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Homology
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI) HSP 1 Score: 363 bits (933), Expect = 1.730e-113 Identity = 385/440 (87.50%), Postives = 388/440 (88.18%), Query Frame = 1
Query: 148 MPRSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACKRGHADVARLLLRWGADETIVDNRGRTAYQRLPAIDNVVEEYRRGIERLSKVLARAPQDRAWCRRGFLVMCRARPDMVRLKTAEILDPTAAGNQPQERDEGLVGLAARLVKLADEDVFRKVVGLL 1467
MPRSSRYEDRANILRGSEDT FRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DETIVDNRGRTAYQRLPAIDNVVEEYR GIERLSKVLARAPQDRAWCRRGFLVMCRARPD VRL+TA+ILDPTAAGNQPQ+RDEGLVGLAARLVKLADEDVFRKVVGLL
Sbjct: 1 MPRSSRYEDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXPNDEVVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFRLANATTVLHVAAEYNEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------DETIVDNRGRTAYQRLPAIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTAKILDPTAAGNQPQQRDEGLVGLAARLVKLADEDVFRKVVGLL 422
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: F-box (domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI) HSP 1 Score: 138 bits (348), Expect = 2.810e-32 Identity = 82/164 (50.00%), Postives = 94/164 (57.32%), Query Frame = 1
Query: 94 LHFDTYNTSLGGVTETEVMPRSS---RYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 576
L F+T + +EV SS YE+R++IL+ DT F+LV DRATP+QWAEWLRAPLEHAAAT + DLV KLL AGANG GW GC GKTLLHAAAEGGN QVI L AGA D A TP A+V+ LD D
Sbjct: 19 LKFETRQLAQRNFLSSEVRHTSSIIPGYEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALDTGHTPLDLAVIGGKEAAAKALIMAGANVNMLDATND 182
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI) HSP 1 Score: 142 bits (358), Expect = 2.950e-32 Identity = 77/137 (56.20%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 166 YEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 576
YE+RA+IL+ DTIF+LVCDRATPEQWAEWLRAPLEHAA T + DLV KLL AGAN GW GC GKTLLHAAAEGGN VI +L RAGA D + TP ADV++LD D
Sbjct: 4 YEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGHTPLDLAVIGGKEAAAKALIMAGADVNTLDATND 140
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI) HSP 1 Score: 134 bits (337), Expect = 4.360e-30 Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 169 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKD 453
EDRA L + IF+L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD KTLLHAAAEGGN +V+ AL+RAGA D +
Sbjct: 9 EDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDME 103
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.850e-27 Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 154 RSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQ-VIMALLRAGAAGD 447
R EDRA IL + D IF L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGANGS G GCD TLLHAAAEGGN + V+ AL++AGA D
