mRNA_Ecto-sp9_F_contig1058.528.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI) HSP 1 Score: 523 bits (1348), Expect = 1.180e-179 Identity = 270/435 (62.07%), Postives = 325/435 (74.71%), Query Frame = 3
Query: 282 TPDYSLHRAFRRARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGIFQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFYIQRSHARFLKVYGTVSNNSPSDIEHQRFQEGLGCLAYPRSYAVQLGSYETGPPPVQIVSVTGWSFSKAAGKSGLIGFGKSSSNPAVATFLLRCSGERRVLDVGYLVSYEGMGAARVVVDARPEAGEASATGNSSTSAVIVDGLWGSHASVSLFETIPLPETGSTTSEGMVKVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 1571
T D SLHRAFRRAR RG+LKVVVLGGSVT+GH+CSSPAGL CAWPHRVEQWFQ++ LDIEV N +VP G+ QFLH +D+ LP DLEVDLIIVDFGVNDAV+E+ + LEY++MAH+ LIRYV D M HSPALLY ESFI+P R+ + PWQ NMAEV ASVTQK+ IPM SFR AVWP + + A IWG VHPDW+V QLMAD+V +Y+Q S+ARFL+VYG + N SPS+ E QRF+ G+GCLA PRS ++LGSY PPP ++VSVTGWS K +G++GL GF K +++PAVATF L C G +LD+ YLVSY GMGA V ++A P A + G SSTS VIVDGLW SHASVS FETIP+P+ G G V+V+ +ILSA+EE S +SSR G + +RGDRKFKLISLQCC
Sbjct: 75 TSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPVDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPKKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE) HSP 1 Score: 494 bits (1272), Expect = 8.740e-168 Identity = 261/435 (60.00%), Postives = 316/435 (72.64%), Query Frame = 3
Query: 282 TPDYSLHRAFRRARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGIFQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFYIQRSHARFLKVYGTVSNNSPSDIEHQRFQEGLGCLAYPRSYAVQLGSYETGPPPVQIVSVTGWSFSKAAGKSGLIGFGKSSSNPAVATFLLRCSGERRVLDVGYLVSYEGMGAARVVVDARPEAGEASATGNSSTSAVIVDGLWGSHASVSLFETIPLPETGSTTSEGMVKVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 1571
T D +LHRAFRRAR RG+LKVVVLGGSVTFGHECSSPAGL ACAWPHRVEQWFQ+++ LDIEV N ++P G+ QFL +D+ LP DLEVDLIIVDFGVNDAV+E + LE++KMAH+ LIRY+ M HSPALLY ESFI+P R Q PWQ NMAE ASVT+K+ IPM SFR AVWP + + A IWG VHPDW+V QLMAD+V +Y+Q S+ARFL+VYG SN SPS+ E QRF+ G+GCLA PRS +QL Y PPP ++VSV+G S +G +G GF K +++PAVATF L C G +LD+ YLVSYEGMG+A V ++A P A + GNSSTS VIVDGLW SHASV FETIP+P+ G V+V+ +I+SA+ E S +SSR G + +RGDRKFKLISLQCC
Sbjct: 103 TSDLTLHRAFRRARGRGVLKVVVLGGSVTFGHECSSPAGLEGIACAWPHRVEQWFQEENEDLDIEVTNASIPGFGVMQFLLKRLDKTLPVDLEVDLIIVDFGVNDAVIELFEYNLEHLKMAHELLIRYIRYTMFHSPALLYAESFIAPSRTLQVPWQSENMAEAHASVTRKHDIPMVSFRDAVWPQKEDYAAAEVIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSPSERELQRFKSGMGCLANPRSAILQLDKYLDAPPPEELVSVSG---SSVSGDAGPTGFRKDATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRH---VRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE) HSP 1 Score: 404 bits (1037), Expect = 7.680e-135 Identity = 213/358 (59.50%), Postives = 262/358 (73.18%), Query Frame = 3
