mRNA_Ecto-sp9_F_contig10578.526.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10578.526.1
Unique NamemRNA_Ecto-sp9_F_contig10578.526.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10578.526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 1.340e-81
Identity = 373/515 (72.43%), Postives = 381/515 (73.98%), Query Frame = -2 
Query:   30 MNVNGDDDGG-KSIPAGTADASGSTSSAAGGLDVLGQAVESATAAPPGLAP-----LSPAPAASTAGXXXXXXXXXXXXXXXXXXCLVTPQDTGVVELSNAQEIQTHNIITTMPFITPLLVGATADGGAAPAESAAPGSPSCGDNVAVADAAA-AAPSHELGNRGGGDSADDGTAAAEKAAGSPRTAGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSTPGEGGDDASLAARADSSTAAVTAVTPAAVAPLAPGAATAEGTGAPGAELSDGAGSGAGAAALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSEGAPAQSRGGLAAAAPELLLVGAGDAQQAVDTEERGQGAKQEGRKGKXXXXXXXXXXXXXXXXRLRADKRKALDMLRTEPEPGKXXSKRG 1553
            MN+NGDDDGG KS PAGTADAS S+SSAAGGLDVLGQAVESATAA PGLAP     LSPAPAASTAG XXXXXXXXXXXXXXXXXCLVTPQ T VVELS+AQEIQTHNIITTMPFITP LVG TADGGAAPAESAAPGSPSCG+NVAVAD AA AAPSHELGNRGGGDS                 AGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXX   X                                XXXXXXXXXXXXXXXXXXXXXX    PT+TP E GDDASLAARADSS AAVT           PG ATA GTGA GAELSD  GSGAGAAAL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   ELL+VGAGDAQQAVDTE +GQGAKQEGRKG    XXXXXXXXXX   RLRADKRKALDMLR EPE G+  SKRG
Sbjct:    1 MNLNGDDDGGNKSTPAGTADASASSSSAAGGLDVLGQAVESATAASPGLAPPXXXXLSPAPAASTAGPXXXXXXXXXXXXXXXXXCLVTPQGT-VVELSDAQEIQTHNIITTMPFITPPLVGTTADGGAAPAESAAPGSPSCGENVAVADVAAGAAPSHELGNRGGGDSXXXXXXXXXXXXXXXXXAGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXXEAGIRTSTXXXXXXXXXETTXITPTTSEGGGCPTPVPAVAVTTGGISLAPTTMXXXXXXXXXXXXXXXXXXXXXXGTQTPTNTPAEDGDDASLAARADSSAAAVTXXXXXXXXXXXPGVATAAGTGAAGAELSDRTGSGAGAAALDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVVGAGDAQQAVDTEGQGQGAKQEGRKG----XXXXXXXXXXRPRRLRADKRKALDMLRMEPEAGEDKSKRG 510
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BLAST of mRNA_Ecto-sp9_F_contig10578.526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.500e-20
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = -2 
Query:   18 GAPAQSRGGLAAAAPELLLVGAGDAQQAVDTEERGQGAKQEGRKGKXXXXXXXXXXXXXXXXRLRADKRKALDMLRTEPEPGKXXSKRGRISQ 296
            GAPAQSR GLAAAA ELLLVGAGDAQQAV TEERGQGAKQEGRK  XXXXXXXXXXXXX   RLRADKRKALDMLRTE EPG+  SKRGR+SQ
Sbjct:   61 GAPAQSRSGLAAAAAELLLVGAGDAQQAVGTEERGQGAKQEGRK--XXXXXXXXXXXXXRPRRLRADKRKALDMLRTESEPGEDKSKRGRMSQ 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10578.526.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.340e-8172.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.500e-2086.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10578contigEcto-sp9_F_contig10578:1935..3602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1668