Sbjct: 6 REDDAEDRAKILGDAADMIFELMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGANGSAGRRGCDDNTLLHAAAEGGNEEEVVTALIKAGAEED 104
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Pc16g06120 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI) HSP 1 Score: 123 bits (308), Expect = 5.130e-27 Identity = 67/136 (49.26%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 169 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 576
EDR IL + D IF+L+CDRAT EQW EWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD TLLHAA V+ AL+RAGA D + TP ADV+++D + D
Sbjct: 9 EDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGADGSAGWRGCDDNTLLHAAXXXXXXXVVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTD 144
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI) HSP 1 Score: 124 bits (311), Expect = 5.980e-27 Identity = 178/387 (45.99%), Postives = 195/387 (50.39%), Query Frame = 1
Query: 160 SRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACKRGHADVARLLLRWGADETIVDNRGRTAYQRLPAIDNVVEEYRRGIERLSKVLARAPQDRAWCRRGFLVMCRARPD 1320
S ++DR + L G+ D I LVCD ATP QW +WLR PLEHAA T + LV+KLL GAN S GW GCDG+TL+HA AEGG+ QVI L RAGA + A TP ADV+ LD D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AC + D A LLLRWGADET VD G T +P ID EE I RL+K+L A QDR W RRG LVMCRA P+
Sbjct: 2 STHQDRKSTLHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQVISMLTRAGAGKYINDQAPLSGLTPLHLAVSGGKLAATKVLMLAGADVNRLDADX---------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCHALDAGHISTVNVSLGWGCLWLEPTSKTCIAGRPPLCVSTFSISYFAAMLALLKLGADLHAKCPHNGMTALHTACHVVNPDAADLLLRWGADETAVDWNGATTSAVIPRIDEAPEENGPAILRLTKLLKFADQDRTWRRRGLLVMCRAHPE 361
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A9_ECTSI) HSP 1 Score: 116 bits (290), Expect = 9.010e-27 Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 175 RANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGC-DGKTLLHAAAEGGNAQVI 414
RA I++ DTIF+LVCDR T EQW+EWLRAPLEHAAATA+++LV KLL AGANG W GC D KTLLHAAAEGG+A V+
Sbjct: 2 RARIMQDLGDTIFKLVCDRVTAEQWSEWLRAPLEHAAATANYELVSKLLRAGANGGASWRGCHDDKTLLHAAAEGGDALVV 82
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI) HSP 1 Score: 112 bits (280), Expect = 2.780e-22 Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 160 SRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTP 483
+ +++R L G+E+ +F+LV ATP QWAEWLRAPLEHA A + L LL AGA+G GW GCDG++LL A +GGN++ + ALL AG+ GD + R+P
Sbjct: 2 ANFDERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSP 109
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI) HSP 1 Score: 109 bits (273), Expect = 1.530e-21 Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 169 EDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERT 480
EDR L+G E +F+LV ++AT QW+EWLRAPLEHA A D DL LL AGANG +GW GC+ +TLL AAAEGGN +V+ LL G + D A+ ++RT