Query: 513 QFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFYIQRSHARFLKVYGTVSNNSPSDIEHQRFQEGLGCLAYPRSYAVQLGSYETGPPPVQIVSVTGWSFSKAAGKSGLIGFGKSSSNPAVATFLLRCSGERRVLDVGYLVSYEGMGAARVVVDARPEAGEASATGNSSTSAVIVDGLWGSHASVSLFETIPLPETGSTTSEGMVKVTFKILSAQEEISYASSRRLYKSG-----RHLRGDRKFKLISLQCC 1571
QFLH +D+ LP DLEVDLIIVDFGVNDAV+E+ + LEY++MAH+ LIRYV D M HSPALLY ESFI+P R+ + PWQ NMAEV ASVTQK+ IPM SFR AVWP + + A IWG VHPDW+V QLMAD+V +Y+Q S+ARFL+VYG N SPS+ E QRF+ G+GCLA PRS ++LG+Y P P ++VSVTGWS K +G++GL GF K +++PAVATF L C G +LD+ YLVSY GMG+ V ++A P A + G SSTS VIVDGLW SHASVS FETIP+P+ G G V+V+F+ILSA+EE S +SSR G + +RGDRKFKLISLQCC
Sbjct: 2 QFLHKLLDKALPVDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLEAPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSPSERELQRFKGGMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGG---GNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI) HSP 1 Score: 377 bits (968), Expect = 8.290e-124 Identity = 211/433 (48.73%), Postives = 273/433 (63.05%), Query Frame = 3
Query: 324 ERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGIFQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATRIWGRKVHPDWRVQQLMADLVVFYIQRSHARFLKVYGTVS-----------NNSPSDIEHQRFQEGLGCLAYPRSYAVQLGSYETGPPPVQIVSVTGWSFSKAAGKSGLIGFGKSSSNPAVATFLLRCSGERRVLDVGYLVSYEGMGAARVVVDARPEAGEASATGNSSTSAVIVDGLWGSHASVSLFETIPLPETGSTTSEGMVKVTFKILSAQEEISYASSRRLY------KSGRHLRGDRKFKLISLQCC 1571
+ G+LKVV +GGSVTFG C SP GL ACAWPHR+EQWFQ++ ++EV NEAVP G+ FLH + LP DL+VDL+IVDFGVNDA+++ +F L+ VKMAH+T I ++ + M+ PALLY ES+ISP H G NMAEV A+VTQK+ IPM VQQLMAD+VV+Y+Q+SHARFL+ G ++ N S + E +RF+ GLGCL ++ ++LG Y PPP ++VS GWS + AG GL GFG SSSNPAVA F L C GE+++LDV YLVSYEGMGA +V V G ++A N+STS V+VDGLWGSH S+ FETI +P+ G++ E MV+VT +ILS + E Y L+ + +RGDRKFKL+SLQCC
Sbjct: 2 DNGVLKVVAIGGSVTFGRNCESPNGLTFNACAWPHRLEQWFQEKVGDFEVEVVNEAVPGEGMIDFLHKTIKSALPVDLKVDLVIVDFGVNDAILD--HFDLDDVKMAHETFIGHIRNAMTSKPALLYAESYISPHLVAIHWAPGRNMAEVHANVTQKHDIPM------------------------------VQQLMADVVVYYMQKSHARFLEANGEIACGDEVVKDPLPNPSVDERELERFKNGLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGFGNSSSNPAVAVFDLPCVGEKQILDVEYLVSYEGMGAVKVSVGQVDAHGSSAA--NNSTSVVVVDGLWGSHVSIPAFETIDIPDKGTSAPESMVRVTLEILSVEGERLYTPH--LFAGVGNDEKQTSVRGDRKFKLLSLQCC 398
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS8_ECTSI) HSP 1 Score: 207 bits (526), Expect = 1.480e-58 Identity = 102/176 (57.95%), Postives = 125/176 (71.02%), Query Frame = 3
Query: 282 TPDYSLHRAFRRARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGIFQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPM 809
T LHRAF A+ G+LKVV +GGSVTFG C SP GL ACAWPHR++QWF+ + +EV NEAVP G+ FLH + VL D+EVDL+IVDFGVNDA+++ +F LE VKMAH+T I +V + M+ PALLY ESFI+P A+ HP QG NMAEV A+VTQKY IPM
