mRNA_Ecto-sp9_F_contig10575.524.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10575.524.1
Unique NamemRNA_Ecto-sp9_F_contig10575.524.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10575.524.1 vs.
Match: MAGE (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU2_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.130e-108
Identity = 156/161 (96.89%), Postives = 160/161 (99.38%), Query Frame = 1 
Query:    1 NNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSDRSVAENHLFKKLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQGVSQMATQEH 483
            NNEQHFKEVLRGKGQAGRGLLVLVLS++FCSSD+SVAEN LFKKLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQG+SQMATQEH
Sbjct:  112 NNEQHFKEVLRGKGQAGRGLLVLVLSIVFCSSDKSVAENQLFKKLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQGLSQMATQEH 272
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10575.524.1 vs.
Match: MAGE (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX60_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 6.510e-104
Identity = 153/161 (95.03%), Postives = 159/161 (98.76%), Query Frame = 1 
Query:    1 NNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSDRSVAENHLFKKLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQGVSQMATQEH 483
            NNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSD+SVAEN LFKKLHDHVD+RVPEKAWNG+NPKNKVRVHVDGLGDVHEHLAMF KQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQS+DPSDLLGLEEQESQG+SQMATQ+H
Sbjct:  255 NNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSDKSVAENQLFKKLHDHVDERVPEKAWNGSNPKNKVRVHVDGLGDVHEHLAMFTKQHYLLKKMVDKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSIDPSDLLGLEEQESQGLSQMATQDH 415
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10575.524.1 vs.
Match: MAGE (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAE6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-6
Identity = 46/154 (29.87%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   52 RGLLVLVLSVIFC------SSDRSVAENHLFKKLHDHVDKRVPEKAWNGNNPKNKVRVHV------DGLG-DVHEHLAMFAKQHYLLKKMV--DKPTADGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQESQGVSQM 468
            +G ++LV  +IFC      +S R + E  L++ LH  VD  +PE+     + + K R         +GL  +V   L       Y +K+    D  ++    E    YS+GPRS +EIG RQ++   A ++G++ DPS L  +EE    G  ++
Sbjct:  172 KGFILLVNGLIFCKGESKSNSTRKILERDLYRYLH-RVDDAIPEEPPVHGSTRFKARSQYCRGTQGEGLTPNVDTLLEQGVNWDYFIKEKATEDNCSSQNLDEGDILYSIGPRSAIEIGRRQIIVFCASILGEAPDPSMLREIEEDIEDGEEEI 324
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10575.524.1 vs.
Match: MAGE (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKL6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.310e-5
Identity = 40/138 (28.99%), Postives = 59/138 (42.75%), Query Frame = 1 
Query:   52 RGLLVLVLSVIFCSSD------RSVAENHLFKKLHDHVDKRVPEKAWNGNNPKNKVRVHVDGLGDVHEH-------LAMFAKQHYLLKKMVDKPTA--DGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPS 420
            RG ++LV  +IFC  +      R + E  L+K LH  VD  +PE+       + K R           H       L   A   Y +K+   +         E    YSMGPRS +EIG +Q++   A ++G+  D S
Sbjct:  176 RGFIMLVNGLIFCKGESKGNSMRKILERDLYKYLH-RVDDAIPEEPPAQGTSRAKARTQYRSGARTETHTPNADALLEQCAHWDYFVKEKATEENCPFQNLEEGDVLYSMGPRSAMEIGRKQIIAFCASILGEEPDLS 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10575.524.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
MAGE1.130e-10896.89domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MAGE6.510e-10495.03domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
