mRNA_Ecto-sp9_F_contig10549.505.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10549.505.1
Unique NamemRNA_Ecto-sp9_F_contig10549.505.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10549.505.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 1.110e-130
Identity = 332/355 (93.52%), Postives = 334/355 (94.08%), Query Frame = 1 
Query:    1 RLENRLSFSFLPGLSWPGHRQEAVPSTAVSAXXXXXXXXXXXXXXXXXXHGSADTVVIRRRNLAGLPPPVGKNASEAAEADAAATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQFLLSSKRYRSTKPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAAXXXXASPGPRGTWGRTAARLKARRCLVRAAGAVGGRRRGGAEEA*VARGAGV 1065
            RLENRLSFSFLPGLSWPGHRQEAVPSTAVSA  XXXXXXXXXX      HGSADTVVIRRRNLAGLPPPVGKNASEAAEA+AAATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXX    GAQFLLSSKRYRSTKPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAAXXXXASPGPRGTWGRTAARLKARRCLVRAAG+VGGRR GGAEEA V RGAGV
Sbjct:   76 RLENRLSFSFLPGLSWPGHRQEAVPSTAVSAAPXXXXXXXXXX------HGSADTVVIRRRNLAGLPPPVGKNASEAAEAEAAATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGSGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAXXXXXXXXXXXXXXXXXXXXXGAVGGAQFLLSSKRYRSTKPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAAXXXXASPGPRGTWGRTAARLKARRCLVRAAGSVGGRRGGGAEEAQVGRGAGV 424
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BLAST of mRNA_Ecto-sp9_F_contig10549.505.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 5.720e-84
Identity = 229/374 (61.23%), Postives = 233/374 (62.30%), Query Frame = 1 
Query:    1 RLENRLSFSFLPGLSWPGHRQEAVPSTAVSAXXXXXXXXXXXXXXXXXXHGSADTVVIRRRNLAGLPPPVGKNASEAAEADAA-----------------------------------------------------------------------ATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQFLLSSKRYRSTKPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAA 909
            RLENRLSFSFLPGLSWPGHRQEA+PSTA   XXXXXXXXXXXX       GSA+TVV+RRRNLAGLPPPVGKNASEAAEADA                                                                        ATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDG    XXXX                 XXXXXXXXXXXXXXXXXXXXXXX                                   XXXXXXXXXX   GAQFLLSSKRYRST+PRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAA
Sbjct:   76 RLENRLSFSFLPGLSWPGHRQEALPSTAAXXXXXXXXXXXXXX-------GSAETVVVRRRNLAGLPPPVGKNASEAAEADAXXXXXGSSSAASPSYVSPDSKRGKGAGQEDGNYSSTDDEAGAAGVIGLGGAPRDLVSSGLGSPEVLPSVLEQATVDVSSLQEADDNFLLQPTPQGLKSYCIIQRTRSTIRTYFRLFLQEQRPLAEDGSGGDXXXXNASPTTTTTSGPATGVPXXXXXXXXXXXXXXXXXXXXXXXAFSATGGSASGGVTHSGGGMETLRAFLAVGGGGGSXXXXXXXXXXAVGGAQFLLSSKRYRSTRPRSASYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAA 442
