGGTCACC
AAGAGAACCAAGAAAGTAAAGCCCGCCGGGGGAGGACCTGTCGGAAGGAC
GGCGATAGTGGCCGGCTCCGTGGCGGCCTCGGTGCTGTGCGTGCTCTACC
TTCCCGAACGCCTGTGGGGGCTGCTGGTGATCGTGTCCACGCCGACGATA
CTGGCGGTTCAGCTGCCGCAGATTTGGAAGAACTGGCGGCAGAAGCACAC
GGGAGAGCTGGCGGTGCTGACGGTGCTGCTCGCTTTCGTGGGGTCATCCA
TTCGGATAGCAACGACCATAGCGGTGAGAGGTGGCGGGGTGTATGATTAG
GCATATGCCGTAGATGGGTTGTTGCTGGAGATTTCGTACCCCCGTGGACC
GATTTTCAATGCTCTGCAGCTATGCCAGTGAGGGTGACTTTGTTGGAACC
TTCTCATCGAGAGCCTTCCGAGAAATCATTAGTTGACTGCGGCATCAACC
TTAGGAAATCTTTCCAGGGGAAGTGTGGAATCGTAATGCAACACGTCAGG
TGGGTTGCAGAAGATGGCACACCCCGTCGACCGATTTTGAAAGCTCGATT
ACTTACCAGAGCAACAGCAGTGAGGGTGCCAGCGTTGGAACAGTTTTGTC
GAGAGCTTTTCCGAAAATGCATCGTTGACTATTATGGCATTCTCTTCGTC
GTGGAGTGGTCGGACTTAAAGAATCGGTCCAAGGACTGGAAAAGCTTCTG
GAACACTTTTTACTATAATCCCAGTTTTACCACGCTGTAGGGCGGAAATT
AACGTGGTGGTGAGAGCCTGTGAATGTAGAGGACACATTTCCCACTCCAC
GTTCATGGGTGTCTCCGTACTCTCGGATTTTGAGGCACTTCAGGCCTGAA
GGCGTTTTCTTTCTTCTTTTTTCTTCAATAACACAACAATCTCATCTCTT
CCACATATACGATTGGATTCAAAGTGTCGTATGTTGGCCAATTTCTATTT
CTACCGTTCCCCAAGCAGCATAGTGCGATATCTCCCCTGTGGGTACCAGG
CTTGTTGGTGGTACGTAGGGCCGGGGCATGGACCTTGCACGTGTATATGC
CTGTTTCCCGTTGACATTGGGAGAGGTAAGGGCGGCTGAAAAGGGCACGC
CTGCACATGCGTCACATGTGGGACGCATGGTCAATGGTCTAACCACTAAG
CCATGCATAGCAAAACGTAAGAGTACCCCCCCCCCCCCCTCCTCCGCCAC
TTCTCGTCCGTGTTGTGCAGGACCTTGGGGGGGACCCGTGGTTGCTGTTC
AACTACATCTTGGGAGCGACCTCAAACGCGGCAATTTTGGCGCAGATCTA
CCTCTACAGAGCTCTCACCGCCACCGTGCGACGAGACGTCGAGGCGAAGG
CCCACAAGGCTGCGCATGCGGCGTGATTGTGATTGTACGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1060:13446..18389+

>mRNA_Ecto-sp9_F_contig1060.548.1 ID=mRNA_Ecto-sp9_F_contig1060.548.1|Name=mRNA_Ecto-sp9_F_contig1060.548.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1962bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:13446..18389+ (Ectocarpus species9 EcSCA_722f female)
ATGCTTCTCGTTCGAGGCCTGTCCTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCAGTGCGCTTGTCCCGCCCACGCCGCTGCCTCGGACCACAG
CGGGAGGGCACGCCGCTGCGACTGCGAGAGGCGAACATGTCAGGCAAGGA