Cds size1527
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10578.526.1prot_Ecto-sp9_F_contig10578.526.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10578 2010..3536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.2836072-UTR-Ecto-sp9_F_contig10578:1934..20091622928274.2836072-UTR-Ecto-sp9_F_contig10578:1934..2009Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10578 1935..2009 +
1692277816.8218975-UTR-Ecto-sp9_F_contig10578:1934..20091692277816.8218975-UTR-Ecto-sp9_F_contig10578:1934..2009Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10578 1935..2009 +
1622928274.3085716-UTR-Ecto-sp9_F_contig10578:3536..36021622928274.3085716-UTR-Ecto-sp9_F_contig10578:3536..3602Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10578 3537..3602 +
1692277816.8434732-UTR-Ecto-sp9_F_contig10578:3536..36021692277816.8434732-UTR-Ecto-sp9_F_contig10578:3536..3602Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10578 3537..3602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.2952125-CDS-Ecto-sp9_F_contig10578:2009..35361622928274.2952125-CDS-Ecto-sp9_F_contig10578:2009..3536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10578 2010..3536 +
1692277816.831716-CDS-Ecto-sp9_F_contig10578:2009..35361692277816.831716-CDS-Ecto-sp9_F_contig10578:2009..3536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10578 2010..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10578.526.1

>prot_Ecto-sp9_F_contig10578.526.1 ID=prot_Ecto-sp9_F_contig10578.526.1|Name=mRNA_Ecto-sp9_F_contig10578.526.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=509bp
MSSAFLLSARSRRGRCTLCCCCCCCCRCFPFLPSCFAPCPRSSVSTACCA
SPAPTSSSSGAAAASPPRLCAGAPSDGPADEEDNGGGRAPLSPLLLSPEE
GLAAASAATPGAAATTLAFEEEDEDAALLTRAAAPAPLPAPSLSSAPGAP
VPSAVAAPGASGATAAGVTAVTAAVLESARAARLASSPPSPGVLVGAVVP
PPAPLAAGVISVVATGGGTAGVVVVGARLIPPVVTAAAGTGVGQPPPSLV
VGVTVVVSAGGAAGVAAVEVLIPASAGGGAAAAGAAGTAAVEPAAALVVV
TSVFATAVADSKPAVRGDPAAFSAAAVPSSAESPPPLLPSSCDGAAAAAS
ATATLSPQDGLPGAALSAGAAPPSAVAPTRSGVMNGMVVMMLWVWISWAF
ESSTTPVSCGVTKQAEDAAGTAVVVAAAGAAGPAVDAAGAGDRGASPGGA
AVADSTACPSTSRPPAALLVLPLASAVPAGIDLPPSSSPFTFIIHTLFPV
DQDILLVG*
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mRNA from alignment at Ecto-sp9_F_contig10578:1935..3602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10578.526.1 ID=mRNA_Ecto-sp9_F_contig10578.526.1|Name=mRNA_Ecto-sp9_F_contig10578.526.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1668bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10578:1935..3602+ (Ectocarpus species9 EcSCA_722f female)