Sbjct: 5 EDRT-ALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRT 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig106.541.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
| Match Name | E-value | Identity | Description | |
|---|
| Similar | 1.730e-113 | 87.50 | to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus T... | [more] |
| F-box | 2.810e-32 | 50.00 | domain and ankyrin repeat protein n=1 Tax=Ectocarp... | [more] |
| Similar | 2.950e-32 | 56.20 | to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... | [more] |
| Uncharacterized | 4.360e-30 | 69.47 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 2.850e-27 | 67.68 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Pc16g06120 | 5.130e-27 | 49.26 | n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... | [more] |
| Similar | 5.980e-27 | 45.99 | to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus s... | [more] |
| Uncharacterized | 9.010e-27 | 70.37 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Ankyrin | 2.780e-22 | 48.15 | repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... | [more] |
| Ankyrin | 1.530e-21 | 53.85 | repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 362.1 |
| Seed ortholog evalue | 3.8e-97 |
| Seed eggNOG ortholog | 2880.D7FPN3 |
| KEGG ko | ko:K21440 |
| GOs | GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-16_001330.1 |
| Exons | 2 |
| Model size | 2763 |
| Cds size | 1323 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928276.8889513-UTR-Ecto-sp9_F_contig106:3527..3674 | 1622928276.8889513-UTR-Ecto-sp9_F_contig106:3527..3674 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 3528..3674 + |
| 1692277817.6986837-UTR-Ecto-sp9_F_contig106:3527..3674 | 1692277817.6986837-UTR-Ecto-sp9_F_contig106:3527..3674 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 3528..3674 + |
| 1622928276.9170494-UTR-Ecto-sp9_F_contig106:4997..5007 | 1622928276.9170494-UTR-Ecto-sp9_F_contig106:4997..5007 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 4998..5007 + |
| 1692277817.7255344-UTR-Ecto-sp9_F_contig106:4997..5007 | 1692277817.7255344-UTR-Ecto-sp9_F_contig106:4997..5007 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 4998..5007 + |
| 1622928276.9339223-UTR-Ecto-sp9_F_contig106:5872..7155 | 1622928276.9339223-UTR-Ecto-sp9_F_contig106:5872..7155 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 5873..7155 + |
| 1692277817.737213-UTR-Ecto-sp9_F_contig106:5872..7155 | 1692277817.737213-UTR-Ecto-sp9_F_contig106:5872..7155 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig106 5873..7155 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928276.9025002-CDS-Ecto-sp9_F_contig106:3674..4997 | 1622928276.9025002-CDS-Ecto-sp9_F_contig106:3674..4997 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig106 3675..4997 + |
