mRNA_Ecto-sp9_F_contig10588.532.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10588.532.1
Unique NamemRNA_Ecto-sp9_F_contig10588.532.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Topoisomerase (6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 9.510e-63
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
            WHY EDISPEFCMALSLLHRAYGCRVQETGHK VGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT
Sbjct:  253 WHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 355          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: DOT1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.090e-62
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
            WHY+EDISPEFCMALSLLHRAYGCRVQETGH+ VGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT
Sbjct:  250 WHYEEDISPEFCMALSLLHRAYGCRVQETGHRTVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 352          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW16_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.950e-38
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            W + ED+S  F  A S+LH  YG R QETGHK +GH CVTD D+  A E +GSLLYGELLPRGV+KA+  RHL+AA+AS++YDLG GTGKVA+Q FLQFPNL
Sbjct:  127 WTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDRRRATEDRGSLLYGELLPRGVHKALDARHLDAARASSVYDLGCGTGKVALQAFLQFPNL 228          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGR3_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.380e-37
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            W + ED+S  +  A S LH  YG RVQETGHK VGHTCVT+ DK  A + +GSLLYGELLPRGVNKA+  RH++A +A+ ++DLGMGTGKV MQ FLQFPNL
Sbjct:  143 WTFAEDLSLLYAKAQSTLHECYGSRVQETGHKTVGHTCVTEEDKRRASQNRGSLLYGELLPRGVNKALDERHMDARRATILFDLGMGTGKVPMQAFLQFPNL 244          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX67_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.610e-37
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            W + ED+S  F  A S+LH  YG R QETGHK +GH CVTD D+  A E +GSLLYGELLPRGV+KA+  RHL+AA+AS++YDLG GTGKVA+Q FLQFPNL
Sbjct:  127 WTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDRRRATEDRGSLLYGELLPRGVHKALDARHLDAARASSVYDLGCGTGKVALQAFLQFPNL 228          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH00_HETAK)

HSP 1 Score: 138 bits (347), Expect = 7.760e-37
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            WHY EDI+ E+  A S+L + Y  R QETGHK  GH CVT+ D+  A++ KGSLLYGELLPRGVNKA+G   LNAA A  +YDLGMG GKVAMQ FLQFP+L
Sbjct:  175 WHYCEDITIEYAHAQSVLQKVYEGRAQETGHKTAGHLCVTEEDRALAKQSKGSLLYGELLPRGVNKALGRGCLNAADARVVYDLGMGLGKVAMQAFLQFPHL 276          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRH5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.400e-34
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            W + EDIS ++  A S+L + YG  +QETGH   GHTC+TD D++ A+ VKGSLLYGELLPRG NKA GP  LN + AS ++DLGMGTGK+ +Q FLQF NL
Sbjct:  175 WVFCEDISLDYTFAQSVLFKIYGNSIQETGHLTKGHTCLTDADRLNAQYVKGSLLYGELLPRGANKAFGPDRLNTSSASVLFDLGMGTGKILIQAFLQFKNL 276          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP71_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.310e-34
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNL 306
            W Y ED++ EF    SLL + YG  +QETGHK  GH CVTD DK  AR  KGSLLYGELLPRG NKA  P+ L+A  A+ ++DLGMGTGK+A+Q FLQF NL
Sbjct:  175 WVYVEDLTLEFAFVQSLLFKIYGASIQETGHKTKGHVCVTDSDKERARVGKGSLLYGELLPRGANKAFSPKRLSAESATCLFDLGMGTGKIAIQAFLQFRNL 276          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: C2H2-type (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 7.950e-33
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
            W Y E+IS  +  A +++HRAYG R+QETGHK  GH CVT+ D+V A++ + SLLYGELLPRG+NKA+G   L  ++A  +++LGMG GKVAMQVFLQF   T
Sbjct:  178 WTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQDAQSSLLYGELLPRGINKALGDMRLRGSEAEVVFELGMGIGKVAMQVFLQFTGQT 280          
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GL22_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.110e-32
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREVKGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFPNLT 309
            + Y EDIS +FC+A S L+  YG RVQETGHK  GH C+T  DK  A      LLYGELLPRGVNKA+ P  L+A   +T+ DLGMGTGK+ +Q FLQ+PNLT
Sbjct:  164 YDYVEDISEDFCLAQSRLYHIYGRRVQETGHKTSGHVCITMNDKEQANAAYSCLLYGELLPRGVNKALSPARLHAKTRTTLIDLGMGTGKICIQAFLQYPNLT 266          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10588.532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Topoisomerase9.510e-6398.066 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
DOT11.090e-6297.09domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical2.950e-3865.69protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.380e-3764.71protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical4.610e-3765.69protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical7.760e-3764.71protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical1.400e-3459.80protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Hypothetical5.310e-3461.76protein (Fragment) n=1 Tax=Chromulina nebulosa Tax... [more]
C2H2-type7.950e-3357.28domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical1.110e-3259.22protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10588contigEcto-sp9_F_contig10588:3257..4330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue5e-53
Seed eggNOG ortholog2880.D7FY73
EggNOG OGs2C39T@1,2STY5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.8775434-CDS-Ecto-sp9_F_contig10588:3256..34091622928274.8775434-CDS-Ecto-sp9_F_contig10588:3256..3409Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10588 3257..3409 +
1692277817.168807-CDS-Ecto-sp9_F_contig10588:3256..34091692277817.168807-CDS-Ecto-sp9_F_contig10588:3256..3409Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10588 3257..3409 +
1622928274.8952653-CDS-Ecto-sp9_F_contig10588:4174..43301622928274.8952653-CDS-Ecto-sp9_F_contig10588:4174..4330Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10588 4175..4330 +
1692277817.1790178-CDS-Ecto-sp9_F_contig10588:4174..43301692277817.1790178-CDS-Ecto-sp9_F_contig10588:4174..4330Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10588 4175..4330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10588.532.1prot_Ecto-sp9_F_contig10588.532.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10588 3257..4330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10588.532.1

