mRNA_Ecto-sp9_F_contig10594.538.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10594.538.1
Unique NamemRNA_Ecto-sp9_F_contig10594.538.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10594.538.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE07_ECTSI)

HSP 1 Score: 436 bits (1122), Expect = 2.010e-150
Identity = 219/225 (97.33%), Postives = 223/225 (99.11%), Query Frame = 1 
Query:    1 VNLTRIRFVSAVLGSFRGPPAAGALKKEQTLRDIVTAPRGRTRSIVVAPEAARTNGAGILQLSRVFDSLAHPPSGDTSGYVAQPAVHLVTFSYNRGGSGDGGGRGGFSPAQPVGSALRQLFWLCSQLSRTTMEVSWVAAADVPRFPMRAISRVSSDPSRKFPGPSQLQTPAAWTEEIRSLMAAMIGRPKLALGSKDFASFVEYYDLVSRGDKAGAAALADSRSKN 675
            VNLTRIRFVSAVLGSFRGPPAAGALKKEQTLRDIVTAPRGRTRSIVVAPEAARTNGAG+LQLSRVFDSLAHPPSGDTSGYVAQPAVHLVTFSYNRGG GDGGGRGGFSPAQPVGSALRQLFWLCSQLSRTTMEVSWVAAADVPRFPMRAISR+SSDPSRKFPGPSQLQTPAAWTEEIRSLMAAMIGRPKLALGSKDFA+FV YYDLVS+GDKAGAAALADSRSKN
Sbjct:  196 VNLTRIRFVSAVLGSFRGPPAAGALKKEQTLRDIVTAPRGRTRSIVVAPEAARTNGAGVLQLSRVFDSLAHPPSGDTSGYVAQPAVHLVTFSYNRGGRGDGGGRGGFSPAQPVGSALRQLFWLCSQLSRTTMEVSWVAAADVPRFPMRAISRISSDPSRKFPGPSQLQTPAAWTEEIRSLMAAMIGRPKLALGSKDFATFVAYYDLVSKGDKAGAAALADSRSKN 420
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BLAST of mRNA_Ecto-sp9_F_contig10594.538.1 vs.
Match: PlsC (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRK5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.860e-19
Identity = 74/209 (35.41%), Postives = 102/209 (48.80%), Query Frame = 1 
Query:   55 PPAAGALKKEQTLRDIVTAPRGRTRSIVVAPEAARTNGAGILQLSR-VFDSL--AHPPSGDTSGYVAQPAVHLVTFSYNRGGSGDGGGRGGFSPAQPVGSALRQLFWLCSQLSRTTMEVSWVAAADVPRFPMRAISRVSSDPSRKFPGPSQLQTPAAWTEEIRSLMAAMIGRPKLALGSKDFASFVEYYDLVSRGDKAGAAALADSRSK 672
            PP A      Q L  +    + + R++VV PE AR+NG G+L   R V D         G  +G      V++  F ++         +G   P   VGS       L S+  RTT+ VS+V A D+          +    S K  G S  +TP   +EE+RSL+A M+GRPKL LG +DF SF +YY  +  GD+ GAAALA +R K
Sbjct:  218 PPKAFETGAGQALSSLAAEAKRQGRAVVVFPETARSNGDGVLVFQRGVLDGADAKEAKGGKITGGERGGGVNVHIFGFSA-------PKGEVLPTHTVGSIFGFYLQLLSRW-RTTVNVSYVGAPDL----------LLQSTSAKGSGGSS-RTPVYSSEELRSLLANMLGRPKLNLGYEDFCSFRKYYAAIRAGDEEGAAALARAREK 407
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BLAST of mRNA_Ecto-sp9_F_contig10594.538.1 vs.
