mRNA_Ecto-sp9_F_contig10580.529.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.960e-66 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 3
Query: 3 MTNPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM 347
MTNPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM
Sbjct: 1829 MTNPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM 1943
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE) HSP 1 Score: 235 bits (599), Expect = 9.220e-66 Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 3
Query: 3 MTNPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM 347
MT+PGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM
Sbjct: 1981 MTSPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPKTVEEVEALMLHRDAAKCRIM 2095
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ59_9STRA) HSP 1 Score: 119 bits (298), Expect = 9.800e-28 Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 3
Query: 15 GVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPK--TVEEVEALMLHRDA-AKCRIM 347
GVIG + GRG Y+LY VVHHLGA+S+GHYV+SVK Q TGKWHYFND+ E E +L + SAYILFY+R+D AG+ I+D YP+ T EE+E LM RD +C++M
Sbjct: 176 GVIGTEDGRGEGHYELYGVVHHLGAMSAGHYVSSVKVQSTGKWHYFNDNVQLESSEQDL--VNESAYILFYVRKDMAGVSIDDAYPTTDQVGLTEEELERLMKKRDTPGRCQVM 287
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDL9_HETAK) HSP 1 Score: 115 bits (289), Expect = 3.160e-26 Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 3
Query: 15 GVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPK---TVEEVEALMLHRDAAKCRIM 347
GV+ A G LY+LY+VVHH+GAL SGHYVASV+S TGKWH FND+QVTE+ ++ + SAY+LFY+R+ L I DVYP+ T+EE+E LM RD++ C M
Sbjct: 199 GVLSAGTGADDGLYELYAVVHHVGALQSGHYVASVRSLATGKWHNFNDNQVTEMADETALGGAPSAYLLFYVRKGLGALDIADVYPAQAQSGSMTLEEIEELMSKRDSSGCTTM 312
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ88_9STRA) HSP 1 Score: 119 bits (298), Expect = 7.390e-26 Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 3
Query: 15 GVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPK--TVEEVEALMLHRDA-AKCRIM 347
GVIG + GRG Y+LY VVHHLGA+S+GHYV+SVK Q TGKWHYFND+ E E +L + SAYILFY+R+D AG+ I+D YP+ T EE+E LM RD +C++M
Sbjct: 1457 GVIGTEDGRGEGHYELYGVVHHLGAMSAGHYVSSVKVQSTGKWHYFNDNVQLESSEQDL--VNESAYILFYVRKDMAGVSIDDAYPTTDQVGLTEEELERLMKKRDTPGRCQVM 1568
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSF3_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.260e-23 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query: 15 GVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPK---------TVEEVEALMLHRDAAKC 338
G + + GR + Y+LY+VVHHLGA+S+GHYV+S+K + TGKWH FND+ E E +L + SAYILFYMR+D A + I++VYP G P T +EV+ + RD A+C
Sbjct: 241 GALSFEDGRSANDYELYAVVHHLGAMSAGHYVSSIKCRSTGKWHCFNDNVQFETSEKDL--VNDSAYILFYMRKDMAAVNIDEVYPKGEPSVGGAKGGGMTEDEVDKFIKKRDTARC 355
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BU41_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.070e-22 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query: 15 GVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPSGPPK---------TVEEVEALMLHRDAAKC 338
G + + GR + Y+LY+VVHHLGA+S+GHYV+S+K + TGKWH FND+ E E +L + SAYILFYMR+D A + I++VYP G P T +EV+ + RD A+C
Sbjct: 640 GALSFEDGRSANDYELYAVVHHLGAMSAGHYVSSIKCRSTGKWHCFNDNVQFETSEKDL--VNDSAYILFYMRKDMAAVNIDEVYPKGEPSVGGAKGGGMTEDEVDKFIKKRDTARC 754
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.410e-22 Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3
Query: 27 ADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVY----------PSGPPKTVEEVEALMLHRDAAKCRIM 347
A G GSLYDLY+VVHHLGALS+GHYVASVKSQ G+WHYFND QV+E+ E+EL S +AYILFY RR+ L++ ++ P P + + ++A RD +C +M
Sbjct: 1884 AQGSDDGSLYDLYAVVHHLGALSAGHYVASVKSQSDGRWHYFNDHQVSEMPENEL--VSQTAYILFYARRNIGSLKLAEMLGQHLGRKHDAPRSPLRDAD-IDAFAAQRDGGRCALM 1997
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9T2_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 8.200e-22 Identity = 57/107 (53.27%), Postives = 68/107 (63.55%), Query Frame = 3
Query: 36 GRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYP----SGPPKTVEEVEALMLHRDAAKCRI 344
GR SLYDLY VVHH GALS GHYVAS+KS+ GKW FND QV EV+ ++ SSAYILFY+RRD +ED + G T EEV+ LM R+ +C I
Sbjct: 36 GRSESLYDLYGVVHHQGALSGGHYVASLKSEVDGKWRMFNDAQVYEVNSRDI--VDSSAYILFYVRRDVRNAHLEDFWDINTREGEGLTEEEVQRLMSERE--RCSI 138
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W329_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.500e-19 Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 3
Query: 33 GGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFNDDQVTEVDEDELGSSSSSAYILFYMRRDCAGLRIEDVYPS----GPPKTVEEVEALMLHRDA 329
GGR SLYDLY VVHH GALS GHYVAS+KS+ GKW FND Q+ E+ ++++ +SAYILFY+R+D G ++ + + G T EEVE +M R A
Sbjct: 265 GGRNESLYDLYGVVHHQGALSGGHYVASLKSEIDGKWRLFNDAQIYEISDNDV--VDASAYILFYIRKDAKGATLDKFWDTRIREGEGMTEEEVEKMMKQRGA 365 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10580.529.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10580.529.1 >prot_Ecto-sp9_F_contig10580.529.1 ID=prot_Ecto-sp9_F_contig10580.529.1|Name=mRNA_Ecto-sp9_F_contig10580.529.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=116bp MTNPGVIGADGGRGGSLYDLYSVVHHLGALSSGHYVASVKSQPTGKWHYFback to top mRNA from alignment at Ecto-sp9_F_contig10580:1481..3846- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10580.529.1 ID=mRNA_Ecto-sp9_F_contig10580.529.1|Name=mRNA_Ecto-sp9_F_contig10580.529.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10580:1481..3846- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10580:1481..3846- >mRNA_Ecto-sp9_F_contig10580.529.1 ID=mRNA_Ecto-sp9_F_contig10580.529.1|Name=mRNA_Ecto-sp9_F_contig10580.529.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10580:1481..3846- (Ectocarpus species9 EcSCA_722f female)back to top |