mRNA_Ecto-sp9_F_contig10582.530.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10582.530.1
Unique NamemRNA_Ecto-sp9_F_contig10582.530.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10582.530.1 vs.
Match: DHHC (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM8_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.170e-62
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 GYAALFFSVSTASMAKEISSEGGVVEVLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGNLMEFWGVGG 330
            GYAALF SVSTASMAKEISSEGGV +VLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGNLMEFWGVGG
Sbjct:  771 GYAALFLSVSTASMAKEISSEGGVFKVLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGNLMEFWGVGG 880
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BLAST of mRNA_Ecto-sp9_F_contig10582.530.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2X0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 9.440e-62
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 GYAALFFSVSTASMAKEISSEGGVVEVLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGNLMEFWGVGG 330
            GYAALF SVS ASMAKEISSEGGVV+VLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGN MEFWG+GG
Sbjct: 1047 GYAALFLSVSIASMAKEISSEGGVVKVLGTLLGKTYLPTFLLTLASAFGVVMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWGNFMEFWGIGG 1156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10582.530.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DHHC1.170e-6297.27domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Reverse9.440e-6295.45transcriptase domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10582contigEcto-sp9_F_contig10582:2190..3503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue1.8e-54
Seed eggNOG ortholog2880.D8LIM8
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG0666@1,COG5273@1,KOG0504@2759,KOG0509@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Exons3
Model size355
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10582.530.1prot_Ecto-sp9_F_contig10582.530.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10582 2190..3503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.735024-CDS-Ecto-sp9_F_contig10582:2189..22521622928274.735024-CDS-Ecto-sp9_F_contig10582:2189..2252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 2190..2252 +
1692277817.1037643-CDS-Ecto-sp9_F_contig10582:2189..22521692277817.1037643-CDS-Ecto-sp9_F_contig10582:2189..2252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 2190..2252 +
1622928274.7481682-CDS-Ecto-sp9_F_contig10582:2763..28801622928274.7481682-CDS-Ecto-sp9_F_contig10582:2763..2880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 2764..2880 +
1692277817.1149616-CDS-Ecto-sp9_F_contig10582:2763..28801692277817.1149616-CDS-Ecto-sp9_F_contig10582:2763..2880Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 2764..2880 +
1622928274.7629418-CDS-Ecto-sp9_F_contig10582:3329..35031622928274.7629418-CDS-Ecto-sp9_F_contig10582:3329..3503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 3330..3503 +
1692277817.124204-CDS-Ecto-sp9_F_contig10582:3329..35031692277817.124204-CDS-Ecto-sp9_F_contig10582:3329..3503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10582 3330..3503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10582.530.1