MAGE1.060e-629.87domain-containing protein n=1 Tax=Fragilariopsis c... [more]
MAGE4.310e-528.99domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10575contigEcto-sp9_F_contig10575:1467..4170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue4.6e-85
Seed eggNOG ortholog2880.D8LSU2
EggNOG free text desc.MAGE family
EggNOG OGs2E9QF@1,2SG1D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMAGE homology domain
Ec32 orthologEc-15_002580.1
Exons4
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10575.524.1prot_Ecto-sp9_F_contig10575.524.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10575 1467..4170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928274.103514-CDS-Ecto-sp9_F_contig10575:1466..15951622928274.103514-CDS-Ecto-sp9_F_contig10575:1466..1595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 1467..1595 -
1692277816.735105-CDS-Ecto-sp9_F_contig10575:1466..15951692277816.735105-CDS-Ecto-sp9_F_contig10575:1466..1595Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 1467..1595 -
1622928274.1154516-CDS-Ecto-sp9_F_contig10575:2721..28321622928274.1154516-CDS-Ecto-sp9_F_contig10575:2721..2832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 2722..2832 -
1692277816.7459419-CDS-Ecto-sp9_F_contig10575:2721..28321692277816.7459419-CDS-Ecto-sp9_F_contig10575:2721..2832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 2722..2832 -
1622928274.1505907-CDS-Ecto-sp9_F_contig10575:3699..37891622928274.1505907-CDS-Ecto-sp9_F_contig10575:3699..3789Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 3700..3789 -
1692277816.753845-CDS-Ecto-sp9_F_contig10575:3699..37891692277816.753845-CDS-Ecto-sp9_F_contig10575:3699..3789Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 3700..3789 -
1622928274.1639042-CDS-Ecto-sp9_F_contig10575:4014..41701622928274.1639042-CDS-Ecto-sp9_F_contig10575:4014..4170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 4015..4170 -
1692277816.7616212-CDS-Ecto-sp9_F_contig10575:4014..41701692277816.7616212-CDS-Ecto-sp9_F_contig10575:4014..4170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10575 4015..4170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10575.524.1

>prot_Ecto-sp9_F_contig10575.524.1 ID=prot_Ecto-sp9_F_contig10575.524.1|Name=mRNA_Ecto-sp9_F_contig10575.524.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=162bp
NNEQHFKEVLRGKGQAGRGLLVLVLSVIFCSSDRSVAENHLFKKLHDHVD
KRVPEKAWNGNNPKNKVRVHVDGLGDVHEHLAMFAKQHYLLKKMVDKPTA
DGGTESIPHYSMGPRSVLEIGHRQLVELMAKVMGQSMDPSDLLGLEEQES
QGVSQMATQEH*
back to top

mRNA from alignment at Ecto-sp9_F_contig10575:1467..4170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10575.524.1 ID=mRNA_Ecto-sp9_F_contig10575.524.1|Name=mRNA_Ecto-sp9_F_contig10575.524.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2704bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10575:1467..4170- (Ectocarpus species9 EcSCA_722f female)
AACAACGAGCAACACTTCAAGGAGGTCCTCAGGGGGAAGGGTCAGGCGGG
GCGGGGGCTTCTGGTTTTGGTTCTAAGCGTCATATTCTGCAGCTCGGATA
GGAGCGTAGCCGAGAACCACCTGTTCAAGAAGCTCCACGACCACGTCGAC
AAGAGGGTGAGAGAGCACGTGGACAACAACAACCGCCGGCGTTTGTTGGA
AGCATCATGTGTTGTACCGTTCTGTTTCCAAGCGTTTGCTATGATGAAGT
ATGTTAGACGTGCTTGTTCTGATTGATTTGCTGGTTTTGGAAGCATCTCA
TGCATACCGCTCTGTTTCCAAGCGCTTGCTATGAAAGTTGTGCTTGTTCT
GATTGACTTGCTGGTTTTGTTCTTGGTCCAGGTTCCCGAGAAGGCGTGGA
ACGGGAACAACCCCAAGAACAAGGTCAGGGTGCACGTCGACGGGCTCGGT
GATGTCCACGAGCACCTCGCGGTGAGTGGGTGGTTCAGGGGTTAGGGCCG
TTATACACAGCCTTTTTGCTTCCAATGTTGCTCAAATTTCCAAATCCGTG
GACCGTTGAACCTCGATTTGCGGCCGAGGAAAAATTTGGGAAGTTTGGAA
