mRNA_Ecto-sp9_F_contig10589.533.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: Similar (to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 8.780e-136 Identity = 258/353 (73.09%), Postives = 262/353 (74.22%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGV------------------------------------------------------------------------------HPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRV 825
F LV + +AENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVV HVQSYIDEFDF VSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEA AGPITLGSNSS XXXXXAVTPK+IVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGV HPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPR+
Sbjct: 475 FLDLVLFLDRAKAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYIDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEADAGPITLGSNSSXXXXXXXXAVTPKEIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVVSAARKWRRAGFSPARPEXXXXXXXXXXXXXXXXXXXXXXXXXXVGEATVVDFGVMSPGSXXXXXAPPAGGRAVAGEEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRI 827
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 2.100e-121 Identity = 234/329 (71.12%), Postives = 240/329 (72.95%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGV------------------------------------------------------HPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRV 825
F LV + +AENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVV HVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQ F L VA G + G AV+PKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREA+GV HPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPR+
Sbjct: 362 FLDLVLFLDRAKAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQVSFPGI-----LSYVALMFKRGESCGSGGGGG--AVSPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAQGVISAARKWRRAGFSPARPERAMGKMDAIDFGVMSPGSPASPVAPPAEGRAVAGDEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRI 683
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA) HSP 1 Score: 223 bits (569), Expect = 9.200e-63 Identity = 129/281 (45.91%), Postives = 163/281 (58.01%), Query Frame = 1
Query: 10 LVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIG-----LRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGV------HPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 819
LV L+ + ++ PCLF + AEVK+S G++K CQF+ GEGD V+HLKK+GY V+HVQ Y+DE+DF V++L DLRDGVRL RL E++T G +G LRVP V R QK+ NT A+ RL G + LG++ KDIVDG + T+ LLW +I+RY LS+L+D AL RE V L LP + G L AL VW QAVCHGYGVP+ NFTTSFADGRALCLL+H+YHP
Sbjct: 547 LVLLLDRAKTLEIMEGTPCLFLREAEVKTSEGIIKGLCQFMRGEGDVVKHLKKLGYKVSHVQRYVDEYDFTVTSLKTDLRDGVRLVRLAELLTQGTGKPVGQLTSQLRVPPVDRTQKMHNTGLAVARL-VEDGALPLGTHE--------IGEAAKDIVDGHQGRTIGLLWAVISRYKLSSLVDVQALTREITAVVRVQRKRQQLGLPTL---------HDGPRLCLPSAEAIGLSGHGDLQQALAVWAQAVCHGYGVPIHNFTTSFADGRALCLLVHHYHP 809
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPU1_9STRA) HSP 1 Score: 200 bits (509), Expect = 9.670e-55 Identity = 115/279 (41.22%), Postives = 159/279 (56.99%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFC-QFLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGL--RVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPD-VAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRV 825
F LV + ++ENLL+ PCLF VKSS ML FC + L GEG+ +RHL +G V++ Q IDE+DF V NLAVDLRDGVRL RL+E+++G+ +++ L R+PAVSRLQK+ N + AL L S G V+PK +VDG + L+LLW I + LS L++ DAL RE VH + + + + + +E A LL L WCQ +C +G+ ++NF+TSFADG+ALC L+HYYHP +