CCCTCTTCTTCCTCCTCCTGGCTTATTCTCCCGCGCTTGCTCTTGCCCTT
GCCAGGCTCCGGTTCCGTGCGCAGCATGTCCAGCGCCTTTCTCTTGTCGG
CCCGAAGCCGCCGCGGGCGTTGCACCCTCTGCTGCTGCTGCTGCTGTTGC
TGCCGCTGCTTTCCTTTCCTCCCCTCCTGCTTCGCACCTTGCCCCCGCTC
CTCCGTGTCCACCGCCTGCTGCGCATCACCAGCGCCCACCAGCAGCAGCT
CCGGCGCTGCCGCCGCAAGCCCGCCTCGGCTCTGCGCCGGCGCACCTTCG
GATGGGCCGGCGGATGAGGAAGACAACGGTGGTGGCAGGGCACCACTGTC
ACCACTGCTGCTTTCGCCGGAGGAGGGCCTGGCGGCGGCTTCCGCGGCGA
CACCTGGTGCCGCCGCCACTACCTTAGCATTCGAGGAGGAGGACGAGGAC
GCGGCACTACTGACAAGAGCGGCAGCACCAGCACCGCTACCGGCCCCATC
ACTCAGCTCGGCGCCGGGCGCACCTGTCCCCTCCGCCGTGGCCGCTCCAG
GTGCCAGTGGTGCCACTGCTGCCGGTGTAACGGCGGTAACAGCGGCGGTG
CTAGAGTCGGCACGAGCGGCCAGGCTGGCATCATCGCCACCTTCACCAGG
GGTGCTTGTGGGCGCCGTCGTCCCGCCGCCGGCTCCGCTCGCTGCCGGTG
TCATTAGTGTGGTCGCTACCGGAGGAGGTACGGCAGGCGTCGTCGTCGTT
GGTGCGAGACTGATTCCTCCTGTCGTCACCGCTGCCGCAGGAACGGGAGT
CGGGCAGCCGCCTCCTTCGCTAGTGGTAGGGGTAACGGTTGTCGTTTCTG
CGGGGGGCGCCGCAGGTGTGGCAGCAGTTGAGGTACTGATTCCCGCCTCC
GCCGGCGGCGGCGCAGCAGCAGCCGGTGCGGCAGGAACAGCAGCAGTGGA
ACCGGCAGCGGCGCTTGTTGTCGTCACGTCCGTGTTCGCCACCGCCGTCG
CTGATTCCAAACCGGCTGTCCGTGGTGATCCTGCTGCCTTTTCTGCAGCA
GCGGTACCGTCGTCGGCAGAGTCGCCTCCGCCCCTGTTGCCCAGTTCGTG
CGACGGAGCAGCAGCAGCAGCATCAGCGACGGCGACATTATCACCGCAAG
ACGGGCTTCCCGGCGCCGCGCTCTCTGCCGGAGCGGCGCCGCCGTCTGCA
GTAGCCCCCACAAGGAGCGGAGTGATGAACGGCATGGTGGTAATGATGTT
GTGGGTCTGGATCTCCTGGGCGTTCGAAAGCTCCACCACGCCTGTGTCTT
GCGGGGTCACCAAACAAGCCGAAGACGCCGCCGGAACGGCGGTTGTTGTT
GCCGCTGCTGGTGCCGCTGGCCCGGCGGTTGACGCCGCGGGCGCCGGCGA
TAGAGGAGCTAGTCCTGGCGGAGCTGCCGTGGCGGACTCGACCGCCTGTC
CCAGCACATCAAGACCACCGGCGGCACTGCTGGTGCTTCCACTCGCATCA
GCGGTGCCCGCCGGGATCGATTTGCCGCCATCGTCATCACCGTTCACGTT
CATAATCCATACACTTTTCCCAGTGGACCAGGATATCCTTCTCGTGGGCT
AACTCCTACTCTCACCCGTCGTCCTGCTGCTGTGTGCCTCTGCGCTGTGC
GTGTGTGCTTGCCGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10578:1935..3602+

>mRNA_Ecto-sp9_F_contig10578.526.1 ID=mRNA_Ecto-sp9_F_contig10578.526.1|Name=mRNA_Ecto-sp9_F_contig10578.526.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3054bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10578:1935..3602+ (Ectocarpus species9 EcSCA_722f female)
ATGTCCAGCGCCTTTCTCTTGTCGGCCCGAAGCCGCCGCGGGCGTTGCAC
CCTCTGCTGCTGCTGCTGCTGTTGCTGCCGCTGCTTTCCTTTCCTCCCCT
CCTGCTTCGCACCTTGCCCCCGCTCCTCCGTGTCCACCGCCTGCTGCGCA
TCACCAGCGCCCACCAGCAGCAGCTCCGGCGCTGCCGCCGCAAGCCCGCC
TCGGCTCTGCGCCGGCGCACCTTCGGATGGGCCGGCGGATGAGGAAGACA
ACGGTGGTGGCAGGGCACCACTGTCACCACTGCTGCTTTCGCCGGAGGAG
GGCCTGGCGGCGGCTTCCGCGGCGACACCTGGTGCCGCCGCCACTACCTT
AGCATTCGAGGAGGAGGACGAGGACGCGGCACTACTGACAAGAGCGGCAG
CACCAGCACCGCTACCGGCCCCATCACTCAGCTCGGCGCCGGGCGCACCT
GTCCCCTCCGCCGTGGCCGCTCCAGGTGCCAGTGGTGCCACTGCTGCCGG
TGTAACGGCGGTAACAGCGGCGGTGCTAGAGTCGGCACGAGCGGCCAGGC