| 1692277817.7097685-CDS-Ecto-sp9_F_contig106:3674..4997 | 1692277817.7097685-CDS-Ecto-sp9_F_contig106:3674..4997 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig106 3675..4997 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig106.541.1 >prot_Ecto-sp9_F_contig106.541.1 ID=prot_Ecto-sp9_F_contig106.541.1|Name=mRNA_Ecto-sp9_F_contig106.541.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=441bp
MPRSSRYEDRANILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATAD
HDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGD
KDTAASYKERTPLHVAASGGKEAAAKALMMAGADVHSLDTDQDTPLHLAI
EGGYVELAEDLLLSGADPNAKGSRGSYPIQLAAGRGQDEVVSALVQKGAS
LNCLDAVGKTPLYLGVVEDRVSTVKLLLAAGADASFRLANATTVLHVAAE
YNEAGAIVPLVEAGADIEARSKSGQTPLWFSAFYDSYTAMLALLKLAADV
NSVGTYGSTPLHAACKRGHADVARLLLRWGADETIVDNRGRTAYQRLPAI
DNVVEEYRRGIERLSKVLARAPQDRAWCRRGFLVMCRARPDMVRLKTAEI
LDPTAAGNQPQERDEGLVGLAARLVKLADEDVFRKVVGLL* back to topmRNA from alignment at Ecto-sp9_F_contig106:3528..7155+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig106.541.1 ID=mRNA_Ecto-sp9_F_contig106.541.1|Name=mRNA_Ecto-sp9_F_contig106.541.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3628bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:3528..7155+ (Ectocarpus species9 EcSCA_722f female)
GGAAGACAGAAGCGACACGTGCGTGCCTTCTCTCCACCCCCCTCTCTTTC
ATTCCACGCGTCGTGTCTCTCCCATATATTCCGTGTGACTGCTCTTCATT
TTGATACATACAACACTTCGCTGGGCGGAGTTACCGAAACTGAAGTCATG
CCGCGTTCCTCGCGTTACGAAGACCGTGCCAACATCCTGCGGGGCTCCGA
AGACACGATCTTCAGACTGGTGTGCGATAGGGCCACGCCAGAACAGTGGG
CGGAGTGGCTGAGGGCTCCGTTAGAGCATGCGGCGGCCACAGCGGACCAT
GACCTGGTGAAGAAGCTGCTGAACGCCGGAGCGAACGGGAGCACGGGTTG
GGTGGGTTGCGATGGCAAGACCCTGTTGCACGCAGCTGCCGAGGGCGGTA
ACGCGCAGGTGATCATGGCGCTGCTGAGGGCAGGGGCGGCAGGGGACAAG
GACACCGCAGCCTCGTACAAAGAGCGAACCCCGCTTCATGTTGCGGCTTC
TGGCGGGAAGGAGGCTGCTGCGAAGGCGCTCATGATGGCCGGAGCGGATG
TACACTCCCTCGACACCGATCAGGACACTCCGCTTCACTTGGCCATCGAA
GGCGGTTACGTAGAACTTGCCGAGGACCTGCTGCTCAGCGGAGCTGATCC
CAACGCCAAAGGTTCAAGAGGCTCCTACCCTATTCAGCTCGCTGCTGGCC
GTGGCCAGGATGAGGTAGTCTCGGCCTTGGTGCAAAAGGGAGCGAGCCTG
AACTGCCTCGATGCGGTAGGGAAGACCCCGCTCTACCTGGGGGTTGTCGA
GGACCGCGTGTCCACGGTGAAACTTCTCCTGGCTGCGGGTGCCGATGCAA
GCTTTCGCCTGGCCAATGCGACGACCGTCCTACACGTAGCCGCGGAGTAT
AACGAAGCCGGTGCCATCGTTCCTCTCGTTGAGGCTGGGGCTGATATCGA
GGCCCGGAGCAAAAGCGGACAGACCCCGCTGTGGTTTTCGGCTTTCTACG
ACTCGTACACCGCCATGCTCGCGCTGCTGAAACTCGCAGCCGACGTGAAC
TCGGTAGGCACCTACGGATCGACACCCTTGCACGCCGCGTGCAAGAGAGG
CCACGCAGACGTTGCACGCCTGCTGTTGAGATGGGGCGCAGACGAGACCA
TCGTCGACAACCGTGGCCGAACTGCCTACCAGAGGTTGCCAGCGATCGAC
AACGTGGTCGAAGAATACCGCCGCGGAATCGAGCGTCTGTCCAAGGTACT
GGCACGCGCCCCGCAAGACAGAGCCTGGTGCCGCCGGGGCTTCCTCGTCA
TGTGCCGTGCCCGTCCAGACATGGTGCGGCTAAAAACAGCAGAGATCTTA