Sbjct: 162 TSGIHLHRAFNTAKANGVLKVVAIGGSVTFGRSCESPKGLANNACAWPHRLDQWFRAEVGDFKVEVVNEAVPGEGMIDFLHKTIKNVLSVDVEVDLVIVDFGVNDAILD--HFDLEDVKMAHETFISHVRNAMTSKPALLYAESFIAPRLASLHPPQGSNMAEVHANVTQKYDIPM 335
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM8_9PHAE) HSP 1 Score: 108 bits (271), Expect = 9.070e-24 Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query: 282 TPDYSLHRAFRRARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEV 479
T D SLHRAFRRAR RG+LKVVVLGGSVT+GH+CSSP GL CAWPHRVEQWFQ++ LDIEV
Sbjct: 130 TSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPTGLKGNDCAWPHRVEQWFQEEYEDLDIEV 195
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=2 Tax=Rhizobium oryzae TaxID=464029 RepID=A0A1Q9AU88_9HYPH) HSP 1 Score: 68.6 bits (166), Expect = 9.050e-9 Identity = 73/258 (28.29%), Postives = 117/258 (45.35%), Query Frame = 3
Query: 273 AVETPDYSLHRAFRRARERGMLKVV-VLGGSVTFGHECSSPA--GLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASG-IFQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRA-TQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLA-TRIWGRKVHPDWRVQQLMADLVVFYIQ---RSHARFLKVYGTVSNNSPSDIEHQRF 1019
AV D + R ERG V+ V+GGS++ G S P G C W+Q+Q I+ N AV +G +F L + D + + D +IV+F VNDA +Q F ++L+R +L + SP L F+S + WQ +V + YG+PM SFR A+WP++ + + + + VHP+ + Q+ ADLV ++ + A +V G + +P+ E R+
Sbjct: 35 AVSAGDPARFRKLFEKAERGEEIVLGVIGGSISTGSLASKPGERGYFALVC-------DWWQKQFPQARIKRVNAAVAGTGSLFGVLRVEQDLLAQ---KPDAVIVEFAVNDAWTDQDPF---------ESLVRRLL---AASPDLAVMLLFMSYDNGHNEQTWQ--------QAVGKHYGLPMVSFRDAIWPEVSRGLIKPSDVLVDIVHPNDQGHQITADLVTASLEALRHAPAGAAQVGGQPAPLAPTHFEKARW 262
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Lentisphaerae bacterium RIFOXYA12_FULL_48_11 TaxID=1798578 RepID=A0A1G1AC70_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 4.040e-7 Identity = 51/195 (26.15%), Postives = 88/195 (45.13%), Query Frame = 3
Query: 315 RARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGI-FQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATR-IWGRKVHPD 893
RA+ + + V+GGS+T G + P + + V W++ +I N + A+G F L D + + D ++V++GVND + LE L+R +L +++ PA+ ++ GGN E V + YGIP+ S+R A+WP+IK+ L + +VHP+
Sbjct: 47 RAQRGEKITIAVIGGSITAGAKAGKPE------LRYGNLVAGWWRTNYPKAEIVFVNAGIGATGSNFGALRARRDLLAH---KPDFVVVEYGVNDGDTQAFAETLE-------GLVRQILKQLNQ-PAI---------VQLFMMHKGGGNAQEWHGKVGRHYGIPLVSYRDALWPEIKEGRLTWESVMADEVHPN 215
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: SGNH_hydro (domain-containing protein n=1 Tax=Betaproteobacteria bacterium ADurb.Bin341 TaxID=1852821 RepID=A0A1V5QT65_9PROT) HSP 1 Score: 63.9 bits (154), Expect = 5.380e-7 Identity = 57/236 (24.15%), Postives = 109/236 (46.19%), Query Frame = 3