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10549.505.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Tub1.110e-13093.52domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Tub5.720e-8461.23domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10549contigEcto-sp9_F_contig10549:1043..3861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-14_001300.1
Hectar predicted targeting categoryother localisation
Exons5
Model size1097
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928270.7642426-UTR-Ecto-sp9_F_contig10549:1042..12911622928270.7642426-UTR-Ecto-sp9_F_contig10549:1042..1291Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 1043..1291 +
1692277815.3668265-UTR-Ecto-sp9_F_contig10549:1042..12911692277815.3668265-UTR-Ecto-sp9_F_contig10549:1042..1291Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 1043..1291 +
1622928270.77993-UTR-Ecto-sp9_F_contig10549:1815..19161622928270.77993-UTR-Ecto-sp9_F_contig10549:1815..1916Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 1816..1916 +
1692277815.3758655-UTR-Ecto-sp9_F_contig10549:1815..19161692277815.3758655-UTR-Ecto-sp9_F_contig10549:1815..1916Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 1816..1916 +
1622928270.7939854-UTR-Ecto-sp9_F_contig10549:2475..27341622928270.7939854-UTR-Ecto-sp9_F_contig10549:2475..2734Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 2476..2734 +
1692277815.3868155-UTR-Ecto-sp9_F_contig10549:2475..27341692277815.3868155-UTR-Ecto-sp9_F_contig10549:2475..2734Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 2476..2734 +
1622928270.9174743-UTR-Ecto-sp9_F_contig10549:3808..38611622928270.9174743-UTR-Ecto-sp9_F_contig10549:3808..3861Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 3809..3861 +
1692277815.4249556-UTR-Ecto-sp9_F_contig10549:3808..38611692277815.4249556-UTR-Ecto-sp9_F_contig10549:3808..3861Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10549 3809..3861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928270.8104415-CDS-Ecto-sp9_F_contig10549:2734..29171622928270.8104415-CDS-Ecto-sp9_F_contig10549:2734..2917Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 2735..2917 +
1692277815.398874-CDS-Ecto-sp9_F_contig10549:2734..29171692277815.398874-CDS-Ecto-sp9_F_contig10549:2734..2917Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 2735..2917 +
1622928270.895173-CDS-Ecto-sp9_F_contig10549:3432..35701622928270.895173-CDS-Ecto-sp9_F_contig10549:3432..3570Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 3433..3570 +
1692277815.4086015-CDS-Ecto-sp9_F_contig10549:3432..35701692277815.4086015-CDS-Ecto-sp9_F_contig10549:3432..3570Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 3433..3570 +
1622928270.9064887-CDS-Ecto-sp9_F_contig10549:3694..38081622928270.9064887-CDS-Ecto-sp9_F_contig10549:3694..3808Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 3695..3808 +