Match: Light (harvesting complex protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZX9_NANGC)

HSP 1 Score: 82.0 bits (201), Expect = 9.140e-14
Identity = 73/203 (35.96%), Postives = 95/203 (46.80%), Query Frame = 1 
Query:   55 PPAAGALKKEQTLRDIVTAPRGRTRSIVVAPEAARTNGAGILQLSRVFDSLAHPPSGDTSGYVAQPAVHLVTFSYNRGGSGDGGGRGGFSPAQPVGSALRQLFWLCSQLSR--TTMEVSWVAAADVPRFPMRAISRVSSDPSRKFPGPSQLQTPAAWTEEIRSLMAAMIGRPKLALGSKDFASFVEYYDLVSRGDKAGAAALA 657
            PP A      Q L  +    + + +++VV PE AR+NG G+L   R          G   G  A+ A         +GG   GG RGG       G        L   LSR  TT+ VS+V A D+   P  A  + S   SR         TP   +EE+RSL+A M+GRPKL LG +DF SF +YY  +  GD+  AAALA
Sbjct:  252 PPKAFETGTGQALSSLAAEAKRQGQAVVVFPETARSNGDGVLVFQR----------GVLDGTDAKEA---------KGGKLTGGERGGGVNVHIFGFRCD----LADLLSRWRTTVNVSYVGAPDLLLQPTSA--KGSGGSSR---------TPVYSSEELRSLLANMLGRPKLNLGYEDFCSFRKYYAAIRAGDEERAAALA 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10594.538.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.010e-15097.33protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE07... [more]
PlsC5.860e-1935.41domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Light9.140e-1435.96harvesting complex protein (Fragment) n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10594contigEcto-sp9_F_contig10594:99..3710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D8LE07
EggNOG OGs28MBJ@1,2QTUZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004520.1
Exons6
Model size881
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10594.538.1prot_Ecto-sp9_F_contig10594.538.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10594 302..1396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928275.643042-UTR-Ecto-sp9_F_contig10594:98..3011622928275.643042-UTR-Ecto-sp9_F_contig10594:98..301Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 99..301 -
1692277817.5661356-UTR-Ecto-sp9_F_contig10594:98..3011692277817.5661356-UTR-Ecto-sp9_F_contig10594:98..301Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 99..301 -
1622928276.6742704-UTR-Ecto-sp9_F_contig10594:1396..14111622928276.6742704-UTR-Ecto-sp9_F_contig10594:1396..1411Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 1397..1411 -
1692277817.6064022-UTR-Ecto-sp9_F_contig10594:1396..14111692277817.6064022-UTR-Ecto-sp9_F_contig10594:1396..1411Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 1397..1411 -
1622928276.685153-UTR-Ecto-sp9_F_contig10594:1955..21831622928276.685153-UTR-Ecto-sp9_F_contig10594:1955..2183Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 1956..2183 -
