mRNA_Ecto-sp9_F_contig106.543.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig106.543.1
Unique NamemRNA_Ecto-sp9_F_contig106.543.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig106.543.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig106contigEcto-sp9_F_contig106:31758..35063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001350.1
Exons4
Model size1071
Cds size1071
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig106.543.1prot_Ecto-sp9_F_contig106.543.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig106 31758..35063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928277.6805248-CDS-Ecto-sp9_F_contig106:31757..320751622928277.6805248-CDS-Ecto-sp9_F_contig106:31757..32075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 31758..32075 +
1692277818.1941373-CDS-Ecto-sp9_F_contig106:31757..320751692277818.1941373-CDS-Ecto-sp9_F_contig106:31757..32075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 31758..32075 +
1622928277.6954215-CDS-Ecto-sp9_F_contig106:33538..337121622928277.6954215-CDS-Ecto-sp9_F_contig106:33538..33712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 33539..33712 +
1692277818.2018967-CDS-Ecto-sp9_F_contig106:33538..337121692277818.2018967-CDS-Ecto-sp9_F_contig106:33538..33712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 33539..33712 +
1622928277.7166402-CDS-Ecto-sp9_F_contig106:34006..344861622928277.7166402-CDS-Ecto-sp9_F_contig106:34006..34486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 34007..34486 +
1692277818.209269-CDS-Ecto-sp9_F_contig106:34006..344861692277818.209269-CDS-Ecto-sp9_F_contig106:34006..34486Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 34007..34486 +
1622928277.7330916-CDS-Ecto-sp9_F_contig106:34964..350631622928277.7330916-CDS-Ecto-sp9_F_contig106:34964..35063Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 34965..35063 +
1692277818.2167883-CDS-Ecto-sp9_F_contig106:34964..350631692277818.2167883-CDS-Ecto-sp9_F_contig106:34964..35063Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 34965..35063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig106.543.1

>prot_Ecto-sp9_F_contig106.543.1 ID=prot_Ecto-sp9_F_contig106.543.1|Name=mRNA_Ecto-sp9_F_contig106.543.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=357bp
AAAAAAAAAASPIDHGNDISNEQDAPSSRKLRKSRKQQRDTNTTTAGRSH