Sbjct: 699 FLLLVVFLDRGKSENLLNTIPCLFHSKGLVKSSRDMLLSFCRECLSGEGNIIRHLSYIGLTVSYEQKLIDEYDFSVKNLAVDLRDGVRLGRLVELLSGDDAVSLSLQMRLPAVSRLQKLHNVRLALSSL-------------SFHGVPDIDDVSPKHVVDGHQSKVLKLLWSTIAHFKLSTLINEDALEREIRNVHRSNKRRNKLRSRLADFETNAARDSLSEEHIPNYKDQIAVLL---LTWCQTICSSFGLAIKNFSTSFADGKALCYLIHYYHPGI 961
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: abnormal (spindle-like microcephaly-associated protein homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138F9FE1) HSP 1 Score: 197 bits (500), Expect = 1.680e-53 Identity = 110/274 (40.15%), Postives = 150/274 (54.74%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQ-FLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 819
F LV + + L+ PCLF + AE K+S +L F + +L GEGD +HL +G+ V+H Q IDEFD+ V+N+A DLRDG+RLTR++E+++ W L LRVPA+SRLQKI N + L+ L+ P+ G S + TP+ IVDG R TL LLW II + ++ LL + L E + L+L A + G L LL WC+ VC YG+ + NFT SF+DGRALC LLH+YHP
Sbjct: 698 FLLLVLFLDHAKLTRLIDHDPCLFNRDAEFKASRDLLLTFSRDYLKGEGDLTKHLSYLGFNVSHQQRAIDEFDYAVTNIATDLRDGLRLTRVVELLSHNWRLTSTLRVPAISRLQKIHNVEVVLKALKDHGVPVGEGEGSGI---------TPRHIVDGHREKTLNLLWMIIVNFQVNILLSEEKLKEEISFLEQSLDLEHCLAACDV-SRIMGLPRNKRDSLESGLYFKSARLGLLLKWCRLVCKSYGLKIDNFTVSFSDGRALCYLLHHYHP 961
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: LOW (QUALITY PROTEIN: abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014586E23) HSP 1 Score: 195 bits (496), Expect = 5.850e-53 Identity = 108/274 (39.42%), Postives = 154/274 (56.20%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQ-FLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 819
F L+ + ++ L++ PCLF K +E KS+ ML F + +L GEGD +HL +GYVV H Q+ +DEFD+ V+NLA DLRDGVRLTR++E++T W L+ LR PA+SRLQK+ N + + L A +T + T KDIVDG R TL +LW +I +Y + LL++D L E + L + + A ++ +E+ G L LL WC+ VC Y + + NFT SF DGRA+C L+H+YHP
Sbjct: 1389 FFMLIFFLDKAKSHRLINHDPCLFCKDSEYKSTKAMLIQFSRNYLSGEGDVTKHLGYLGYVVTHQQTSMDEFDYAVTNLATDLRDGVRLTRVLELLTNHWDLSKTLRAPAISRLQKVHNMEVVFKALTAQG--VTFDKEKKI---------TTKDIVDGHREKTLHVLWALILQYQVDVLLNKDQLKEEINILQRSLSVRNQLADLQRYEQ--GLSKKRRESAEQDLHMQSDSLLLLLRWCRTVCAFYHIKIENFTVSFGDGRAMCALVHHYHP 1649
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: abnormal (spindle-like microcephaly-associated protein homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQ79_ACTTE) HSP 1 Score: 195 bits (495), Expect = 7.850e-53 Identity = 112/277 (40.43%), Postives = 155/277 (55.96%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFC-QFLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPD-VAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRV 825
F FLV + + L+ PCLF K AE KSS +L F ++L GEGD +HL +G+ V H Q IDEF++ V+N+A DLRDG+RLTR++E++T W L LRVPA+SRLQKI N + ++ L P+ G++S ++ P+ IVDG R TL+LLW II + ++ LL+ L E + EL + + + + G LS LL WC+ VC +G+ V NFT SF+DGRALC LLHYYHP +
Sbjct: 696 FLFLVLFLDRAKLTRLIDHDPCLFVKNAEYKSSRSLLLTFSREYLKGEGDITKHLSYLGFSVNHEQRPIDEFNYAVTNIATDLRDGLRLTRVVELLTHNWQLTQSLRVPAISRLQKIHNVEVFMKALRDRNVPVGEGTDSGIN---------PRHIVDGHREKTLQLLWLIIFNFQVNILLNEKQLQEEISFLDQNQELQNRLDTITVDGSKILGLPRSKRESLENNIYFKSPRLSLLLKWCRHVCKLFGMKVENFTVSFSDGRALCYLLHYYHPNL 963
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: Abnormal (spindle-like microcephaly-associated protein-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QLT1_MIZYE) HSP 1 Score: 191 bits (484), Expect = 2.360e-51 Identity = 103/274 (37.59%), Postives = 152/274 (55.47%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQ-FLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 819
F L+ + ++ L++ PCLF K +E KS+ ML F + +L GEGD +HL +GYVV H Q+ +DEFD+ V+NLA DLRDG+RLTR++E++T W L+ LR PA+SRLQK+ N + + L +T + + TPKD+ DG R TL +LW +I +Y + LL+ + L E + + L + + + +E+ G L LL WC+ VC Y + + NFT SF DGRA+C L+H+YHP