TGGCATCATCGCCACCTTCACCAGGGGTGCTTGTGGGCGCCGTCGTCCCG
CCGCCGGCTCCGCTCGCTGCCGGTGTCATTAGTGTGGTCGCTACCGGAGG
AGGTACGGCAGGCGTCGTCGTCGTTGGTGCGAGACTGATTCCTCCTGTCG
TCACCGCTGCCGCAGGAACGGGAGTCGGGCAGCCGCCTCCTTCGCTAGTG
GTAGGGGTAACGGTTGTCGTTTCTGCGGGGGGCGCCGCAGGTGTGGCAGC
AGTTGAGGTACTGATTCCCGCCTCCGCCGGCGGCGGCGCAGCAGCAGCCG
GTGCGGCAGGAACAGCAGCAGTGGAACCGGCAGCGGCGCTTGTTGTCGTC
ACGTCCGTGTTCGCCACCGCCGTCGCTGATTCCAAACCGGCTGTCCGTGG
TGATCCTGCTGCCTTTTCTGCAGCAGCGGTACCGTCGTCGGCAGAGTCGC
CTCCGCCCCTGTTGCCCAGTTCGTGCGACGGAGCAGCAGCAGCAGCATCA
GCGACGGCGACATTATCACCGCAAGACGGGCTTCCCGGCGCCGCGCTCTC
TGCCGGAGCGGCGCCGCCGTCTGCAGTAGCCCCCACAAGGAGCGGAGTGA
TGAACGGCATGGTGGTAATGATGTTGTGGGTCTGGATCTCCTGGGCGTTC
GAAAGCTCCACCACGCCTGTGTCTTGCGGGGTCACCAAACAAGCCGAAGA
CGCCGCCGGAACGGCGGTTGTTGTTGCCGCTGCTGGTGCCGCTGGCCCGG
CGGTTGACGCCGCGGGCGCCGGCGATAGAGGAGCTAGTCCTGGCGGAGCT
GCCGTGGCGGACTCGACCGCCTGTCCCAGCACATCAAGACCACCGGCGGC
ACTGCTGGTGCTTCCACTCGCATCAGCGGTGCCCGCCGGGATCGATTTGC
CGCCATCGTCATCACCGTTCACGTTCATAATCCATACACTTTTCCCAGTG
GACCAGGATATCCTTCTCGTGGGCTAAATGTCCAGCGCCTTTCTCTTGTC
GGCCCGAAGCCGCCGCGGGCGTTGCACCCTCTGCTGCTGCTGCTGCTGTT
GCTGCCGCTGCTTTCCTTTCCTCCCCTCCTGCTTCGCACCTTGCCCCCGC
TCCTCCGTGTCCACCGCCTGCTGCGCATCACCAGCGCCCACCAGCAGCAG
CTCCGGCGCTGCCGCCGCAAGCCCGCCTCGGCTCTGCGCCGGCGCACCTT
CGGATGGGCCGGCGGATGAGGAAGACAACGGTGGTGGCAGGGCACCACTG
TCACCACTGCTGCTTTCGCCGGAGGAGGGCCTGGCGGCGGCTTCCGCGGC
GACACCTGGTGCCGCCGCCACTACCTTAGCATTCGAGGAGGAGGACGAGG
ACGCGGCACTACTGACAAGAGCGGCAGCACCAGCACCGCTACCGGCCCCA
TCACTCAGCTCGGCGCCGGGCGCACCTGTCCCCTCCGCCGTGGCCGCTCC
AGGTGCCAGTGGTGCCACTGCTGCCGGTGTAACGGCGGTAACAGCGGCGG
TGCTAGAGTCGGCACGAGCGGCCAGGCTGGCATCATCGCCACCTTCACCA
GGGGTGCTTGTGGGCGCCGTCGTCCCGCCGCCGGCTCCGCTCGCTGCCGG
TGTCATTAGTGTGGTCGCTACCGGAGGAGGTACGGCAGGCGTCGTCGTCG
TTGGTGCGAGACTGATTCCTCCTGTCGTCACCGCTGCCGCAGGAACGGGA
GTCGGGCAGCCGCCTCCTTCGCTAGTGGTAGGGGTAACGGTTGTCGTTTC
TGCGGGGGGCGCCGCAGGTGTGGCAGCAGTTGAGGTACTGATTCCCGCCT
CCGCCGGCGGCGGCGCAGCAGCAGCCGGTGCGGCAGGAACAGCAGCAGTG
GAACCGGCAGCGGCGCTTGTTGTCGTCACGTCCGTGTTCGCCACCGCCGT
CGCTGATTCCAAACCGGCTGTCCGTGGTGATCCTGCTGCCTTTTCTGCAG
CAGCGGTACCGTCGTCGGCAGAGTCGCCTCCGCCCCTGTTGCCCAGTTCG
TGCGACGGAGCAGCAGCAGCAGCATCAGCGACGGCGACATTATCACCGCA
AGACGGGCTTCCCGGCGCCGCGCTCTCTGCCGGAGCGGCGCCGCCGTCTG
CAGTAGCCCCCACAAGGAGCGGAGTGATGAACGGCATGGTGGTAATGATG
TTGTGGGTCTGGATCTCCTGGGCGTTCGAAAGCTCCACCACGCCTGTGTC
TTGCGGGGTCACCAAACAAGCCGAAGACGCCGCCGGAACGGCGGTTGTTG
TTGCCGCTGCTGGTGCCGCTGGCCCGGCGGTTGACGCCGCGGGCGCCGGC
GATAGAGGAGCTAGTCCTGGCGGAGCTGCCGTGGCGGACTCGACCGCCTG
TCCCAGCACATCAAGACCACCGGCGGCACTGCTGGTGCTTCCACTCGCAT
CAGCGGTGCCCGCCGGGATCGATTTGCCGCCATCGTCATCACCGTTCACG
TTCATAATCCATACACTTTTCCCAGTGGACCAGGATATCCTTCTCGTGGG
CTAA
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