mRNA_Ecto-sp9_F_contig1060.546.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Heat (shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI3_ECTSI) HSP 1 Score: 181 bits (458), Expect = 5.920e-51 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query: 4 QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ 276
QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ
Sbjct: 626 QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ 716
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRV0_HETAK) HSP 1 Score: 110 bits (275), Expect = 2.660e-27 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 4 QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQVT 282
QDR+++ET DKRNELE+Y+YAMRDK++G LR Y+E + + L AE+WLYSDEGFD+TK+ YA+KL EL +G P E R +E R T
Sbjct: 73 QDRLIQETTDKRNELETYLYAMRDKIIGELRPYLEDGVREDYSKQLEGAEEWLYSDEGFDATKAAYASKLTELQSVGGPAEKRQWEHQYRDQT 165
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK58_9STRA) HSP 1 Score: 109 bits (273), Expect = 7.050e-26 Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query: 4 QDRVLKETADKRNELESYVYAMRDKLV--GSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQV 279
QDRV+KET++KRNELE+Y+Y+MRD++ G L + EA ++L AE+WLYSDEGFDSTKSVYA KLK+L LG P+E+R YE+ NR
Sbjct: 616 QDRVVKETSNKRNELEAYIYSMRDRIGSGGDLAPFTAPAEAASMSTALEQAEEWLYSDEGFDSTKSVYAGKLKDLQALGGPLEARLYESQNRDA 709
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Hypothetical (protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QV80_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.310e-25 Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 7 DRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ 276
DR+ KETA RNELESY+Y+MRDK++G L+ Y EA F +L + EDWLYSDEGFD+TKSVY+ KL E+ G P+E R EA+ RQ
Sbjct: 602 DRIAKETAAMRNELESYLYSMRDKMIGELKDYATESEATTFSKALESTEDWLYSDEGFDTTKSVYSDKLNEVKKFGAPIEKREVEASTRQ 691
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Heat (shock protein 70 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVZ5_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.160e-24 Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 1
Query: 1 QQDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ 276
QQDR+++ETAD RN LESY+Y ++ KL SL+ Y++ E A F + L E+WLY DEGFDSTKS+YAAKL L LG+P++ R EA+ R+
Sbjct: 639 QQDRIIRETADTRNALESYIYDLKAKLGDSLKPYVQDEAATAFNAQLEEVEEWLYGDEGFDSTKSIYAAKLATLRALGDPIQVRMDEASKRE 730
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Uncharacterized (protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MSP3_9BACT) HSP 1 Score: 102 bits (253), Expect = 3.530e-23 Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1
Query: 7 DRVLKETADKRNELESYVYAMRDKL--VGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQ 276
DRV +ET+ RNELESY+Y MRDK+ G+L+ Y EE F SL AEDWLYSD+GFDSTKSVYA KL E+ G+P+ R YEA +RQ
Sbjct: 596 DRVARETSAMRNELESYLYDMRDKIGDYGTLKDYATPEELLSFPKSLELAEDWLYSDDGFDSTKSVYADKLSEVRKKGDPIVKREYEAGHRQ 687
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Heat (shock protein belonging to the HSP70 family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQL0_THAPS) HSP 1 Score: 101 bits (252), Expect = 4.820e-23 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 7 DRVLKETADKRNELESYVYAMRDKLVGS--LRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNR 273
DR+++ET+D RNELESY+Y MRDK++ L Y EE F ++LT+ E+WLY +EGFD+TKSVY +L EL +GNP+E+R YEA NR
Sbjct: 600 DRIIRETSDARNELESYIYDMRDKIISDSQLAPYCTEEEKTNFSTALTSFENWLY-EEGFDATKSVYIKQLNELKKMGNPIEARSYEAKNR 689
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZ84_BRELC) HSP 1 Score: 100 bits (250), Expect = 8.960e-23 Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 4 QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNR 273
QDRV++ET DKRNELES+VY MR+++ L +I GEE S L EDWLY+DEGFDSTKSVY KL + +L +PVE R E+ R
Sbjct: 597 QDRVIEETFDKRNELESFVYEMRNQITDKLAGFITGEEKGNLESKLVETEDWLYTDEGFDSTKSVYQQKLDNMRNLSSPVEFRLTESTER 686
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDW0_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.220e-22 Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 4 QDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNRQV 279
QDR+++ET +KRNELES+VY MR+ + L ++ +E L AAEDWLYSDEGFDSTKSVY AKL EL L +PVE R E+ R V
Sbjct: 602 QDRIIEETFNKRNELESFVYEMRNHVSDKLAGFVTSDERSALEDKLNAAEDWLYSDEGFDSTKSVYQAKLDELRQLTSPVEFRLSESTERGV 693
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LU80_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.580e-22 Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 7 DRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAEDWLYSDEGFDSTKSVYAAKLKELMDLGNPVESRFYEANNR 273
DRV++ETADKRNELESY+Y+MRD+++G L Y + F ++L + E+WLY D GFD+TKSVYA KLK L G P+E R EA R
Sbjct: 389 DRVIRETADKRNELESYIYSMRDRVIGDLAPYCNDADKASFENALESTENWLYED-GFDATKSVYADKLKGLEKFGVPIERRLVEATGR 476 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1060.546.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1060.546.1 >prot_Ecto-sp9_F_contig1060.546.1 ID=prot_Ecto-sp9_F_contig1060.546.1|Name=mRNA_Ecto-sp9_F_contig1060.546.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp QQDRVLKETADKRNELESYVYAMRDKLVGSLRTYIEGEEADKFGSSLTAAback to top mRNA from alignment at Ecto-sp9_F_contig1060:158..936+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1060.546.1 ID=mRNA_Ecto-sp9_F_contig1060.546.1|Name=mRNA_Ecto-sp9_F_contig1060.546.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=779bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:158..936+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1060:158..936+ >mRNA_Ecto-sp9_F_contig1060.546.1 ID=mRNA_Ecto-sp9_F_contig1060.546.1|Name=mRNA_Ecto-sp9_F_contig1060.546.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:158..936+ (Ectocarpus species9 EcSCA_722f female)back to top |