ATTTGGAAAACTATTGCACTGGCATCGAAACGAGTTTTGGAAAAATATTG
GAAATCTGGAAAATTCCTCGATAGGACGAGCGATAGCAGTCGTTAGAATA
GGAGAGAGAAAAAGCGAAGCGTTTCGAGGCAAGGTATGCGAAAAGCTTCT
TGGAAAAGAACGAAGAGAGAAAAAACGTAAAAACGAAGGTTTCTCGACCC
AAGATTTGCGAGAAGCTTCTTAGAAAAGAACGAAGAGAAAAAACGAAGAA
GTTTCGGCGCATGGTTTGCGAAAAGCACGTTGGTGTACCTCGTACGATGG
TACAGCCTGTTGGTAGAGGCACTGAAGTCGGTTGACCGAAGAACAACATA
CGAGGCAACTCTCATCGCCTCATCCTTACTGTTTCGTGACTTCGTACGTC
GATGTATACATACGATGGGGGTGTATTCTCGCCTGTCTCGCCCGAAGACC
ATGCATATGCTAGAGTGTAGTTCTTCAACAGAGTCAACAAAAGTCCAGTT
GTATCGAGCGGATTTTCTCAATACTTGTGCACAGACTTCAACACATCCCT
TCGACAGCTGTTGTGATGTTTTCTCGAGAACGTACATATAGTCTCTCTCT
GATTGTAAGTATATTACCTAGAGTCGTGCGGTGGCGGAACTTGTTTCGTT
TCTCATGGCACGTTTCGATCGGACGGTTTTCGGTTGTGGCCTTGTTAGAC
CCCTCCCCCGCCCTTACGCTTGGTTGGTTGCATGGCAGATGTTCGCGAAG
CAGCACTACCTCCTGAAGAAGATGGTGGACAAGCCCACCGCGGACGGGGG
CACCGAATCGATCCCGCACTACTCCATGGGACCTCGATCTGTCTTGGAAG
TGAGTTGGTATTTTCCTTCTTTTTTTTTTTGTTTCCCTTCTTTTCTTTTC
TTTTCTTTTCTTGTCTTCTCTTTCCTTTTGGTTTCTGTCCTTGTCTTCTC
ACGCACCGCGCCGTGCAACAGATAGTATCAACCTACCACAATTATTGAGA
ATGGCCACTGCTGTTACCTTACCTCTGTTGTTCTCTTCCCACGCACATGA
TCTTGGCGCTTCTATTGCCTATCGTATGCATATATACGTTGCCGCAAGCC
TGACACTGGGACCGTGATGAGTAGGATCGGCAACAGAGTAGTGCCAGGTC
TTGCTCATGTTCTAGTCAGCAAGATCGCTTCTTTTGTTCGTGAGGAACGT
TTTCACCAATACAGCAGTGGCGTGTTTAGAGGTACCCGCACATTGTTTTA
TGCAGAGTGTACCACGTCCTACTCCCAGCTGTGTTTATTTTTGTGCTCAT
GCGTGGATGCTTGCGTGCTTCATTTTGTCTACCCCGCTTCCCCCACCCCA
CCCTGTTCACAAGCTTCACTACGGTTTGACCTTTGAGTAAGTTCCGCTCT
ACCCCGCGCTTTGCACGCTGCGCTCTAACCTCTACGCCAACTTATGTGTG
ATTTGACTTGTTCTCTGTAGTTGTCGCTATCACTGCTTCATTGGGTGATC
GGTCCACTCTAGTCCCCGGCAACCGCACTGCCACCGCTGCTGTTTCTTCT
CTAGCTTTCATGGCTTTTGAAAAAACCCTGTTGACGCCAACCCAACTCTT
TCCTTTTCGGCAACACACGTGCTTCTGCTATCATACCCCTCTGCTTGTTC
TCGTTCCATACCTGTCCTTCACCGCCACCTTGCTCACTGCCACCGCCCTC
CACGGCTTTGTCTCCCGCACCACTAACGTAACCATGTAACTGGTATTACG
CATCCCCTCGCGGCGCTTCGCGCTTAGTGATGTGACACGCCTTGTCTGGT
GAAAACCCGACGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCCAATG
GTCTAACGACTGCGGCATGCACGACTATGAGTACCCCGCCCCCGCCCCCA
AAATTTTCGATGAAATTTTCGATGGCCCGCACAACGAGAGTGATGGACCT
CTTCGCCGACCCGTCCCGTCGCCAGATCGGGCACCGCCAACTCGTGGAAC
TCATGGCCAAGGTGATGGGACAATCCATGGACCCGTCGGACTTGCTGGGT
CTGGAAGAGCAAGAGTCGCAGGGCGTCAGCCAGATGGCCACCCAGGAACA
TTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10575:1467..4170-

>mRNA_Ecto-sp9_F_contig10575.524.1 ID=mRNA_Ecto-sp9_F_contig10575.524.1|Name=mRNA_Ecto-sp9_F_contig10575.524.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10575:1467..4170- (Ectocarpus species9 EcSCA_722f female)
AACAACGAGCAACACTTCAAGGAGGTCCTCAGGGGGAAGGGTCAGGCGGG
GCGGGGGCTTCTGGTTTTGGTTCTAAGCGTCATATTCTGCAGCTCGGATA
GGAGCGTAGCCGAGAACCACCTGTTCAAGAAGCTCCACGACCACGTCGAC
AAGAGGAACAACGAGCAACACTTCAAGGAGGTCCTCAGGGGGAAGGGTCA
GGCGGGGCGGGGGCTTCTGGTTTTGGTTCTAAGCGTCATATTCTGCAGCT
CGGATAGGAGCGTAGCCGAGAACCACCTGTTCAAGAAGCTCCACGACCAC
GTCGACAAGAGGGTTCCCGAGAAGGCGTGGAACGGGAACAACCCCAAGAA
CAAGGTCAGGGTGCACGTCGACGGGCTCGGTGATGTCCACGAGCACCTCG
CGGTTCCCGAGAAGGCGTGGAACGGGAACAACCCCAAGAACAAGGTCAGG
GTGCACGTCGACGGGCTCGGTGATGTCCACGAGCACCTCGCGATGTTCGC
GAAGCAGCACTACCTCCTGAAGAAGATGGTGGACAAGCCCACCGCGGACG
GGGGCACCGAATCGATCCCGCACTACTCCATGGGACCTCGATCTGTCTTG
GAAATGTTCGCGAAGCAGCACTACCTCCTGAAGAAGATGGTGGACAAGCC
CACCGCGGACGGGGGCACCGAATCGATCCCGCACTACTCCATGGGACCTC
GATCTGTCTTGGAAATCGGGCACCGCCAACTCGTGGAACTCATGGCCAAG
GTGATGGGACAATCCATGGACCCGTCGGACTTGCTGGGTCTGGAAGAGCA
AGAGTCGCAGGGCGTCAGCCAGATGGCCACCCAGGAACATTGAATCGGGC
ACCGCCAACTCGTGGAACTCATGGCCAAGGTGATGGGACAATCCATGGAC
CCGTCGGACTTGCTGGGTCTGGAAGAGCAAGAGTCGCAGGGCGTCAGCCA
GATGGCCACCCAGGAACATTGA
back to top