1692277817.6145036-UTR-Ecto-sp9_F_contig10594:1955..21831692277817.6145036-UTR-Ecto-sp9_F_contig10594:1955..2183Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 1956..2183 -
1622928276.6967962-UTR-Ecto-sp9_F_contig10594:2614..26831622928276.6967962-UTR-Ecto-sp9_F_contig10594:2614..2683Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 2615..2683 -
1692277817.6232555-UTR-Ecto-sp9_F_contig10594:2614..26831692277817.6232555-UTR-Ecto-sp9_F_contig10594:2614..2683Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 2615..2683 -
1622928276.7120728-UTR-Ecto-sp9_F_contig10594:3629..37101622928276.7120728-UTR-Ecto-sp9_F_contig10594:3629..3710Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 3630..3710 -
1692277817.6319208-UTR-Ecto-sp9_F_contig10594:3629..37101692277817.6319208-UTR-Ecto-sp9_F_contig10594:3629..3710Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10594 3630..3710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928275.6548777-CDS-Ecto-sp9_F_contig10594:301..4511622928275.6548777-CDS-Ecto-sp9_F_contig10594:301..451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 302..451 -
1692277817.5758622-CDS-Ecto-sp9_F_contig10594:301..4511692277817.5758622-CDS-Ecto-sp9_F_contig10594:301..451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 302..451 -
1622928275.670271-CDS-Ecto-sp9_F_contig10594:903..9881622928275.670271-CDS-Ecto-sp9_F_contig10594:903..988Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 904..988 -
1692277817.58823-CDS-Ecto-sp9_F_contig10594:903..9881692277817.58823-CDS-Ecto-sp9_F_contig10594:903..988Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 904..988 -
1622928276.588823-CDS-Ecto-sp9_F_contig10594:1346..13961622928276.588823-CDS-Ecto-sp9_F_contig10594:1346..1396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 1347..1396 -
1692277817.598755-CDS-Ecto-sp9_F_contig10594:1346..13961692277817.598755-CDS-Ecto-sp9_F_contig10594:1346..1396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10594 1347..1396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10594.538.1

>prot_Ecto-sp9_F_contig10594.538.1 ID=prot_Ecto-sp9_F_contig10594.538.1|Name=mRNA_Ecto-sp9_F_contig10594.538.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=95bp
MEVSWVAAADVPRFPMRAISRVSSDPSRKFPGPSQLQTPAAWTEEIRSLM
AAMIGRPKLALGSKDFASFVEYYDLVSRGDKAGAAALADSRSKN*
