mRNA_Ecto-sp9_F_contig1056.512.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1056.512.1
Unique NamemRNA_Ecto-sp9_F_contig1056.512.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 7.330e-66
Identity = 119/135 (88.15%), Postives = 120/135 (88.89%), Query Frame = 2 
Query:    2 GSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSSPDDGGDVRMKDSGALPLASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDXXXXXXXXXXEESDPEA 406
            GS CNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDS+ DDGGDVRMKDSGA P ASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGED          E SDPEA
Sbjct:  463 GSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSASDDGGDVRMKDSGARPSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDGGGEASDPEA 597
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1056.512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 3.120e-65
Identity = 123/135 (91.11%), Postives = 124/135 (91.85%), Query Frame = 2 
Query:    2 GSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSSPDDGGDVRMKDSGALPLASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDXXXXXXXXXXEESDPEA 406
            GSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDS SDSS DDGGDVRMKDSGA P ASAKGPEKE DTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFD+VEVVASSVFGED   XXXX   EESDPEA
Sbjct:  453 GSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSHSDSSSDDGGDVRMKDSGARPSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSDXXXXGEGEESDPEA 587
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1056.512.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.330e-6688.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.120e-6591.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1056contigEcto-sp9_F_contig1056:314..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue5.8e-31
Seed eggNOG ortholog2880.D8LFD8
EggNOG OGs2EXJ4@1,2SZ7F@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1723
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1056.512.1prot_Ecto-sp9_F_contig1056.512.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1056 471..1180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.6744213-UTR-Ecto-sp9_F_contig1056:313..4701622928271.6744213-UTR-Ecto-sp9_F_contig1056:313..470Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 314..470 +
1692277815.7739718-UTR-Ecto-sp9_F_contig1056:313..4701692277815.7739718-UTR-Ecto-sp9_F_contig1056:313..470Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 314..470 +
1622928271.723355-UTR-Ecto-sp9_F_contig1056:1180..24941622928271.723355-UTR-Ecto-sp9_F_contig1056:1180..2494Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 1181..2494 +
1692277815.8120131-UTR-Ecto-sp9_F_contig1056:1180..24941692277815.8120131-UTR-Ecto-sp9_F_contig1056:1180..2494Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1056 1181..2494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.6924088-CDS-Ecto-sp9_F_contig1056:470..5921622928271.6924088-CDS-Ecto-sp9_F_contig1056:470..592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 471..592 +
1692277815.784996-CDS-Ecto-sp9_F_contig1056:470..5921692277815.784996-CDS-Ecto-sp9_F_contig1056:470..592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 471..592 +
1622928271.7087364-CDS-Ecto-sp9_F_contig1056:1050..11801622928271.7087364-CDS-Ecto-sp9_F_contig1056:1050..1180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 1051..1180 +
1692277815.79974-CDS-Ecto-sp9_F_contig1056:1050..11801692277815.79974-CDS-Ecto-sp9_F_contig1056:1050..1180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1056 1051..1180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1056.512.1

>prot_Ecto-sp9_F_contig1056.512.1 ID=prot_Ecto-sp9_F_contig1056.512.1|Name=mRNA_Ecto-sp9_F_contig1056.512.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
MKDSGALPLASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEK
EFDVVEVVASSVFGEDDSDDSDDGGGEESDPEA*
back to top