HLPRRKQPPARAHRRTQTPAPSSESTSRSVSPSPPQQPSEQAVSQRERRF
SKSVEKGLRGVRGKAMALDRFLYHEIEPAAQRIFDAAVLDHAEACRLLDG
KPVQAFAGGGGGGGPPPPPPPPSTSVRASLPAKGRQGAVTGGAFDRPRII
DFTGGGGGGGGGSYGALSKTVPGRRRLLVEDNSRKKEFQEKEGGGGHRGG
SSGSRGERAVATGFAGDDVLAGAASRGRRERQIGGGGGGVAAAAAAAAAA
AAARSDDLGEEDDDVWDAPLPGRLRATDISAKIVGLSSEIRRRAAAEAGR
EGHRKQ*
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mRNA from alignment at Ecto-sp9_F_contig106:31758..35063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig106.543.1 ID=mRNA_Ecto-sp9_F_contig106.543.1|Name=mRNA_Ecto-sp9_F_contig106.543.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:31758..35063+ (Ectocarpus species9 EcSCA_722f female)
GCGGCGGCGGCAGCGGCGGCAGCAGCAGCATCCCCGATCGACCATGGCAA
TGACATCAGCAACGAACAGGATGCTCCGTCGTCCAGAAAGCTGAGAAAGA
GTCGAAAGCAGCAGCGCGACACCAACACCACCACCGCCGGGCGGTCTCAC
CACCTGCCTCGTCGCAAGCAGCCTCCGGCGCGAGCGCATCGCAGGACTCA
GACCCCAGCGCCCTCGTCGGAGTCCACGTCTCGGTCGGTGTCTCCTTCCC
CGCCACAACAGCCGAGCGAGCAAGCGGTTTCCCAGAGGGAGAGAAGGTTC
TCGAAGAGCGTCGAAAAGGTGTGCGGGTCTACATACGTACAATGAGCGCC
AAATAGCTTTTCGAGAGAAACAAGCCGCCGTAAAACAATTTCTTCAGAGT
GCAGCAGTAGGAGCCTCCCCTTGCTTTGCGTAGGTGTGCCCACGCACCAC
ACACCCGATTGTTGAATATCACCTCTGCTGCTGCTGTGTTGATGTTGCAG
CAGCCGTTTACAGGAAGTCGTCGGGGGATATCTCCTAAACGACAGACAAC
TATGTACCCCCAGAGGCCCCAAAGGCTCGAAATTTCCAAACGGTAATTAT
TATGAATCCTATGTATGAAAAAATAAATCCAAACGGTCAGCCCTGCTGGC
TCTCGGTGGCGTTCACCGAAGCATTCTCAAGCAGGGTCTAGGCAAGGATT
GTTGCTACAAGCACACACACGGCACGGCGGCGTGTGAAGAGAACCTTAAA
GAATATCCGCCGTGCGCCCCCATGTGCAATCTCAATATTTGTTCCGCCTG
CTGTGTCCTGCTGTCCTGCTGTCGGGGATTTGTCGCGCGAGCAAGCGTGT
TTGTTGGCAGATCTCTTCGTTCTACGCTACACATATAGTCTTGCGCAAAT
AATTTCATGTATGAATGCCGGCACGCATCTAACTGTTTGCACGTGCACGT
CGCTTGTGTGAAGTTCTGCTGTGCAATTTGCTTCCCCAGTACTCAACAAC
AACCAGCCTTCACCCTAACAAGTCTCACTGAGCGCCTCTTGCTTGAAAGG
GAGTCCATCTGACGTCCGGAAATGGACGGGGACGACCACACATAACACAC
GTTCTCCGTTAGAACAACCCTTTGGTCTTGTCAAACATGAGCGTAGGCAC
CGCCGAGGGTTGTTCTGTCTGCCCCTAGATCGGAACTCTTGAGTTAGAGA
TGCAGCGGTATGGGGAAGAACTGCCGAGACGTAGTTAAACACATGGACGT
CGGCATATATATGCAAACTGTGCGTGCCATGGTCGTGTTGCATGGTAGCA
ACGAATTGGAGCATGTATGTACTGGTTAGTCTTGAAGGGGACCGTCGAGA
CTTCCTGTGTTAGTAATGTAGCCTCTGAAGCTGTTCACGTGGTCTGGATT
GATTGATTGTTGACCACCGCAACGCATGCAGACCGCATGCTCACGAGCAT
CGGTGCGGAGAGACGGGACGACACCGGTCCGCCCTGTTGCTTCCAGGCCC
CACGGCTGAGTACCACGGGATTTCACAAGGCGTTACTTGCAGCCGCCGCC
ACCGCTGCTGCTGCTGCTGCTGCTGCAGAGCTTGCTTCTTGCGCCGTGGG
