mRNA_Ecto-sp9_F_contig10588.532.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Topoisomerase (6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI) HSP 1 Score: 212 bits (540), Expect = 9.510e-63 Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
WHY EDISPEFCMALSLLHRAYGCRVQETGHK VGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT
Sbjct: 253 WHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 355
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: DOT1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.090e-62 Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
WHY+EDISPEFCMALSLLHRAYGCRVQETGH+ VGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT
Sbjct: 250 WHYEEDISPEFCMALSLLHRAYGCRVQETGHRTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 352
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW16_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.950e-38 Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
W + ED+S F A S+LH YG R QETGHK +GH CVTD D+ A E +GSLLYGELLPRGV+KA+ RHL+AA+AS++YDLG GTGKVA+Q FLQFPNL
Sbjct: 127 WTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDRRRATEDRGSLLYGELLPRGVHKALDARHLDAARASSVYDLGCGTGKVALQAFLQFPNL 228
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGR3_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.380e-37 Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
W + ED+S + A S LH YG RVQETGHK VGHTCVT+ DK A + +GSLLYGELLPRGVNKA+ RH++A +A+ ++DLGMGTGKV MQ FLQFPNL
Sbjct: 143 WTFAEDLSLLYAKAQSTLHECYGSRVQETGHKTVGHTCVTEEDKRRASQNRGSLLYGELLPRGVNKALDERHMDARRATILFDLGMGTGKVPMQAFLQFPNL 244
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX67_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.610e-37 Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
W + ED+S F A S+LH YG R QETGHK +GH CVTD D+ A E +GSLLYGELLPRGV+KA+ RHL+AA+AS++YDLG GTGKVA+Q FLQFPNL
Sbjct: 127 WTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDRRRATEDRGSLLYGELLPRGVHKALDARHLDAARASSVYDLGCGTGKVALQAFLQFPNL 228
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH00_HETAK) HSP 1 Score: 138 bits (347), Expect = 7.760e-37 Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
WHY EDI+ E+ A S+L + Y R QETGHK GH CVT+ D+ A++ KGSLLYGELLPRGVNKA+G LNAA A +YDLGMG GKVAMQ FLQFP+L
Sbjct: 175 WHYCEDITIEYAHAQSVLQKVYEGRAQETGHKTAGHLCVTEEDRALAKQSKGSLLYGELLPRGVNKALGRGCLNAADARVVYDLGMGLGKVAMQAFLQFPHL 276
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRH5_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.400e-34 Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
W + EDIS ++ A S+L + YG +QETGH GHTC+TD D++ A+ VKGSLLYGELLPRG NKA GP LN + AS ++DLGMGTGK+ +Q FLQF NL
Sbjct: 175 WVFCEDISLDYTFAQSVLFKIYGNSIQETGHLTKGHTCLTDADRLNAQYVKGSLLYGELLPRGANKAFGPDRLNTSSASVLFDLGMGTGKILIQAFLQFKNL 276
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP71_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.310e-34 Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
W Y ED++ EF SLL + YG +QETGHK GH CVTD DK AR KGSLLYGELLPRG NKA P+ L+A A+ ++DLGMGTGK+A+Q FLQF NL
Sbjct: 175 WVYVEDLTLEFAFVQSLLFKIYGASIQETGHKTKGHVCVTDSDKERARVGKGSLLYGELLPRGANKAFSPKRLSAESATCLFDLGMGTGKIAIQAFLQFRNL 276
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: C2H2-type (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D5_9STRA) HSP 1 Score: 129 bits (324), Expect = 7.950e-33 Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
W Y E+IS + A +++HRAYG R+QETGHK GH CVT+ D+V A++ + SLLYGELLPRG+NKA+G L ++A +++LGMG GKVAMQVFLQF T
Sbjct: 178 WTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQDAQSSLLYGELLPRGINKALGDMRLRGSEAEVVFELGMGIGKVAMQVFLQFTGQT 280
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GL22_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.110e-32 Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
+ Y EDIS +FC+A S L+ YG RVQETGHK GH C+T DK A LLYGELLPRGVNKA+ P L+A +T+ DLGMGTGK+ +Q FLQ+PNLT
Sbjct: 164 YDYVEDISEDFCLAQSRLYHIYGRRVQETGHKTSGHVCITMNDKEQANAAYSCLLYGELLPRGVNKALSPARLHAKTRTTLIDLGMGTGKICIQAFLQYPNLT 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10588.532.1 >prot_Ecto-sp9_F_contig10588.532.1 ID=prot_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVback to top mRNA from alignment at Ecto-sp9_F_contig10588:3257..4330+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10588.532.1 ID=mRNA_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10588:3257..4330+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10588:3257..4330+ >mRNA_Ecto-sp9_F_contig10588.532.1 ID=mRNA_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10588:3257..4330+ (Ectocarpus species9 EcSCA_722f female)back to top |