mRNA_Ecto-sp9_F_contig10552.509.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10552.509.1
Unique NamemRNA_Ecto-sp9_F_contig10552.509.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10552.509.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 521 bits (1341), Expect = 9.460e-174
Identity = 336/391 (85.93%), Postives = 348/391 (89.00%), Query Frame = 2 
Query:   59 MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGEHNTTESCRNIEHPLWQRVAVFDLDLCRAAEGIARDAPANPPRDSNPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQSXXPFASNFVPPAATPLPXXXXXXXXXXXXXXXXXAAVVAPVFRASLVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGDGDAGVITTPXXXPLVAVDTWVSLQQGTAELRVQILIKNPREPAGSNVGNQRAQVGGDEAWAAAFEALSAEGLVKTSLDLEQRSLDERLLDVQETYDFSAGSGYREGKPDEDEGARNLDQGKEG 1231
            MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDG HNTTESCRNIEHP W+RVAVFDL+LCRAAEGIAR AP  PPRDSNPTA  XXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SLNPFAVAEAETQ XX FASNFVPPAATPL                  AA  A V RAS+VLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLG+GDAGVITT    P+VAVDTWVSL+QGTAELRVQIL+K PREPA SNVG+QRAQVGGDEAWAAAF+ALSA+GLVKTSLDLEQRSLDERLL+VQETYDFSAGSGYREGKPDEDEGAR+LDQGKEG
Sbjct:    1 MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPVKPPRDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SLNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASPRSKSSCPPAAA-AWVLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWLEEEDGAPLLPLGNGDAGVITT-HPPPVVAVDTWVSLRQGTAELRVQILMKTPREPASSNVGSQRAQVGGDEAWAAAFDALSADGLVKTSLDLEQRSLDERLLEVQETYDFSAGSGYREGKPDEDEGARDLDQGKEG 388
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BLAST of mRNA_Ecto-sp9_F_contig10552.509.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.520e-7
Identity = 84/352 (23.86%), Postives = 117/352 (33.24%), Query Frame = 2 
Query:   83 EVRVCQARHLVP-----KGRKRNGDD-----------------KPAVLVADAVWALMSIDGEHNTTESCRNIEHPLWQRVAVFDLDLCRAAEGIARDAPANPPRDSNPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQSXXPFASNFVPPAATPLPXXXXXXXXXXXXXXXXXAAVVAPVFRASLVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATDRLEWL---------EEEDG----APLLPL--------------------GDGDAGVITTPXXXPLVAVDTWVSLQQGTAELRVQILIK 973
            EVRV + RHL        G    GDD                 +   L+   +   +++  +H  TE C +++ P+W +VA F  D C      A       P +  P+A                                                           P   AE   Q          P +  P P                 AA  A        LHLRV    L SK++LG+V VD+  L+ +GG  L TDR+ +          EE+DG    A ++PL                    G   A V +     PL AVDTWV+L+QG  ELRVQ+L++