mRNA from alignment at Ecto-sp9_F_contig1056:314..2494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1056.512.1 ID=mRNA_Ecto-sp9_F_contig1056.512.1|Name=mRNA_Ecto-sp9_F_contig1056.512.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2181bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1056:314..2494+ (Ectocarpus species9 EcSCA_722f female)
AGGAAGCGTGTGTAACGACCAAGAGGACGTGTTCGACTGCGACGTGAACG
GACCGGCGTTGGCGGCTCTTGGAAGGGCGCTAGGCCTCCACACCGAAGAC
CCCCCTACGTCGGACTCGGACTCCGACTCCTCTCCCGATGACGGTGGGGA
CGTCCGAATGAAGGACTCAGGCGCGCTACCATTGGCATCAGCAAAGGGCC
CCGAGAAGGAGCCGGACACTGCAGATGGCGAGCCTGGGAAGGGCATTGGG
AGCATGACCCAGTCGGATCTCGTCTGGTGGTGAGATGCACGATATGGCTT
GACGGACGCCGGTTGGCTCCTTTCAGCCGATAAATTGCTCTTGTGTGCTG
TCGAGATCCCCCTTCGGAGAGGGTGTCGAGATCCCCCCCTGTCTGTCGAG
TACGGCTCACTCTTTTCGCAACAGCAGTAGAACGTGTTTCTTTGGATGTC
CGGCTCGGCGCTGCCCCGGCCCCAGCCGTCTCTCGAAATCGCATCCGAGT
GATAGTAGGAGCGCGGTGTGTTCACGAGCCACGAGTGCTGTGTCCACTTG
GCTTTTTGTTTTCTTCGGACTATTACGATGAATGTTGAGCTTTCCAGTCG
ACTGCTATCTCCGTGCGTTTCAAAGCGTTGTGCTGTGATGCAAACAAAGG
CTCGTATAGTATTGTATACTATCTGTCAACACACGCACGTTCTACAGTAT
CTACCCTCTGTCCCTGAATGTTGTTACCCGGCGGCAGGCTGCTGCTGTTC
CCGTTCTTCGAGAAAGAATTCGACGTGGTAGAAGTCGTGGCGTCGAGCGT
TTTCGGGGAGGACGATTCGGACGACTCGGACGACGGGGGAGGGGAAGAAA
GCGATCCGGAAGCGTGACTGACGAATATGGCGACCGTCCGGGGGTGATAG
CGTCGGTTTTCTGTTCTGGACGCGAAGAAGTCCAACTGTCGGTGCTGCTG
TCGCTCAGATGTACGAGCATGTGTGTTTTTTGTGTTTCTGTGGGTTTTGT
TCCTTGTTTTTTGTCGTGGGGCTGTACCCTGTCTCGTCGACCGACGCCTG
TTGCAGCACGTGGAAGATGGCGGACCTTTACCTTTTTCGTGCCCTGTTGC
CGTCGGCTACACGGGTCGCCCGCTGAAATGGCGACGACATGTGCCTTTGG
TGTTCCCTGTTTTTGTTGATCAAGGCGTGTCGCTTGTATCAAGTACGACG
GTGCTGCTGTTTGATAGGCGACGGCACATGTCTTTGGTTTTCCTTGTTTT
GTTGATCGAGGCGTGCCGCATGCATCAAGTACGACGGTGCTGCTCTTGGG
GCGGGGTTGCTTGAGAAGCACGCGAAATGCAAGGGTGATTGATTGTTCCC
TCTCGCCGTCGACACGAGCTGCAGCGACAATGCTGCGTGACGAGCCCCGG
GCGTTGCGCGCTAACAACGAGGAAATGTTGACGATGATGGCGATGGTTGG
TTGTGGCATTGCGGTTCAGGGGCAGTTTCGCCACCGAAGGCGAAAACCAA
ATCGCCGGTAGGTGAAGCCCGACGACAATCGCCATTCTCGCCCAGGTGCC
AAGCATGGTGCCCGTTTTCTTGTGCCGTTGTACCTCACTCCACCATTAAG
TGTTTGGTTTGAGAAGTTCAATTTGTTGGTGGGTTTTGCTGCTGTACGGC
TGAGAGAAACGGCCGTAGACGAGCGTTCCCATCACCAAAGAACGTGAGAG
TCAGCAAGACTATGGTTGACCTAGGCATCAATGAAGCTCGTATGTGACTA
CCGCTAAGTTACGAATCCTACACTGAAAACCGACACATTAGCCGTTGTTG
GCCCGAGCCTGCGGCATTTGTTCAGTTGCTTATGCGATTTGCGGCACCCG
CTGTCTTGTTTTATTTTCATCTAGGGAAGAAATGGGAAGGTTGCACCAGT
AATGACGGATACCGGCTTACGGGTGTAAGAATAATCCCCCTTTCGGTGAT
GTCGTTCAGCGATTCGATTGACATCCTGAGCCTGCAGAGGTTGTTGTCGT
CCTTGTTCCTGTGCCCTGGAAGATGATTTTTCGTTGTTTCTTCGTCACGT
CATGGAACCTGAAAACTTCCAGTAAAATTCGTCACGGATTTCGGGAGAAT
AGTTTTCCCCATCTTGGCCGTGATGTCCCTGGAGCCGTACAATACAAGAT
TTTGACTTCGTGCGTCCATGGTGCACTTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1056:314..2494+

>mRNA_Ecto-sp9_F_contig1056.512.1 ID=mRNA_Ecto-sp9_F_contig1056.512.1|Name=mRNA_Ecto-sp9_F_contig1056.512.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1056:314..2494+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGGACTCAGGCGCGCTACCATTGGCATCAGCAAAGGGCCCCGAGAA
GGAGCCGGACACTGCAGATGGCGAGCCTGGGAAGGGCATTGGGAGCATGA
CCCAGTCGGATCTCGTCTGGTGATGAAGGACTCAGGCGCGCTACCATTGG
CATCAGCAAAGGGCCCCGAGAAGGAGCCGGACACTGCAGATGGCGAGCCT
GGGAAGGGCATTGGGAGCATGACCCAGTCGGATCTCGTCTGGTGGCTGCT
GCTGTTCCCGTTCTTCGAGAAAGAATTCGACGTGGTAGAAGTCGTGGCGT
CGAGCGTTTTCGGGGAGGACGATTCGGACGACTCGGACGACGGGGGAGGG
GAAGAAAGCGATCCGGAAGCGTGAGCTGCTGCTGTTCCCGTTCTTCGAGA
AAGAATTCGACGTGGTAGAAGTCGTGGCGTCGAGCGTTTTCGGGGAGGAC
GATTCGGACGACTCGGACGACGGGGGAGGGGAAGAAAGCGATCCGGAAGC
GTGA
back to top