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mRNA from alignment at Ecto-sp9_F_contig10594:99..3710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10594.538.1 ID=mRNA_Ecto-sp9_F_contig10594.538.1|Name=mRNA_Ecto-sp9_F_contig10594.538.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3612bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10594:99..3710- (Ectocarpus species9 EcSCA_722f female)
GTGAATTTGACTAGAATCCGGTTCGTCTCTGCGGTGCTGGGCTCGTTCCG
GGGGCCTCCTGCTGCCGGCGCCCTCAAGAAGGTACACAGCAAGGGGCAAC
GCGTGCATTGTAGTGTTTGTGCTGTTTTTTTGCACACATGGTTGTTGTCT
TCTTTACATTGAAAATGCTCTGATCTCTGTCCAGCACCTTCGAACATCGG
TGCCCGTTCCAACTGACGCGGACGCGTTCCGTCATAGGCGAGCTACCCGA
ACGTGTGGCGATGTACTTTCCGGTGTGTTTTTCAGCGCAAGCCGAATGTT
GTATGCTGTGTACTACGCCCTTTCAAGCGGCTTTGCCGTTCGTTTTCGGT
CACCAGGAGTGCGCCGATACTCAAGCCGTGTGGCATCTCTGACTGCCGTC
AGGGGCAACAGCAACACTCCGAAATGGGTGCATCGTGACTACCGTACTGA
GTGTTGAATAAATAATGTAGCGATTTTGGGTATGCTATCTTACGTTCCGA
CGAAAGTCCTCGATATCGTCCAATTTTTTTGCGCAACTCGTGTCTTTACC
GCTTGCCGCTTCACGAGGCCCGTTCGACACGCACGAAAGACACACGTTTC
GCCTTTTGACACGGGCGGTATTTCAAGTCGATGGAGCGGTGTAGACCGGC
TGGTATATACCACTGTTCTGCAGAATACACCCACACCTGTTGACGACGAC
GACACGTTTGGTACCTTTAGGTGGAGAAAGGACTATAGCCTCAAGGTACG
AATCGCTGTCTTGTCAATATATTACCACCATCCACCAATGACTATTGAGG
TCTTTTTACATCCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCGC
TCCTTTTACCACCCCGAGGCAGCGCGACGCCCCCGCCCCCNNNNNNNNNN
AAAAGACTATAGCCCCAAGGTACAAATCGCTGTCTTGTCAATAAATTACC
CCCCCCCCCCAAAAACTTTTGGGGTCTTTTTTCCCCCCCCCCCCCCCCCC
CCCCCCGTCTGATTCTTGTGTGTACAGGAGCAAACTTTGCGTGACATCGT
CACGGCACCACGAGGAAGGACGCGCTCTATCGTCGTCGCCCCCGAGGTGA
CCAACCAAAAATACCTTCGTGAATACATCAATTTTATGCATACTCCTTCA
GAAGGCATCATCGCCCACCCCCCCGAAAAAATAAGCAAAAGGCAGTATTT
AGAAGTATTTGGGTAGACAGCGGGCACGATACGTCTGACCCTCCAGCAGA
TTGTCTCTTTTTTTGTTAGGTGGCTTGGCCGGGGTCGCTTGTCGTGCACA
CGGCGCACAACGTGGCAACTCTTTCGACCTTGTGTACATATATTAATTCA
TCGTATTTAGCGAAAACGCGAGGGATTAACCACCACCTCCAGGCTTGTTC
TTCAGCGTTGGTTGTTGGACCTATGCATACGACAGTCTCTGCAAATACAA
GTGTTAAATAAACACTTTCGCCGCGGTCGAGTTCCCCTTAAACCGTCCTC
TACTGCTGTACCCCCGTCCTTGCTCAGGCGGCGCGCACAAACGGAGCCGG
GATCTTGCAGCTATCCCGGGTGTTCGACTCCTTGGCGCATCCCCCCTCAG
GGGACACCAGCGGCTACGTAGCCCAGCCGGCGGTGCACCTGGTGACGTTT
TCGTACAACAGGGGCGGCAGCGGCGACGGCGGGGGGCGGGGGGGGTTCAG
CCCGGCTCAGCCCGTGGGGTCGGCGTTGCGGCAGCTCTTCTGGCTTTGCT
CTCAGGTGTGCCACGTTTGCTAGAAAAACAAATAGATAGTTGGAGTAATA
AACGTGTTGCCGGACGCGATGTGATGAATTGTGGAGCTGCAATGAGCCTC
GGCGGTATACGTCGGGATAAACGCTAAGTTTTGCGGGTCCTTGCCTGGCG
TTGGCGTTTTTTTCGTGGCGATGCCCACCTTTGGTAGGGCTCCTTGATGT
GGCGGCTGCCGCGTTGTCGCTGCTGTGGGCTCCTGCGGTCATGAACACCC
TCCCCACTTTTTGTCCATGGTGCTGCTCTTATTGTACACGGGAAGTAGAA
TTGTCGTGCGGAACATTTCGTGAAGGGTGCACCAATCGCCCTTCCTTACC