>prot_Ecto-sp9_F_contig10588.532.1 ID=prot_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
WHYQEDISPEFCMALSLLHRAYGCRVQETGHKMVGHTCVTDRDKVAAREV
KGSLLYGELLPRGVNKAMGPRHLNAAKASTIYDLGMGTGKVAMQVFLQFP
NLT
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mRNA from alignment at Ecto-sp9_F_contig10588:3257..4330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10588.532.1 ID=mRNA_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10588:3257..4330+ (Ectocarpus species9 EcSCA_722f female)
TGGCACTACCAGGAGGACATTTCGCCGGAGTTCTGCATGGCGTTGTCGCT GCTGCACCGGGCCTACGGCTGCCGCGTCCAGGAGACGGGCCACAAGATGG TGGGGCACACGTGTGTCACCGACAGGGATAAGGTTGCGGCTAGAGAGGTC AAGGTAGGTCACGATAGCGAGGTTTGGTTTTGCGGGGAAGCGTGTCCTTG CGCGAGGTTTGGTTTCACAGGAAGCGTGGTTGTCCACACGCGGCGGTGGG GGTTGTTTGTGGTCACAAGCGGTTTGTCGTTACAGGCAGCGGGGGGTCAA AAGCTAGATGGAGGCAGTTGGGTCACGGGCGAGGTTTGGATGCAGGCAGC GTGGTCAAAAGCTAGCTAGGTAGGGGTTTGTTTGCCGGCAGCGTGGTCGA AAGAACCGGGTGCGTTTTGTTTTCAGGCAGCCGTGGTCACAAGCTACATA GTGGGCATTTCGTTGGAGGTACATAGCGAGGTTGGTTGCTGCAGGAGTGG TTGAAGGCCACGACAGGCGATGCATGCGCCTGCCTGACACCGGCGGCGTA CAGTACTGCACAGCTGCGACCAGGGGCGCCGTGATTGCCTGATTGCCCCC CCCCCAAAAAAGCCTACAAGGAGCGCCTTCCCGAGAAACTAAGTTAGTGA GGAAATAGAGCTGGGAGGGGGTACGCGGACCCTAGCCCTAACCCTAGCCC AACTTCCACGTCTCGCCCGCCCTCGTTGTTCTTACCGCTCGAATTGTGTT TTTTTTGTTTTTTTCTTGCAATGACAAAAAAAAGTGTTCTTCATGTCTTC CACAGATAAGAGTCCGGGATATAGAATAGAATAGAATAGTTTTGCGATAT GATGACACACTTGTGTCTTCGGCTTTTTTTTGTCTCACCGCGATGATGCG ATGGTCGACACTCTACAGGGATCTCTGCTGTACGGCGAGCTTCTCCCAAG GGGTGTTAACAAGGCCATGGGTCCGAGACACCTCAACGCCGCGAAGGCTA GCACCATCTACGACCTGGGCATGGGCACCGGCAAGGTGGCGATGCAGGTG TTCTTGCAGTTCCCGAACTTGACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10588:3257..4330+

>mRNA_Ecto-sp9_F_contig10588.532.1 ID=mRNA_Ecto-sp9_F_contig10588.532.1|Name=mRNA_Ecto-sp9_F_contig10588.532.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10588:3257..4330+ (Ectocarpus species9 EcSCA_722f female)
TGGCACTACCAGGAGGACATTTCGCCGGAGTTCTGCATGGCGTTGTCGCT
GCTGCACCGGGCCTACGGCTGCCGCGTCCAGGAGACGGGCCACAAGATGG
TGGGGCACACGTGTGTCACCGACAGGGATAAGGTTGCGGCTAGAGAGGTC
AAGTGGCACTACCAGGAGGACATTTCGCCGGAGTTCTGCATGGCGTTGTC
GCTGCTGCACCGGGCCTACGGCTGCCGCGTCCAGGAGACGGGCCACAAGA
TGGTGGGGCACACGTGTGTCACCGACAGGGATAAGGTTGCGGCTAGAGAG
GTCAAGGGATCTCTGCTGTACGGCGAGCTTCTCCCAAGGGGTGTTAACAA
GGCCATGGGTCCGAGACACCTCAACGCCGCGAAGGCTAGCACCATCTACG
ACCTGGGCATGGGCACCGGCAAGGTGGCGATGCAGGTGTTCTTGCAGTTC
CCGAACTTGACAGGATCTCTGCTGTACGGCGAGCTTCTCCCAAGGGGTGT
TAACAAGGCCATGGGTCCGAGACACCTCAACGCCGCGAAGGCTAGCACCA
TCTACGACCTGGGCATGGGCACCGGCAAGGTGGCGATGCAGGTGTTCTTG
CAGTTCCCGAACTTGACA
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