Sbjct:    8 EVRVAEGRHLFRAVSRGSGVPEAGDDGSERKKYSASAGAATSGRAPPLLNATLCVSITLGDKHVLTEQCADLQRPVWDKVASFTYDPCPPPADAAAA-----PHEVEPSAAAVEMTDMFRAMGL---------------------------------------------PSRAAEPHDQQLP-----LEPHSGKPSPPAAAAGLQQLSASATAGAAPTADAHARRRALHLRVFSDSLVSKDLLGEVTVDVAALVATGGALLVTDRIGYTDSGGAGSRGEEDDGDSSGAFMVPLALAASPTPPRSHHSERVSANGAAAAAVASAVDFEPL-AVDTWVALRQGDGELRVQVLVR 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10552.509.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.460e-17485.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.520e-723.86protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10552contigEcto-sp9_F_contig10552:1148..4369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001230.1
Exons2
Model size1306
Cds size1248
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10552.509.1prot_Ecto-sp9_F_contig10552.509.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10552 1206..4369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.4244487-UTR-Ecto-sp9_F_contig10552:1147..12051622928271.4244487-UTR-Ecto-sp9_F_contig10552:1147..1205Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10552 1148..1205 +
1692277815.6724942-UTR-Ecto-sp9_F_contig10552:1147..12051692277815.6724942-UTR-Ecto-sp9_F_contig10552:1147..1205Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10552 1148..1205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928271.4379718-CDS-Ecto-sp9_F_contig10552:1205..21691622928271.4379718-CDS-Ecto-sp9_F_contig10552:1205..2169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10552 1206..2169 +
1692277815.6822324-CDS-Ecto-sp9_F_contig10552:1205..21691692277815.6822324-CDS-Ecto-sp9_F_contig10552:1205..2169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10552 1206..2169 +
1622928271.4599655-CDS-Ecto-sp9_F_contig10552:4085..43691622928271.4599655-CDS-Ecto-sp9_F_contig10552:4085..4369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10552 4086..4369 +
1692277815.6912115-CDS-Ecto-sp9_F_contig10552:4085..43691692277815.6912115-CDS-Ecto-sp9_F_contig10552:4085..4369Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10552 4086..4369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10552.509.1

>prot_Ecto-sp9_F_contig10552.509.1 ID=prot_Ecto-sp9_F_contig10552.509.1|Name=mRNA_Ecto-sp9_F_contig10552.509.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=416bp