ACGGGGCTTCGTTGCCCGCTGGATTGTTGTGGCGCTTATAAGCAGTGTTG
AAAACACATGGCCCTCTTTCCTGCCGAAGTCCTACCCTGGGAAGTCTTAC
CACAGAATTTTGTGTTTGATGCGCTGTAATACATGTAGACGAATTAAGGC
CCTTCGTCATGCGCTCCCACCCACTGCCCTCTCACTCCGGCCAACACAGT
TGTCGCGAACCACGATGGAAGTTTCTTGGGTGGCGGCTGCAGACGTGCCC
AGGTTTCCAATGAGGTGAGAGGCGTTGTGGACCGCGTATGGCGGCCTGCG
ACACAACGTGAACGACTGTGAAAACGGTATGACAGGTACACCATGGGCGG
CATCAATAAATTGTGTTGGCGAGGTGATGCTGAACGGAACCCTCACGGAT
GCCGCTGCCCGCCGTTCAGGCACACCCCGCTAAGCGTTTGGTTTGTCCTT
GTGGTGACGAACGCCCTATTTAACGGCTTTGCTTACTTTCCTAGGTTCAT
GATGGGAACCATCCCGTCCCCCTATTTCGAATATGCCCGCAGACACCCCC
CCCTCCCCCCCCGTCCGCTCTCTCTCGTTATTTCTGGTCTCTTGGCGTGG
CTACGGTTTGATGTGGAATCAGGGCGATCAGTCGCGTTTCCTCAGATCCT
TCTCGGAAGTTTCCTGGCCCGTCTCAGCTGCAGACGCCAGCGGCTTGGAC
AGAGGAGGTGAGACAAGAGCCAAATGTTTTGGTCTGTGTTAGAGCCAAAT
GTTTTACAAAGTCTGAGTTGGCCTGGTACAGACTGGAAGGGGCCGTCTGG
GGGCGGTTTGGCAATCGCACAAAAAGCTCACCAGAGTTTTGGGGTACTGT
TGCGGTTGTACCGTTGGCACACCTCCGCATGCACCCCACCTACATAGCCC
AAGTTTGTCCACTCCCACCCCCTGTGATCGTGCTCTCTCCAACTCGCCTA
CGTACGCTGCTTACACGGCACGGTGTGTCTCGCACGTCTCGTTACTCCTT
GAACCACTCGGTGTGGTGCGGCTGATTGTGTTGGTCGCACCGTATGCTCT
TGGGCTGCCTATTGCTCCCCCATCTCCCCACACACTCTCGAATCCCCAAC
CCTCTTGGTGGTGGCCACGACTCAACACCCTGATTGTCTCGCCCCGTTCC
GTTGCGAAGATTCGGTCGCTGATGGCGGCGATGATCGGACGGCCCAAGCT
TGCGCTCGGCAGCAAGGACTTCGCCTCCTTCGTAGAATACTACGACCTGG
TCAGCAGGGGAGACAAGGCTGGGGCGGCCGCGCTCGCAGACTCTCGCAGC
AAGAACTGATGTGCTGTTTCGGGTTGATCGTGTCATCTTGTTCCGTTTGG
TGTTTTGCTTGGTTGGGCCTGGTTTCATGGCAAGTCGATGTCGTTACCGT
TGTTGGTGTGTGTCCCAATGGGGACACGGTGTGTTGGGGCTCGAGGCTGG
TTGTTCAAGATGCCGTGGTTGTGCGGCAAAAGGAAGCAAGGCCAAGGCCA
CGTGAATGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10594:99..3710-

>mRNA_Ecto-sp9_F_contig10594.538.1 ID=mRNA_Ecto-sp9_F_contig10594.538.1|Name=mRNA_Ecto-sp9_F_contig10594.538.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10594:99..3710- (Ectocarpus species9 EcSCA_722f female)
ATGGAAGTTTCTTGGGTGGCGGCTGCAGACGTGCCCAGGTTTCCAATGAG
ATGGAAGTTTCTTGGGTGGCGGCTGCAGACGTGCCCAGGTTTCCAATGAG
GGCGATCAGTCGCGTTTCCTCAGATCCTTCTCGGAAGTTTCCTGGCCCGT
CTCAGCTGCAGACGCCAGCGGCTTGGACAGAGGAGGGCGATCAGTCGCGT
TTCCTCAGATCCTTCTCGGAAGTTTCCTGGCCCGTCTCAGCTGCAGACGC
CAGCGGCTTGGACAGAGGAGATTCGGTCGCTGATGGCGGCGATGATCGGA
CGGCCCAAGCTTGCGCTCGGCAGCAAGGACTTCGCCTCCTTCGTAGAATA
CTACGACCTGGTCAGCAGGGGAGACAAGGCTGGGGCGGCCGCGCTCGCAG
ACTCTCGCAGCAAGAACTGAATTCGGTCGCTGATGGCGGCGATGATCGGA
CGGCCCAAGCTTGCGCTCGGCAGCAAGGACTTCGCCTCCTTCGTAGAATA
CTACGACCTGGTCAGCAGGGGAGACAAGGCTGGGGCGGCCGCGCTCGCAG
ACTCTCGCAGCAAGAACTGA
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