1692277815.417115-CDS-Ecto-sp9_F_contig10549:3694..38081692277815.417115-CDS-Ecto-sp9_F_contig10549:3694..3808Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10549 3695..3808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10549.505.1prot_Ecto-sp9_F_contig10549.505.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10549 2735..3808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10549.505.1

>prot_Ecto-sp9_F_contig10549.505.1 ID=prot_Ecto-sp9_F_contig10549.505.1|Name=mRNA_Ecto-sp9_F_contig10549.505.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=145bp
METLRAFLAVGGGGGGGGGGGGGAGGGGAVGGAQFLLSSKRYRSTKPRSA
SYVWSRNGVWKDKHALAKVATQPWGGKGKGEGTMTSPSLVGDHLRAATAA
AAAAASPGPRGTWGRTAARLKARRCLVRAAGAVGGRRRGGAEEA*
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mRNA from alignment at Ecto-sp9_F_contig10549:1043..3861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10549.505.1 ID=mRNA_Ecto-sp9_F_contig10549.505.1|Name=mRNA_Ecto-sp9_F_contig10549.505.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2819bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10549:1043..3861+ (Ectocarpus species9 EcSCA_722f female)
CGGCTGGAAAACCGACTCAGCTTTTCCTTTCTCCCGGGCCTATCCTGGCC
AGGACACCGACAAGAAGCGGTGCCATCGACCGCAGTTTCTGCAGCCGCAG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGGCCGCAGGGCAC
GGCAGCGCCGACACCGTTGTCATCCGGCGGCGCAACCTCGCGGGCCTGCC
CCCGCCCGTGGGAAAAAACGCCTCGGAGGCGGCGGAGGCGGACGCGGCGG
TGGCGGCAGCGGGGTCGTCGAGCGCGGCGTCTCCTTCCTACGTGTCCCCG
GACTCGAAGAGGGGCAGGGGGGCGGCGCAAGAGGACGGGAATTACTCGTC
CACGGACGATGAAGCCGGGGCGGCGGGTGTGATCGGCCTGGGCGGGGCGC
CGCGCGGTGAGAGGAAAAGAGAAGGGGGGGTGGGGGTGGGGGTGGGGGTG
AGTACGGGCGTTCGTCTGTTTTTCGCTTGCTCGGTCCTGTACGCGACAGA
GCTGGGTGGGGCACGGCATGGCTAGGAAAGGGGAATGGGGGGGTCACCTT
TTGATCACCTAGTCAATCCCTTTGGCGACAGGACACCGTTCCTAGCCCCA
CCCCAACCCTTCAGCAATCTCGTTATTTCTGCCGCATGTCTTGACGTGAC
CAAGTGCTTGCTATCTACTGCGGCGTGTTTCATTTGTCGTGTCGTGTCTT
GTCCGGGCGTGGTCAAGACCTGGTGAGCTCTGGTCTCGGATCTCCGGAAG
TCCTTCCTTCGGTGTTGGAGCAGGCCACGGTGGACGTGAGCTCCCTCCAA
GAGGCCGACGACAACTTCCTGCTTCAGCCCACCCCGCAGGGCTTGAAAAG
CTACTGCATCATCCAGAGGACAAGGTCGGTAGTTTTGTTTTTTCCTTCCG
TACACTACTCGTACACCGCTAGAAAGACCGCTGGTACAGCGCATGTACCA
GACAGCAGTGCTGGCTCGAGCGGCTAACAATCTTAAGACACCACCGACGC
TGAAATCCCGTTACCTTTCCACCCCCACCCCCATTTTAGTTCTGGCCTCG
AGGCTACCATCTTTAAACTCCGCCTAGATTTGGAGTGGTCGAAGGACCCC
GCGAAAACAGCCACTGCCTGTTTCGGGTTTCCATCTCAAACGGAAGCGAC
CACAACCCCCCCCCTGTTTGCAACCCATCCAAGTGCAAAACCCGCCCACG
TGCAATTCGTCGTCGGGCCATTACAGCCGATCCCGCGAAACAGAACCCTT
GTAAGTTTCGTTTGTTCTCTGGTACGGAGGCGACCCCTCCCCCCGCCCCG
AAACGCCACTTTTGCTACATCGTAGAGCTGCTGCTGTGTTCAAGACTCTT
GGTTCCGCTTTTTCTTACGGTTCTCCACCCCCGGCTTGTCACTGCCGTGC
TTTTACGTTCGCGACCTGTACATCCGAGGACAGGTCTACGATTCGGACGT