GATCCGACAGCGGCTGGCAACCAGCCACAGGAACGAGACGAAGGACTCGT
TGGTTTGGCAGCACGGCTGGTGAAGCTAGCCGACGAGGACGTGTTCCGCA
AGGTCGTGGGACTGCTGTAGAGCGAGCAAGGTCAGTCCTGTGCCAGTGTG
TGTTTGCACCCCATGCTACATGTAAGGAAATTTCGGTTTCCTTTTTCAGG
CGTCAGCCTCTGCTGCTGTTTATAGGTTACCCCTCTCACTCGTTTTGAAG
ACGTGCGGTCATTTTCAAGTGCTGGACGGCGTTGACGAGTGTATTTGTGC
CTTGTGGGAAGTGTGGTGCTGCTGTGTCGTTTCGTTGTGGTTGTTTTGGC
CACTGCTATACTGCTGTAGCCTTGCCTCAACACGTCCGTCGCCGTTAGCC
GACTAAGCTCTGCCAACCAGACAATGCGTGCGGATGTGCCACCGGATTCG
AGAAAAGCATGTCCGGGTGTGCGTATCTATCATATCGCGATTGCGAGAAG
CGTCCGCCGATAGAGGTTGCATTTGACCAAGTTCACCATCTGTTCTACAC
GTGTCTCGGCAAATCCGTACAGTATGCCAACACGCGTCGCAACGATGACA
CTATCTATCTATCCTGCATCGATAACTCGGAAACAATTACAGGCCACCAG
GCACTCCACAGCCCAGCTCATGCCGATCTATATCTTTCCTGTCGAGGTCC
TGTCATGGAGACGGTGTGGCATATCCCTAACCGCCTCCAGGCTTGCTGCT
ACGTGCTTGTATCGTACTTCGAACTCGTTACGGCCGAGCGGGGCTTTGCC
TCCTCGGTATCTAGCGGTGCAGTGCTGACTGTACGTGGTTGACGCTGCGG
GAATGATCTTGGAGATGGGGTTAGTGACTTCTAGCTTGCAAGCGACTTCT
ATTAGCCCGCGCTGCTGGCACCCAACCGGATCGTTTCAATAGTTTTCCCC
TACTGTCACCCGTCCCTTCTGTCTCTGCCACTCTCGCATTGACAGACGAT
CAGCTAGTACGTGGGCGGCGTTCTTGGTCGCTGGAGAGCATGGCACTCGT
GGCAGACTGGGCGGGAGAGCCACCCTGTTTTGGTCAGCAGTATTCGGAAG
TAGGCACACCGTACCGATGCGCCCGTCAGTTAAATTTTCCTGACAAAATT
ATCGCGAGACCAGCGCGAACGCGCGCTCGAAATGTGTTTTTTTGAGTGTA
TATTACAAGGGAGAGAGAACGTAGTGTAGTGCTGCTTCCGAAGTTGGGGT
AGCACGGGCCTGCAGATCGGATACGTGGGCGTTGGGGAGTGACCGTTTCA
CCGACGTGGTGTGCAAATAGGAATAAGCGAGAGCGAAGGACTCGGGGTGG
TTGGGAGGCACACTTATTTTTTTTTCTTGTAAATTTTCCTCGTTGCTCTT
AACCACTGAAATGTACATTATTTAGACCCTTGTACGTATTGCCGCCAGCA
AAGCAACTTTTTTTTAATTCTTCCCCCGCCCCCTGCTAGAAGTACATATT
TTCCATGATCGATGCCCGGTTTGTTTATTGATCGTTCTTTTGTTGGTCTA
GATATTGGAAAGGTTGTGACCGTGTAGTTGGGAAGAGTGTGAGGTATTTC
GAGCCCGTTAACAAGGACGGGCGTACATCTTGGTTTGCCCTGTGTTATGT
ATCAGTTAGTTCGACTGTTTGCATTGTTATCGGTCCAGAGGAGCATGGGC
TTCGTAAATCCTTGCGTGTGAATAAAAACAAAATCATGGGCGTAGGCTGC
TGGTTTGTCCACTCTCTTCTTCAGTTTGTCGAAACGTAGGTGTTGTGGAT
GTCTTGCAAACACTTTGTACACATGATTGGGCGGTGAGGCTCTTGCTCCG
TTGTACAAGATGGATTGTAGCTGTTTTGGGTCTGTCGATCCCGGACATTT
GGTGGTGTGTGCGTGATTTTTCGCTACCCGCAGATGATCTGGGTTGTAGG
TGTTGCCTTCGGTTTCTTGTAGTCTGCCCGACAGCAAGTATTTTAGTACC
CAGCAAGCGCCTGCGTTTATTCATGTAGGTGGAACGAGTTCCTCCCTGTA
GACGATGGTGTTGGTGGCTAGCTGTCGTTGGGTTTGTCGATAATAATAAT
TTGTTTATCCCGTCCAGAAATGCCGAGGTTTATTCTGTGGGCGTGGGCGA
TGTGTTCGCCCTTTTTAAGAGGATGGAGTTATACTGCTCTATTGCTCTCT
TGATATCCAGTCGTCGATTACGGGCTGAGTTGTTGCGCCTATTAAGTACA
TACAAGGGTTCAGTGTCGGGTGTGGGGG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig106:3528..7155+ >mRNA_Ecto-sp9_F_contig106.541.1 ID=mRNA_Ecto-sp9_F_contig106.541.1|Name=mRNA_Ecto-sp9_F_contig106.541.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2646bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:3528..7155+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGCGTTCCTCGCGTTACGAAGACCGTGCCAACATCCTGCGGGGCTC