Query: 258 VREVGAVETPDYS-LHRAFRRARERGMLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGI-FQFLHLGMDEVLPADLEVDLIIVDFGVNDAVVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQASLATR-IWGRKVHPDWRVQQLMADLVVFYIQRSHAR 956
+RE G V D + + +AR L V +GGS+T G + + A + +V WF++ GL I N + A+ + L + D + + DL++V++ VND F + +++ ++R +L SP + E F H G + E + ++ + YG+PM SFR AVWP+++ ++ ++ VHP+ + ++L+ ++ + A+
Sbjct: 1 MRERGLVSAGDPARIQAVLAKARRGEPLCVAAIGGSITAGGRATK-----DPARRYVQQVAAWFEKSFPGLKIRFVNAGIGATNSGYGALRVQRDVIAH---QPDLVVVEYAVND-------FGGGVMDESYEGVLRQLLRS---SPNCAFIELFF------MHK-DGKSAQEGQVALGRHYGLPMLSFRDAVWPELQAGAITWETLYDDVVHPNDAGHDIASELLCGFLASALAK 211
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BT62_9TREE) HSP 1 Score: 59.3 bits (142), Expect = 1.290e-5 Identity = 65/255 (25.49%), Postives = 111/255 (43.53%), Query Frame = 3
Query: 297 LHRAFRRARERGMLKVVVLGGSVTFGH----ECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKNEAVPASGIFQFLHLGMDEVLPADLEVDLIIVDFGVNDA--VVEQVNFKLEYVKMAHDTLIRYVLDEMSHSPALLYTESFISPIRATQHPWQGGNMAEVRASVTQKYGIPMASFRHAVWPDIKQ--ASLATRIWGRKV-HPDWRVQQLMADLVVFYIQRSHARFLKVYG---------TVSNNSP-SDI 1004
+ R ++ARE G++K+ VLGGSV+ H P G + + ++ WF G E+ N A+ + G + + DLII++F VND ++ Q F D L+R L E PA+L ++ + Q G+ V A ++ Y +P S + ++ + S A + + HP+ R +++ADL++ Y++ S L YG T+S+ P SD+
Sbjct: 167 MRRMLQKAREGGVMKIGVLGGSVSACHGVHPSTDYPQGDPKGPGCYTTLLKDWFDNTFPGAGHELMNGAIGGMDSSYYAFCGTHHIAT---DTDLIILEFDVNDQTDIIYQAFF---------DQLLR-ALSEFPSQPAILILGAWGPQVAQDQGY---GDPQIVHAPISLYYDVPYLSMKRLLFNHYLRYPESTAQAFFQPDILHPNARGHRILADLLISYLE-SELCMLTHYGLPVVPPVADTISSTDPFSDL 404 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1058.528.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1058.528.1 >prot_Ecto-sp9_F_contig1058.528.1 ID=prot_Ecto-sp9_F_contig1058.528.1|Name=mRNA_Ecto-sp9_F_contig1058.528.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=414bp MLKVVVLGGSVTFGHECSSPAGLIEKACAWPHRVEQWFQQQSTGLDIEVKback to top mRNA from alignment at Ecto-sp9_F_contig1058:17716..24100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1058.528.1 ID=mRNA_Ecto-sp9_F_contig1058.528.1|Name=mRNA_Ecto-sp9_F_contig1058.528.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6385bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1058:17716..24100- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1058:17716..24100- >mRNA_Ecto-sp9_F_contig1058.528.1 ID=mRNA_Ecto-sp9_F_contig1058.528.1|Name=mRNA_Ecto-sp9_F_contig1058.528.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2484bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1058:17716..24100- (Ectocarpus species9 EcSCA_722f female)back to top |