CGCATGTTTTGAACCTCTTTCGCGAGTAATGTCGGCCGCGTGATGTTTTA
GTCATTCGCCATTTATTTACTTTTATTGGGAAGACAACAGCAATAATTAT
TGACGCAAGCTCCATACGTTCGGGCGCGTTTGCCTTCCCTCCTCCCCCCT
CGCTTGAACTATGAATACGATTCTCGTGCAGGGGCTCCGCGGCGTGCGCG
GAAAAGCCATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGCCGGCC
GCCCAACGTATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCCTGCCG
CCTCCTGGATGGAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGGCGGCG
GCGGCGTACAATCCGCCTCCTCCAAACACCAGCAGGAGGGCCGGGGGGAT
TCAAGAGGAGGGAGCAAGCCGACCATCGTCAGTAGCAACAACGACATTCG
GAGCGACCCCACAGCAGCAGCGGCAGCGGCAGCAGCAGCAGCAGTAGTAG
GAGATGACGACGTCGGCGTTGCGACGAGTAAAGCTCCAGGCACTGCACCT
GCGACCGCAACAGCGCCGGTGGCTGCAGTGTCGGGGGCGAGGGGTAATGC
CAACCCTACCGAGCCGCGGCAACGGGCAAAGAGGGCCGGGGTGATCCAGC
CGCCGCCGCCGCCGCCGCCGCCGTCGACCAGCGTGCGCGCTAGCTTGCCG
GCGAAAGGAAGGCAGGGCGCCGTCACCGGTGGTGCGTTCGATCGTCCTCG
CATCATCGATTTCACCGGCGGCGGCGGCGGTGGTGGTGGCGGCAGTTACG
GTGCTCTCTCGAAGACCGTGCCCGGTAGGCGCCGCCTCCTCGTTGAAGAC
AACTCCAGGAAAAAGGAGTTCCAGGAGAAAGAGGGGGGAGGGGGACATAG
GGGTGGATCGAGCGGTTCGCGAGGAGAGCGGGCGGTGGCTACGGGCTTTG
CCGGCGACGACGTCCTGGCGGGAGCGGCGTCACGTGGACGAAGGGAGAGG
CAGATAGGCGGTGGCGGCGGCGGTGTTGCTGCTGCTGCCGCCGCTGCTGC
TGCTGCTGCTGCTGCTAGGAGTGACGACCTCGGGGAGGAAGACGATGACG
TGTGGGATGCGCCGCTTCCTGGCAGGCTGGTGAGAAAAAAAACACGTTTT
GGGGCAGTTGGGTGTGCGGAAGGGGTCATGCCACGTTTCGCGTGTTTTTG
GAAGTACTACGCCCCGACATGAATCAATCGAAACGGCTTGAGCACCGGCA
CGGATTCCAGGCAGCAGCGGTACGTGTTACGACAGAAGGCCACCGGTGAA
CCGTTCTCTTCCATATAGAATAACATCAGTGTTTCCAAGTCAGTTATTGT
TTCGTTACAACGTGGGAGAAACCAGTGGTATCACCTCCCGCGGGTCGGTT
TCGGCCACCCTCCCATACTCCTTTCTTTTATCGGGGAGAAGCTCTTCTCT
CTCACCCCTTGCTGTTGTCGCAGCTGAGAACCCTCTTAAAAGACCATTCG
AAGTCTCAACTCTCCCTGTTGTATGGCTGTATCCATCGGCCACTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTTCCCGCTAAACTCGTT
TTCATAGCGTGCGACCGATATCAGCGCCAAGATCGTGGGACTGTCATCCG
AGATCAGGCGCCGGGCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCAAG
CAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig106:31758..35063+

>mRNA_Ecto-sp9_F_contig106.543.1 ID=mRNA_Ecto-sp9_F_contig106.543.1|Name=mRNA_Ecto-sp9_F_contig106.543.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2142bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:31758..35063+ (Ectocarpus species9 EcSCA_722f female)
GCGGCGGCGGCAGCGGCGGCAGCAGCAGCATCCCCGATCGACCATGGCAA
TGACATCAGCAACGAACAGGATGCTCCGTCGTCCAGAAAGCTGAGAAAGA