CGAAGACACGATCTTCAGACTGGTGTGCGATAGGGCCACGCCAGAACAGT
GGGCGGAGTGGCTGAGGGCTCCGTTAGAGCATGCGGCGGCCACAGCGGAC
CATGACCTGGTGAAGAAGCTGCTGAACGCCGGAGCGAACGGGAGCACGGG
TTGGGTGGGTTGCGATGGCAAGACCCTGTTGCACGCAGCTGCCGAGGGCG
GTAACGCGCAGGTGATCATGGCGCTGCTGAGGGCAGGGGCGGCAGGGGAC
AAGGACACCGCAGCCTCGTACAAAGAGCGAACCCCGCTTCATGTTGCGGC
TTCTGGCGGGAAGGAGGCTGCTGCGAAGGCGCTCATGATGGCCGGAGCGG
ATGTACACTCCCTCGACACCGATCAGGACACTCCGCTTCACTTGGCCATC
GAAGGCGGTTACGTAGAACTTGCCGAGGACCTGCTGCTCAGCGGAGCTGA
TCCCAACGCCAAAGGTTCAAGAGGCTCCTACCCTATTCAGCTCGCTGCTG
GCCGTGGCCAGGATGAGGTAGTCTCGGCCTTGGTGCAAAAGGGAGCGAGC
CTGAACTGCCTCGATGCGGTAGGGAAGACCCCGCTCTACCTGGGGGTTGT
CGAGGACCGCGTGTCCACGGTGAAACTTCTCCTGGCTGCGGGTGCCGATG
CAAGCTTTCGCCTGGCCAATGCGACGACCGTCCTACACGTAGCCGCGGAG
TATAACGAAGCCGGTGCCATCGTTCCTCTCGTTGAGGCTGGGGCTGATAT
CGAGGCCCGGAGCAAAAGCGGACAGACCCCGCTGTGGTTTTCGGCTTTCT
ACGACTCGTACACCGCCATGCTCGCGCTGCTGAAACTCGCAGCCGACGTG
AACTCGGTAGGCACCTACGGATCGACACCCTTGCACGCCGCGTGCAAGAG
AGGCCACGCAGACGTTGCACGCCTGCTGTTGAGATGGGGCGCAGACGAGA
CCATCGTCGACAACCGTGGCCGAACTGCCTACCAGAGGTTGCCAGCGATC
GACAACGTGGTCGAAGAATACCGCCGCGGAATCGAGCGTCTGTCCAAGGT
ACTGGCACGCGCCCCGCAAGACAGAGCCTGGTGCCGCCGGGGCTTCCTCG
TCATGTGCCGTGCCCGTCCAGACATGGTGCGGCTAAAAACAGCAGAGATC
TTAGATCCGACAGCGGCTGGCAACCAGCCACAGGAACGAGACGAAGGACT
CGTTGGTTTGGCAGCACGGCTGGTGAAGCTAGCCGACGAGGACGTGTTCC
GCAAGGTCGTGGGACTGCTGTAGATGCCGCGTTCCTCGCGTTACGAAGAC
CGTGCCAACATCCTGCGGGGCTCCGAAGACACGATCTTCAGACTGGTGTG
CGATAGGGCCACGCCAGAACAGTGGGCGGAGTGGCTGAGGGCTCCGTTAG
AGCATGCGGCGGCCACAGCGGACCATGACCTGGTGAAGAAGCTGCTGAAC
GCCGGAGCGAACGGGAGCACGGGTTGGGTGGGTTGCGATGGCAAGACCCT
GTTGCACGCAGCTGCCGAGGGCGGTAACGCGCAGGTGATCATGGCGCTGC
TGAGGGCAGGGGCGGCAGGGGACAAGGACACCGCAGCCTCGTACAAAGAG
CGAACCCCGCTTCATGTTGCGGCTTCTGGCGGGAAGGAGGCTGCTGCGAA
GGCGCTCATGATGGCCGGAGCGGATGTACACTCCCTCGACACCGATCAGG
ACACTCCGCTTCACTTGGCCATCGAAGGCGGTTACGTAGAACTTGCCGAG
GACCTGCTGCTCAGCGGAGCTGATCCCAACGCCAAAGGTTCAAGAGGCTC
CTACCCTATTCAGCTCGCTGCTGGCCGTGGCCAGGATGAGGTAGTCTCGG
CCTTGGTGCAAAAGGGAGCGAGCCTGAACTGCCTCGATGCGGTAGGGAAG
ACCCCGCTCTACCTGGGGGTTGTCGAGGACCGCGTGTCCACGGTGAAACT
TCTCCTGGCTGCGGGTGCCGATGCAAGCTTTCGCCTGGCCAATGCGACGA
CCGTCCTACACGTAGCCGCGGAGTATAACGAAGCCGGTGCCATCGTTCCT
CTCGTTGAGGCTGGGGCTGATATCGAGGCCCGGAGCAAAAGCGGACAGAC
CCCGCTGTGGTTTTCGGCTTTCTACGACTCGTACACCGCCATGCTCGCGC
TGCTGAAACTCGCAGCCGACGTGAACTCGGTAGGCACCTACGGATCGACA
CCCTTGCACGCCGCGTGCAAGAGAGGCCACGCAGACGTTGCACGCCTGCT
GTTGAGATGGGGCGCAGACGAGACCATCGTCGACAACCGTGGCCGAACTG
CCTACCAGAGGTTGCCAGCGATCGACAACGTGGTCGAAGAATACCGCCGC
GGAATCGAGCGTCTGTCCAAGGTACTGGCACGCGCCCCGCAAGACAGAGC
CTGGTGCCGCCGGGGCTTCCTCGTCATGTGCCGTGCCCGTCCAGACATGG
TGCGGCTAAAAACAGCAGAGATCTTAGATCCGACAGCGGCTGGCAACCAG
CCACAGGAACGAGACGAAGGACTCGTTGGTTTGGCAGCACGGCTGGTGAA
GCTAGCCGACGAGGACGTGTTCCGCAAGGTCGTGGGACTGCTGTAG back to top
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