TCCTCCTGTTTGCTGCAGACATGCTTCTCGTTCGAGGCCTGTCCTTGCTG
GCTGTCGGCCTCGCGGCGGCACCGACCGGCAGTGCGCTTGTCCCGCCCAC
GCCGCTGCCTCGGACCACAGCGGGAGGGCACGCCGCTGCGACTGCGAGAG
GCGAACATGTCAGGCAAGGATCCTCCTGTTTGCTGCAGACGCAAATCGCG
TCTTGGAGAGGAGGGGCGGTTGAAAGCAGCGAGGGTGGACCACCTCTCAT
GAACGTCCAGCTAGGACTGGTCAGGGTCGCTGGGTATGGCATCATCGCTG
GTTCTCTTTGCCTCAAGGCAAATCGCGTCTTGGAGAGGAGGGGCGGTTGA
AAGCAGCGAGGGTGGACCACCTCTCATGAACGTCCAGCTAGGACTGGTCA
GGGTCGCTGGGTATGGCATCATCGCTGGTTCTCTTTGCCTCAAGACCCCC
CAGATCGCGCGGGTGTGGCACGCCAAGTCCCTGGTGGGCCTCGCGCCGGC
TTCCATCTACGCGGACGTGTTCCTCTTCGCGACCTCCGTGATCTACCACG
TTCTCAAGAGGAACCCCATCCGCGCCTACGGCGAGTCAGTGGTCGTGCTG
TTCCAGACGCTGGTGATGGTGGGGCTGCTGTGGCGGTTCGGTACCGAGGA
GGAGGTTGCCGTATCCGACGGCGGCGGCGACGAGGAAGACCCCCCAGATC
GCGCGGGTGTGGCACGCCAAGTCCCTGGTGGGCCTCGCGCCGGCTTCCAT
CTACGCGGACGTGTTCCTCTTCGCGACCTCCGTGATCTACCACGTTCTCA
AGAGGAACCCCATCCGCGCCTACGGCGAGTCAGTGGTCGTGCTGTTCCAG
ACGCTGGTGATGGTGGGGCTGCTGTGGCGGTTCGGTACCGAGGAGGAGGT
TGCCGTATCCGACGGCGGCGGCGACGAGGAAGCTCTGGTCACCAAGAGAA
CCAAGAAAGTAAAGCCCGCCGGGGGAGGACCTGTCGGAAGGACGGCGATA
GTGGCCGGCTCCGTGGCGGCCTCGGTGCTGTGCGTGCTCTACCTTCCCGA
ACGCCTGTGGGGGCTGCTGGTGATCGTGTCCACGCCGACGATACTGGCGG
TTCAGCTGCCGCAGATTTGGAAGAACTGGCGGCAGAAGCACACGGGAGAG
CTGGCGGTGCTGACGGTGCTGCTCGCTTTCGTGGGGTCATCCATTCGGAT
AGCAACGACCATAGCGCTCTGGTCACCAAGAGAACCAAGAAAGTAAAGCC
CGCCGGGGGAGGACCTGTCGGAAGGACGGCGATAGTGGCCGGCTCCGTGG
CGGCCTCGGTGCTGTGCGTGCTCTACCTTCCCGAACGCCTGTGGGGGCTG
CTGGTGATCGTGTCCACGCCGACGATACTGGCGGTTCAGCTGCCGCAGAT
TTGGAAGAACTGGCGGCAGAAGCACACGGGAGAGCTGGCGGTGCTGACGG
TGCTGCTCGCTTTCGTGGGGTCATCCATTCGGATAGCAACGACCATAGCG
GACCTTGGGGGGGACCCGTGGTTGCTGTTCAACTACATCTTGGGAGCGAC
CTCAAACGCGGCAATTTTGGCGCAGATCTACCTCTACAGAGCTCTCACCG
CCACCGTGCGACGAGACGTCGAGGCGAAGGCCCACAAGGCTGCGCATGCG
GCGTGAGACCTTGGGGGGGACCCGTGGTTGCTGTTCAACTACATCTTGGG
AGCGACCTCAAACGCGGCAATTTTGGCGCAGATCTACCTCTACAGAGCTC
TCACCGCCACCGTGCGACGAGACGTCGAGGCGAAGGCCCACAAGGCTGCG
CATGCGGCGTGA
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