mRNA_Ecto-sp9_F_contig1057.522.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1057.522.1
Unique NamemRNA_Ecto-sp9_F_contig1057.522.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1057.522.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1057contigEcto-sp9_F_contig1057:24884..26468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-21_001300.1
Exons2
Model size493
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1057.522.1prot_Ecto-sp9_F_contig1057.522.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1057 26229..26468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928273.5908158-UTR-Ecto-sp9_F_contig1057:24883..251281622928273.5908158-UTR-Ecto-sp9_F_contig1057:24883..25128Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1057 24884..25128 +
1692277816.631755-UTR-Ecto-sp9_F_contig1057:24883..251281692277816.631755-UTR-Ecto-sp9_F_contig1057:24883..25128Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1057 24884..25128 +
1622928273.6018972-UTR-Ecto-sp9_F_contig1057:26221..262281622928273.6018972-UTR-Ecto-sp9_F_contig1057:26221..26228Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1057 26222..26228 +
1692277816.6428645-UTR-Ecto-sp9_F_contig1057:26221..262281692277816.6428645-UTR-Ecto-sp9_F_contig1057:26221..26228Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1057 26222..26228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928273.615594-CDS-Ecto-sp9_F_contig1057:26228..264681622928273.615594-CDS-Ecto-sp9_F_contig1057:26228..26468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1057 26229..26468 +
1692277816.6513178-CDS-Ecto-sp9_F_contig1057:26228..264681692277816.6513178-CDS-Ecto-sp9_F_contig1057:26228..26468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1057 26229..26468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1057.522.1

>prot_Ecto-sp9_F_contig1057.522.1 ID=prot_Ecto-sp9_F_contig1057.522.1|Name=mRNA_Ecto-sp9_F_contig1057.522.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
MQRNGEEKTRHAATNGNTYVSSRISGGPGGGGGGLTSPSRSRKLTPRHIT
TGRASRSPSPVNHRRISLEEGVELSREPWR
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mRNA from alignment at Ecto-sp9_F_contig1057:24884..26468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1057.522.1 ID=mRNA_Ecto-sp9_F_contig1057.522.1|Name=mRNA_Ecto-sp9_F_contig1057.522.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1585bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1057:24884..26468+ (Ectocarpus species9 EcSCA_722f female)
AGAGCCGCCACCGTCTTCCGCGAGGACCTGTCAGCTACGTCGACATCGCT
TGTATGCTCAAGCTGGCAGCTAGAATCCGAACAAGAGCTACCGGCCACTA
CAAGTGCTTCCCGAAGCGCGCACCAGAAGTATAAAACGACGATAACGTAG
TCAAGCACCTCTCGAACATCCTTGTTGCTCGTCTTGCACCTGGGAACACG
GAAGCTCTGGTCTACCTCGGGGGGCATACTCTGCTAGCAGCTTAGGTGAG
CGTTGGGACAGAGAAGGCGCAGACTACCTCTCAGCTTTGTGGGACCATAA
GCATTACGCCAATAATTCGTTCGGTTGCGTAGGCGCTGTGGTGTGCTGCG
CCTCCGCCTCTGCGTGTCGCGTTCTTGTCGGAAAACATCAAATCTAAGTG
ACCTACAAGGTACCTCGAGAGCTGAGGAGGTATAGGGCTGGTCTTGTCCA
AATTGGTGCACCCACACTTCACACCCACACCACCAGTTAGAACCGGAAGA
TCCACAGAACTGGTGTGGGAGTAAAATGGTGGCGGGTCTATTCACCGCTT
TGTAGCACACCAGACCAATAGCTGGAGTCGAGTGTGCGGCACAACAACGA
ACAGCCCCATGCAGCATTGGCGACTGGGGGCCTGGAACGAGCGTTCCCCG
TTGGGGATGGCCCAGCGCGGCCTGCTGCGTCCCTTGTCAGGGTGGCGGCC
AATAAGTCTCCTGGCCCACCGCGGCCGGGGACCAAACTGGCGCAAACGTG
GGCGGGACGGACGCGTAGAGTAGCAACCACTTGGGAGGGTGCGGCACATG
CTGCGGTCCTGATCCCTGCCGCACGGGTGGCTGTTGTTGTTGTTGTTGGT
GGTGGTGGTGGTGATTCGCATAGGGCGAGGACTCCTCTTGCTCGCGAGTT
GGTAGCGTGTGTCGCACGCGGCGCGAGTGGTGGAGTGCTGGTGTGCCGAC
GTTGGGGGAGGGAAGCACGACAGTCCCGCCATCTACCCGCCGTTAGACCG
AATTTCTGTTGCCTTTGGGAACTCTGGGTTCCGGTTCGATGAACGCTGGT
TTCAACTAAATGATTTTTCATTCATTTCAAATGGACTCCCGGATGTTCTG
ACCCAGAGGAGTGCTTGCTGGAACTTCGGGCAGAAAAACAAGAAAAGTGG
TCTTGTCACGCGGGTGAAGCAGAGCTGCAGATGGAGTACGGCGCCTTCGA
TATTGCAGATCGTCCTTTTCGTCCTTGCCCGCCTGCTGGTCACACCCAGA
AATCCACCTCCACACACTCTTCGTTTTTTTTAACACCTGGGAACACCCCC
CGATACGAAACCCGCGCCGCCATCCCCTCCGACAGCAGGTCCTTCATGCA
GAGGAACGGAGAAGAGAAGACAAGGCACGCGGCCACAAACGGCAACACCT
ACGTCAGCAGCAGAATCTCAGGCGGCCCCGGCGGCGGCGGCGGCGGCCTG
ACCTCGCCGTCCAGATCTCGCAAGCTTACTCCGCGCCATATCACCACCGG
CCGGGCCTCGCGATCCCCTTCACCAGTGAACCACCGCCGCATATCCCTGG
AAGAAGGCGTGGAGCTTTCGAGAGAGCCGTGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1057:24884..26468+

>mRNA_Ecto-sp9_F_contig1057.522.1 ID=mRNA_Ecto-sp9_F_contig1057.522.1|Name=mRNA_Ecto-sp9_F_contig1057.522.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1057:24884..26468+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGAGGAACGGAGAAGAGAAGACAAGGCACGCGGCCACAAACGGCAA
CACCTACGTCAGCAGCAGAATCTCAGGCGGCCCCGGCGGCGGCGGCGGCG
GCCTGACCTCGCCGTCCAGATCTCGCAAGCTTACTCCGCGCCATATCACC
ACCGGCCGGGCCTCGCGATCCCCTTCACCAGTGAACCACCGCCGCATATC
CCTGGAAGAAGGCGTGGAGCTTTCGAGAGAGCCGTGGCGAATGCAGAGGA
ACGGAGAAGAGAAGACAAGGCACGCGGCCACAAACGGCAACACCTACGTC
AGCAGCAGAATCTCAGGCGGCCCCGGCGGCGGCGGCGGCGGCCTGACCTC
GCCGTCCAGATCTCGCAAGCTTACTCCGCGCCATATCACCACCGGCCGGG
CCTCGCGATCCCCTTCACCAGTGAACCACCGCCGCATATCCCTGGAAGAA
GGCGTGGAGCTTTCGAGAGAGCCGTGGCGA
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