ACTTCAGGCTATTTCTCCAGGAGCAGCGGCCTCTGGCGGAGGACGGCGGT
GGCGGAGACGGCGGCGATGACTCCGCCTCCCCGACGACGACGAGCGGCCC
CGCAACTGGCGTTCCCGGCGGGCATGGGGGTACCCCCCCCACCACCAGCA
ACTCTACGGGGCTTGACGGCGGAAGCGGAGGCGGCGCGTTCAGTGCTACA
GGCGGTAGCGCAAGCGGGGGAGTTACGCACAGCGGCGGAGGAATGGAAAC
CCTTAGGGCGTTCCTTGCAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGAG
GCGGAGGCGGGGCGGGGGGGGGCGGGGCCGTGGGAGGGGCGCAATTTCTC
CTCTCGAGCAAGCGGTACAGGTCAACCAAGCCCCGGTCGGCGAGCTACGT
GTGGAGTAGGAACGGAGTGTGGAAGGTGTGTGTTTTTTGCGTTTCTTGGA
ATTGGCATCGGCCGACCGCGCTAACCGGCTGACCAAATGAAAAGGCGCCA
GTCGTGTTGCGGAGAAAGAATCTTGAAAATGGCGTGTTTATGTGCTTGTG
TTTTGTTCTCTTGGCCGTGTCGGACAGAAGTCCAACAATCATTCCGTGTG
TCCACCTCTCTCTCTCGACGGACCTCCGTTGCATCCGTGGATGGACGTTC
TCTGTGTGTTTGTTCTTTGGGCTGTTCGTCGAGTAGCTCGGGAGATGAGA
GTGCCGGGATGTGGGTACCCGCGTGGCGGCCTGTTGTCTGCTCTCGTTTC
ACCTGTAAACCACCCATGTACTGCCTGTCGTGCTAGTTGTCTCCCGCAAT
GCAAAGGCCCGGTGCCCCCCCCCCCCTTCCGGCTGCCTCCCCGACCCCGC
TCCGTCCATTGCAGCACAGCGCGACTGATTGAACGACATTTTTCTCAACT
CTCTACCCCCACCCCACCCCCCCCCCCCCCTTGCCTCCAGGATAAGCACG
CCTTGGCCAAGGTGGCAACTCAGCCGTGGGGCGGCAAGGGCAAGGGCGAG
GGTACAATGACCTCCCCGTCCCTCGTCGGTGACCACCTGCGAGCTGCTAC
CGCCGCCGCGGCCGCCGCCGCTTCGCCTGTGAGCCCTGTCCCCTTTTCCG
CCGTCCCCGCTCCCGCAACCGCGTTCCCTGCGTCCGCCGATGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTACCGGTATCTC
AGGGTCCCCGGGGGACGTGGGGTCGGACGGCAGCAAGGCTCAAAGCCCGG
CGTTGTCTGGTTCGAGCGGCGGGGGCAGTGGGGGGGCGGCGGCGGGGGGG
GGCAGAGGAGGCGTAAGTAGCGAGGGGAGCGGGTGTCGGAGGCCTGAAGG
GGTCGGCGGCAGCCCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10549:1043..3861+

>mRNA_Ecto-sp9_F_contig10549.505.1 ID=mRNA_Ecto-sp9_F_contig10549.505.1|Name=mRNA_Ecto-sp9_F_contig10549.505.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10549:1043..3861+ (Ectocarpus species9 EcSCA_722f female)
ATGGAAACCCTTAGGGCGTTCCTTGCAGTCGGCGGCGGCGGCGGCGGCGG
CGGCGGAGGCGGAGGCGGGGCGGGGGGGGGCGGGGCCGTGGGAGGGGCGC
AATTTCTCCTCTCGAGCAAGCGGTACAGGTCAACCAAGCCCCGGTCGGCG
AGCTACGTGTGGAGTAGGAACGGAGTGTGGAAGATGGAAACCCTTAGGGC
GTTCCTTGCAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGCG
GGGCGGGGGGGGGCGGGGCCGTGGGAGGGGCGCAATTTCTCCTCTCGAGC
AAGCGGTACAGGTCAACCAAGCCCCGGTCGGCGAGCTACGTGTGGAGTAG
GAACGGAGTGTGGAAGGATAAGCACGCCTTGGCCAAGGTGGCAACTCAGC
CGTGGGGCGGCAAGGGCAAGGGCGAGGGTACAATGACCTCCCCGTCCCTC
GTCGGTGACCACCTGCGAGCTGCTACCGCCGCCGCGGCCGCCGCCGCTTC
GCCTGATAAGCACGCCTTGGCCAAGGTGGCAACTCAGCCGTGGGGCGGCA
AGGGCAAGGGCGAGGGTACAATGACCTCCCCGTCCCTCGTCGGTGACCAC
CTGCGAGCTGCTACCGCCGCCGCGGCCGCCGCCGCTTCGCCTGGTCCCCG
GGGGACGTGGGGTCGGACGGCAGCAAGGCTCAAAGCCCGGCGTTGTCTGG
TTCGAGCGGCGGGGGCAGTGGGGGGGCGGCGGCGGGGGGGGGCAGAGGAG
GCGTAAGGTCCCCGGGGGACGTGGGGTCGGACGGCAGCAAGGCTCAAAGC
CCGGCGTTGTCTGGTTCGAGCGGCGGGGGCAGTGGGGGGGCGGCGGCGGG
GGGGGGCAGAGGAGGCGTAA
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