>prot_Ecto-sp9_F_contig10582.530.1 ID=prot_Ecto-sp9_F_contig10582.530.1|Name=mRNA_Ecto-sp9_F_contig10582.530.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
GYAALFFSVSTASMAKEISSEGGVVEVLGTLLGKTYLPTFLLTLASAFGV
VMLTGIAHEQIRNMLSNFTSNERINQRRYPWLNATPRGPPFNRYDLGPWG
NLMEFWGVGGGNGGGKDS
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mRNA from alignment at Ecto-sp9_F_contig10582:2190..3503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10582.530.1 ID=mRNA_Ecto-sp9_F_contig10582.530.1|Name=mRNA_Ecto-sp9_F_contig10582.530.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1314bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10582:2190..3503+ (Ectocarpus species9 EcSCA_722f female)
GGGTACGCGGCGCTCTTCTTCTCGGTCTCGACGGCCTCCATGGCCAAGGA
AATTTCTTCCGAGGTGAAGGGGCCGCGTCGACAAAAGCCGAACCATTTAT
GTTTTTTTTTTTTATCATGACTTTGAATCAGCGCTCACGGAATTATTGCC
GGGCCGGAAAGGAAGATGCTCCAATCTGTGGTCACACAGAAGTTGGCCCT
ATCTAGGTTTTCGCGGCAAACGAAACAATTTCTCCCTTGTATAACGGGAG
TCGAAACACCTGAAGATACTGTATTTTTTTTGGTACAGCAGTAAAACGGC
CAAGTGATGTAGTTTGATTCCCCCCCCGTCTTTTCCCCCGCTTGACGGGT
TATTTGCCCCTCATCAGCTTATGATGGAAGCGTGAGTCGGAGGGGGGACG
GGGAGACAAAGAGCACTTCGAAGTATGTGATAGAGGGCATCTCGCGCGGT
AGCTTGATTCGATGGATCTACGAAGGCACTCCTTTGAGAGAATTGACCGA
AACAGTCACTCCTCTCCTTTTTTTTTTTTGCTTTCGGCGATGTTTTGTTC
TCTTCGGCAAACCAAACCCCCCAGGGAGGCGTCGTCGAGGTGCTGGGGAC
TCTGCTGGGTAAGACTTATCTCCCGACCTTCCTTCTGACGCTCGCGTCGG
CATTCGGAGTCGTCATGCTTACTGGGATCGCTCACGAGCAGGTGCGCGCT
TGCTTGGGTCAAAAGGAGGGGGGGGGGAGGGCTCCGCGGTTGGTTAGTGG
CGCGTGCGGAGTTCTTGGCTGCTCAGGGCGAGCGACTTCGAATGAAGTTT
GTCCACGAAAGTGGACACAGCAGTAGCTTCAGACATTGCAACAAAAGTTT
ATTTCAAGTCGCTCGAATGTGGTGTGGATGTAAATGGTGACACCGAAGAT
ATTCGGTCGAACAAGCAACAACGAAAACACCTCATCATGCATGCAATCAA
CGTACACTCCCAAGACACACCACCAACAATCTGTAGGGGTTTGGCGCGAG
CAAAGCCTTTTGGAGCGAACAATACTCCGTCCCCGCACCGCTTCGTCCGA
AACCCCTCTAACGGAACCCCCCCACGCCCTGTCGATGCCCTTACTGTCGG
CGACGCCCGTGCCGTGCCGCACCATGGGTGTGACGCCCAGATCCGGAACA
TGCTGTCGAACTTCACCTCGAACGAACGGATAAACCAGCGGCGTTACCCT
TGGCTCAACGCTACCCCACGAGGGCCCCCGTTCAACCGCTACGACCTCGG
CCCGTGGGGCAACCTCATGGAGTTCTGGGGAGTCGGCGGGGGCAACGGCG
GTGGCAAAGACAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10582:2190..3503+

>mRNA_Ecto-sp9_F_contig10582.530.1 ID=mRNA_Ecto-sp9_F_contig10582.530.1|Name=mRNA_Ecto-sp9_F_contig10582.530.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10582:2190..3503+ (Ectocarpus species9 EcSCA_722f female)
GGGTACGCGGCGCTCTTCTTCTCGGTCTCGACGGCCTCCATGGCCAAGGA
AATTTCTTCCGAGGGGTACGCGGCGCTCTTCTTCTCGGTCTCGACGGCCT
CCATGGCCAAGGAAATTTCTTCCGAGGGAGGCGTCGTCGAGGTGCTGGGG
ACTCTGCTGGGTAAGACTTATCTCCCGACCTTCCTTCTGACGCTCGCGTC
GGCATTCGGAGTCGTCATGCTTACTGGGATCGCTCACGAGCAGGGAGGCG
TCGTCGAGGTGCTGGGGACTCTGCTGGGTAAGACTTATCTCCCGACCTTC
CTTCTGACGCTCGCGTCGGCATTCGGAGTCGTCATGCTTACTGGGATCGC
TCACGAGCAGATCCGGAACATGCTGTCGAACTTCACCTCGAACGAACGGA
TAAACCAGCGGCGTTACCCTTGGCTCAACGCTACCCCACGAGGGCCCCCG
TTCAACCGCTACGACCTCGGCCCGTGGGGCAACCTCATGGAGTTCTGGGG
AGTCGGCGGGGGCAACGGCGGTGGCAAAGACAGCATCCGGAACATGCTGT
CGAACTTCACCTCGAACGAACGGATAAACCAGCGGCGTTACCCTTGGCTC
AACGCTACCCCACGAGGGCCCCCGTTCAACCGCTACGACCTCGGCCCGTG
GGGCAACCTCATGGAGTTCTGGGGAGTCGGCGGGGGCAACGGCGGTGGCA
AAGACAGC
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