MLLHRRQCEVRVCQARHLVPKGRKRNGDDKPAVLVADAVWALMSIDGEHN
TTESCRNIEHPLWQRVAVFDLDLCRAAEGIARDAPANPPRDSNPTAAAAA
AATAAASSSSRNSSATFERPSTVAAAVPARKNKAAAAAATPAAAAVKRSS
SSSLNPFAVAEAETQSLNPFASNFVPPAATPLPPPPPAAASPRSKSSCPP
AAVVAPVFRASLVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDRLATD
RLEWLEEEDGAPLLPLGDGDAGVITTPPPPPLVAVDTWVSLQQGTAELRV
QILIKNPREPAGSNVGNQRAQVGGDEAWAAAFEALSAEGLVKTSLDLEQR
SLDERLLDVQETYDFSAGSGYREGKPDEDEGARNLDQGKEGVREGRLAFG
FFLMLVFLLGCVEEG*
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mRNA from alignment at Ecto-sp9_F_contig10552:1148..4369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10552.509.1 ID=mRNA_Ecto-sp9_F_contig10552.509.1|Name=mRNA_Ecto-sp9_F_contig10552.509.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3222bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10552:1148..4369+ (Ectocarpus species9 EcSCA_722f female)
ACTGCTTCAACAACAACGTGCAGCCCTTCCAAAGGCCTCCTGCACCTGCC
CATGACCAATGCTTCTGCACCGGAGGCAATGCGAGGTGCGAGTGTGCCAA
GCTCGACATCTGGTCCCCAAGGGCAGGAAGAGGAATGGAGACGACAAGCC
TGCTGTGCTGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCGACGGCG
AACACAACACAACTGAGAGCTGCCGGAACATCGAACATCCTTTGTGGCAG
CGGGTAGCCGTCTTCGACCTCGACCTCTGCCGTGCTGCTGAGGGGATTGC
AAGGGACGCCCCAGCAAACCCTCCAAGAGACTCGAACCCCACAGCGGCGG
CGGCGGCGGCGGCGACGGCCGCCGCATCCTCTTCCTCCCGGAATTCAAGT
GCAACTTTTGAACGGCCGAGTACCGTTGCTGCAGCAGTACCGGCTAGGAA
AAACAAGGCAGCAGCAGCAGCAGCAACACCCGCCGCTGCTGCTGTCAAGC
GATCGTCGTCGTCATCCCTCAACCCTTTCGCGGTGGCCGAAGCCGAGACC
CAGTCACTGAACCCGTTCGCCTCCAACTTCGTGCCGCCGGCAGCTACGCC
GCTGCCGCCGCCACCCCCAGCAGCAGCATCCCCAAGATCTAAATCTTCTT
GTCCGCCAGCGGCGGTAGTAGCACCGGTTTTTCGGGCATCCTTGGTCTTG
CATCTCCGCGTGCTGCACGGCCGCCTTAGGTCGAAAGAAGTGCTGGGTGA
CGTAGCCGTGGACTTGGTCCCGCTGCTTCGGTCAGGGGGCGACCGGCTGG
CCACAGACCGCTTGGAGTGGTTGGAGGAAGAAGATGGCGCGCCGCTGCTG
CCGCTGGGTGATGGTGACGCCGGCGTGATTACTACTCCTCCTCCTCCTCC
GCTTGTTGCGGTTGACACCTGGGTGTCTCTGCAACAGGGCACCGCTGAGC
TTCGGGTGCAGATACTGATAAAAAACCCCAGGGAACCAGCGGGCAGCAAC
GTGGGAAATCAACGTGCACAAGGTATGTACATACGTCGGCACTTTTGCTC
TGACCGCCAATTTACAAAGAATATCCGACGGGCAGCCAGGTGCCATGGAT
GAACAGGGCCAACAAATGGTTGGAAGCGCAAACCTTACTGTGGTACTGCT
GTATATGGTCTGTATCGACGTGCGCACAGAGTAACAGGCGGGGAAGGACG
CACTCGGAGTAACATAAACTTCGGAACTATTGTCGCTGCCGTAGTTTTGC
TTACACGCCCACAATTCTCCCCGCAATCTGTGTTACGGGGGGGAAGAACA
GGGATTTTGACGCTGGCTCTTTTCCCATACTGCATCCTATACAAAAAAAA
AAAAACTTCCCGCCGGGGTTAGGTTAGGCATTCTATTGTCATCAGTAGAG