Sbjct: 1415 FFMLIFFLDQAKSNRLINHDPCLFCKDSEFKSTKAMLIQFSRNYLSGEGDVTKHLGYLGYVVTHQQTSMDEFDYAVTNLATDLRDGIRLTRILELLTNHWDLSKKLRTPAISRLQKVHNMEVVFKALTTQG--VTFDNEKKI---------TPKDLCDGHREKTLHVLWGLILQYQVDVLLNEEQLREEIDILQRSLRVRNQLEALHRYEQ--GLSKKRRESAEQDLHMQNDRLLLLLRWCRTVCAFYHIKIENFTVSFGDGRAMCALVHHYHP 1675
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: abnormal (spindle-like microcephaly-associated protein homolog n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KBD7_LINUN) HSP 1 Score: 190 bits (483), Expect = 3.180e-51 Identity = 109/275 (39.64%), Postives = 151/275 (54.91%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQ-FLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXL-LSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHP 819
F LV + + L+ PCLF K +E K+S +L F + +L GEGD +RHL +G + H Q+ +DEFDF V+ L+ DLRDGVRL R++E++T +W L+ LRVPA+SRLQKI N + AL+ L +T A+ P+D+VDG R TL +LW +I + + LL+ D L E + + L + V +E G LS LL WC+AVC Y + V NFT SF+DGRALC L+H+YHP
Sbjct: 1262 FLVLVFFLDTAKKARLIEHDPCLFCKDSEFKASRDLLLQFSRDYLRGEGDIIRHLGYLGCQITHAQTALDEFDFAVTKLSKDLRDGVRLARIVELLTRDWSLSSLLRVPAISRLQKIHNVEVALKALANRGLDVTTPQGG---------AINPRDVVDGHREKTLAMLWRVIFNFQVDVLLNLDQLREEVDFLKKTLCVKTHLTAVLNYENDLGLERGGRRESMEPDLYFKSNGLSLLLKWCKAVCAFYNLEVENFTVSFSDGRALCYLVHHYHP 1527
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Match: abnormal (spindle-like microcephaly-associated protein homolog n=3 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7E8F0_HYDVU) HSP 1 Score: 190 bits (482), Expect = 4.270e-51 Identity = 115/277 (41.52%), Postives = 154/277 (55.60%), Query Frame = 1
Query: 1 FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQ-FLHGEGDFVRHLKKMGYVVAHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQKIFNTKRALERLEAVAGPITLGSNSSVSGXXXXXAVTPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVHPPLEL-PDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRV 825
F LV + + L+ PCLF K +E K+S +L F + +L GEGD +HL MG VV H QS IDE+DF + NLAVDLRDGVRL R++E++T +W + LR+PAVSRLQKI N AL L+ G N S+ PK++VDG R TL LLW II + ++ LLD + L E E L++ ++A++ E E G ++ LL WCQ +C Y V V NFT SF+DG ALC L++YYHP +
Sbjct: 534 FLLLVIFLDRAKQNRLIEHDPCLFLKNSEFKTSRDLLLAFSRDYLKGEGDITKHLSYMGIVVQHQQSVIDEYDFGLKNLAVDLRDGVRLVRVLELLTKDWSHSSKLRLPAVSRLQKIHNNSVALGILK------NHGLNLSIE---------PKNVVDGHREKTLMLLWQIIFHFEVNMLLDIEKLKEEIEYQKKRLQVNKELASLSESLPESHGELISAYEKSEK--------MTLLLNWCQIICSHYEVKVENFTVSFSDGIALCCLVNYYHPDI 787 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10589.533.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10589.533.1 >prot_Ecto-sp9_F_contig10589.533.1 ID=prot_Ecto-sp9_F_contig10589.533.1|Name=mRNA_Ecto-sp9_F_contig10589.533.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=275bp FSFLVSLVSPFQAENLLHPCPCLFRKTAEVKSSVGMLKVFCQFLHGEGDFback to top mRNA from alignment at Ecto-sp9_F_contig10589:789..2830+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10589.533.1 ID=mRNA_Ecto-sp9_F_contig10589.533.1|Name=mRNA_Ecto-sp9_F_contig10589.533.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2042bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10589:789..2830+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10589:789..2830+ >mRNA_Ecto-sp9_F_contig10589.533.1 ID=mRNA_Ecto-sp9_F_contig10589.533.1|Name=mRNA_Ecto-sp9_F_contig10589.533.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1650bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10589:789..2830+ (Ectocarpus species9 EcSCA_722f female)back to top |