GTCGAAAGCAGCAGCGCGACACCAACACCACCACCGCCGGGCGGTCTCAC
CACCTGCCTCGTCGCAAGCAGCCTCCGGCGCGAGCGCATCGCAGGACTCA
GACCCCAGCGCCCTCGTCGGAGTCCACGTCTCGGTCGGTGTCTCCTTCCC
CGCCACAACAGCCGAGCGAGCAAGCGGTTTCCCAGAGGGAGAGAAGGTTC
TCGAAGAGCGTCGAAAAGGCGGCGGCGGCAGCGGCGGCAGCAGCAGCATC
CCCGATCGACCATGGCAATGACATCAGCAACGAACAGGATGCTCCGTCGT
CCAGAAAGCTGAGAAAGAGTCGAAAGCAGCAGCGCGACACCAACACCACC
ACCGCCGGGCGGTCTCACCACCTGCCTCGTCGCAAGCAGCCTCCGGCGCG
AGCGCATCGCAGGACTCAGACCCCAGCGCCCTCGTCGGAGTCCACGTCTC
GGTCGGTGTCTCCTTCCCCGCCACAACAGCCGAGCGAGCAAGCGGTTTCC
CAGAGGGAGAGAAGGTTCTCGAAGAGCGTCGAAAAGGGGCTCCGCGGCGT
GCGCGGAAAAGCCATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGC
CGGCCGCCCAACGTATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCC
TGCCGCCTCCTGGATGGAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGG
CGGCGGCGGCGGGCTCCGCGGCGTGCGCGGAAAAGCCATGGCCCTGGATC
GCTTCCTGTACCACGAAATCGAGCCGGCCGCCCAACGTATTTTCGACGCG
GCCGTGTTGGATCACGCGGAAGCCTGCCGCCTCCTGGATGGAAAGCCCGT
GCAGGCTTTCGCCGGCGGCGGCGGCGGCGGCGGCCCGCCGCCGCCGCCGC
CGCCGCCGTCGACCAGCGTGCGCGCTAGCTTGCCGGCGAAAGGAAGGCAG
GGCGCCGTCACCGGTGGTGCGTTCGATCGTCCTCGCATCATCGATTTCAC
CGGCGGCGGCGGCGGTGGTGGTGGCGGCAGTTACGGTGCTCTCTCGAAGA
CCGTGCCCGGTAGGCGCCGCCTCCTCGTTGAAGACAACTCCAGGAAAAAG
GAGTTCCAGGAGAAAGAGGGGGGAGGGGGACATAGGGGTGGATCGAGCGG
TTCGCGAGGAGAGCGGGCGGTGGCTACGGGCTTTGCCGGCGACGACGTCC
TGGCGGGAGCGGCGTCACGTGGACGAAGGGAGAGGCAGATAGGCGGTGGC
GGCGGCGGTGTTGCTGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGC
TAGGAGTGACGACCTCGGGGAGGAAGACGATGACGTGTGGGATGCGCCGC
TTCCTGGCAGGCTGCCGCCGCCGCCGCCGCCGCCGCCGTCGACCAGCGTG
CGCGCTAGCTTGCCGGCGAAAGGAAGGCAGGGCGCCGTCACCGGTGGTGC
GTTCGATCGTCCTCGCATCATCGATTTCACCGGCGGCGGCGGCGGTGGTG
GTGGCGGCAGTTACGGTGCTCTCTCGAAGACCGTGCCCGGTAGGCGCCGC
CTCCTCGTTGAAGACAACTCCAGGAAAAAGGAGTTCCAGGAGAAAGAGGG
GGGAGGGGGACATAGGGGTGGATCGAGCGGTTCGCGAGGAGAGCGGGCGG
TGGCTACGGGCTTTGCCGGCGACGACGTCCTGGCGGGAGCGGCGTCACGT
GGACGAAGGGAGAGGCAGATAGGCGGTGGCGGCGGCGGTGTTGCTGCTGC
TGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTAGGAGTGACGACCTCGGGG
AGGAAGACGATGACGTGTGGGATGCGCCGCTTCCTGGCAGGCTGCGTGCG
ACCGATATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAGGCGCCG
GGCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCAAGCAGTAGCGTGCGA
CCGATATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAGGCGCCGG
GCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCAAGCAGTAG
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