GACATCATGAAGAGGCGTAGTGCGTGCTGGCACGTTCAGGTTTGCTACTG
GAGCGGAAATATCGAGGGTCGCAGCAGCCTCTTATGAAAACAGTCCAAAT
CTTCGCCGGAACCAAGCGGCATCCAACATTTGTCACAGCCATGCTCGCCG
CCACCGACCCCAATCTCCTGAACTACGGGTTTACAGCAGTAGCCGATGCC
ACTAGCTACTGCTGACACACCTCCGTTCAGGGGTTTACGGTACGTGGCGG
TGAGCATGGCTGTGACAAATGTTGGATGCCGCTTGGTTCCGGCGCAGATT
TCGGACTGTGTTCAAAGGCTGCTGCGACCTTCGATATTTCAGCTCCAGTA
GCTAACCTGAACGTGCCAGCACGCACGACGCCTCTTCTTGATGTCCTCTA
CTGCTTACAATAGAATGCCCAACCTAACCCTCAAAACTGACCTTATTTGA
GCGCCTTCCGTTTTGGCTCCTTTGACTTGAATTTAGAATGGCGTGAATTT
TTTTCTTGATTTCAAAGGAGGCCTGTGGAGGTAGACGAGTGAAATGTATA
TTTTTAGCAGCCTCTACTGCTGCCCTGTGCGAGAATCAACGATTTTTGTT
TTTCGCGATTCCTCCCGACTGGTCTTGTGTGTCTGTTGTAAAATTTCTGA
ACATCTTGCGTTTGTTTTCAAAATTCGTCAACATCAATTTTATTCTTCTT
CCCCCCCTTAAGGAGAAGCGAGAGTAGGAAAGCGTTTTTTTTGTTCAGTA
CGATTCGTTTTGCTTGCAGCCGGTCAGCAATTTGCGGCCCCAGAGAAACA
AACCGCACCGGCTTGAATGCCTCCCAGGCACTTCGACTATTGTAGTCTGT
TTACACTCCACTGAGCGGTGCAAGCAAACCTCCAACTGCACGAAGCAGTT
GTGTTAAGGGCGCCCAGCTTGGTTCAATTATTATAGGGATAACTGGGAGG
GATTCTTTGGAGCTGGTGGACAGCGGCGATAACCGCTTGCTCCTGTACGC
TCCTGCTGTTGTGTCTGTGCCTCTTCTCAAGTAGAACAATATGCTTAACG
CTCAATGGCAAAAAGTACAGCGAAAGAAATAGCATACCCTGTGTGGCCTG
TCCTCGTGTGTGACCCCGGCTGATGCACCCAGAAAATACGCCGAAACGTG
TAAAGATTGGATGTCGAGATTGCATGGGACAAGGACCCACACACAGTTGA
TAGCCTTATGGAAGCACTCTCCGTGTTTCAGCCGCATGGAGACTGACGTC
TCTTCACTGGTCAGCCGGTTAGCTCGGTCGATGCTAATCAACGAAACACA
CACAAAATGAACCGCTGCCACTTGTTTCATTGTTCGGCCGGTTAGCGCGG
TCGATGCTAACTTAAGAAACGCACACACACACACCTCACGGGGTCCCAGT
TAATGGAATTTAGAAGTGTTTTGTGTTTTCAACCGCATAGACTGGCGTCT
TTTCATTGGTCAGCCGGTTAGCGCTGTCGATGCTAATAGTAAAAACACAC
ACGCACGCACGAAACTCTTCCGCATACTCCCGGTCTAGTCGGCGGCGACG
AAGCGTGGGCCGCTGCTTTCGAAGCCCTTTCGGCCGAAGGGCTAGTCAAG
ACGAGCTTGGATCTGGAGCAGAGATCCCTCGACGAGCGGCTTTTGGACGT
CCAAGAGACGTATGACTTTAGCGCCGGGAGCGGGTACCGCGAAGGGAAGC
CGGACGAGGACGAGGGGGCACGCAACCTGGATCAAGGAAAAGAGGGGGTG
AGAGAAGGAAGGCTCGCGTTTGGGTTTTTCCTGATGCTTGTTTTCCTCCT
TGGTTGTGTGGAGGAAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10552:1148..4369+

>mRNA_Ecto-sp9_F_contig10552.509.1 ID=mRNA_Ecto-sp9_F_contig10552.509.1|Name=mRNA_Ecto-sp9_F_contig10552.509.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2496bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10552:1148..4369+ (Ectocarpus species9 EcSCA_722f female)
ATGCTTCTGCACCGGAGGCAATGCGAGGTGCGAGTGTGCCAAGCTCGACA
TCTGGTCCCCAAGGGCAGGAAGAGGAATGGAGACGACAAGCCTGCTGTGC
TGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCGACGGCGAACACAAC
ACAACTGAGAGCTGCCGGAACATCGAACATCCTTTGTGGCAGCGGGTAGC
CGTCTTCGACCTCGACCTCTGCCGTGCTGCTGAGGGGATTGCAAGGGACG
CCCCAGCAAACCCTCCAAGAGACTCGAACCCCACAGCGGCGGCGGCGGCG
GCGGCGACGGCCGCCGCATCCTCTTCCTCCCGGAATTCAAGTGCAACTTT
TGAACGGCCGAGTACCGTTGCTGCAGCAGTACCGGCTAGGAAAAACAAGG
CAGCAGCAGCAGCAGCAACACCCGCCGCTGCTGCTGTCAAGCGATCGTCG
TCGTCATCCCTCAACCCTTTCGCGGTGGCCGAAGCCGAGACCCAGTCACT
GAACCCGTTCGCCTCCAACTTCGTGCCGCCGGCAGCTACGCCGCTGCCGC
CGCCACCCCCAGCAGCAGCATCCCCAAGATCTAAATCTTCTTGTCCGCCA
GCGGCGGTAGTAGCACCGGTTTTTCGGGCATCCTTGGTCTTGCATCTCCG
CGTGCTGCACGGCCGCCTTAGGTCGAAAGAAGTGCTGGGTGACGTAGCCG
TGGACTTGGTCCCGCTGCTTCGGTCAGGGGGCGACCGGCTGGCCACAGAC
CGCTTGGAGTGGTTGGAGGAAGAAGATGGCGCGCCGCTGCTGCCGCTGGG
TGATGGTGACGCCGGCGTGATTACTACTCCTCCTCCTCCTCCGCTTGTTG
CGGTTGACACCTGGGTGTCTCTGCAACAGGGCACCGCTGAGCTTCGGGTG
CAGATACTGATAAAAAACCCCAGGGAACCAGCGGGCAGCAACGTGGGAAA
TCAACGTGCACAAGATGCTTCTGCACCGGAGGCAATGCGAGGTGCGAGTG
TGCCAAGCTCGACATCTGGTCCCCAAGGGCAGGAAGAGGAATGGAGACGA
CAAGCCTGCTGTGCTGGTAGCAGACGCCGTCTGGGCGCTGATGAGCATCG
ACGGCGAACACAACACAACTGAGAGCTGCCGGAACATCGAACATCCTTTG
TGGCAGCGGGTAGCCGTCTTCGACCTCGACCTCTGCCGTGCTGCTGAGGG
GATTGCAAGGGACGCCCCAGCAAACCCTCCAAGAGACTCGAACCCCACAG
CGGCGGCGGCGGCGGCGGCGACGGCCGCCGCATCCTCTTCCTCCCGGAAT
TCAAGTGCAACTTTTGAACGGCCGAGTACCGTTGCTGCAGCAGTACCGGC
TAGGAAAAACAAGGCAGCAGCAGCAGCAGCAACACCCGCCGCTGCTGCTG
TCAAGCGATCGTCGTCGTCATCCCTCAACCCTTTCGCGGTGGCCGAAGCC
GAGACCCAGTCACTGAACCCGTTCGCCTCCAACTTCGTGCCGCCGGCAGC
TACGCCGCTGCCGCCGCCACCCCCAGCAGCAGCATCCCCAAGATCTAAAT
CTTCTTGTCCGCCAGCGGCGGTAGTAGCACCGGTTTTTCGGGCATCCTTG
GTCTTGCATCTCCGCGTGCTGCACGGCCGCCTTAGGTCGAAAGAAGTGCT
GGGTGACGTAGCCGTGGACTTGGTCCCGCTGCTTCGGTCAGGGGGCGACC
GGCTGGCCACAGACCGCTTGGAGTGGTTGGAGGAAGAAGATGGCGCGCCG
CTGCTGCCGCTGGGTGATGGTGACGCCGGCGTGATTACTACTCCTCCTCC
TCCTCCGCTTGTTGCGGTTGACACCTGGGTGTCTCTGCAACAGGGCACCG
CTGAGCTTCGGGTGCAGATACTGATAAAAAACCCCAGGGAACCAGCGGGC
AGCAACGTGGGAAATCAACGTGCACAAGTCGGCGGCGACGAAGCGTGGGC
CGCTGCTTTCGAAGCCCTTTCGGCCGAAGGGCTAGTCAAGACGAGCTTGG
ATCTGGAGCAGAGATCCCTCGACGAGCGGCTTTTGGACGTCCAAGAGACG
TATGACTTTAGCGCCGGGAGCGGGTACCGCGAAGGGAAGCCGGACGAGGA
CGAGGGGGCACGCAACCTGGATCAAGGAAAAGAGGGGGTGAGAGAAGGAA
GGCTCGCGTTTGGGTTTTTCCTGATGCTTGTTTTCCTCCTTGGTTGTGTG
GAGGAAGGCTAGTCGGCGGCGACGAAGCGTGGGCCGCTGCTTTCGAAGCC
CTTTCGGCCGAAGGGCTAGTCAAGACGAGCTTGGATCTGGAGCAGAGATC
CCTCGACGAGCGGCTTTTGGACGTCCAAGAGACGTATGACTTTAGCGCCG
GGAGCGGGTACCGCGAAGGGAAGCCGGACGAGGACGAGGGGGCACGCAAC
CTGGATCAAGGAAAAGAGGGGGTGAGAGAAGGAAGGCTCGCGTTTGGGTT
TTTCCTGATGCTTGTTTTCCTCCTTGGTTGTGTGGAGGAAGGCTAG
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