mRNA_Ecto-sp9_F_contig10546.504.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10546.504.1
Unique NamemRNA_Ecto-sp9_F_contig10546.504.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10546.504.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 6.380e-61
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    1 QVAQPLMRWFKTKSHLCRELEVQAIREFIEAEKEKTEEERIERLANDAAWMAALTAEATPPVSPXXXXXXXXXXXXEADRKEQVHAEEEQAQPTTRLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQA 393
            QVAQPLMRWF+TKSHLCRELEVQAIREFIEAEK KTEEER ERLANDAAWMAALTAEATPPVSPXXXXXXXXXXX EADRKEQVHAEEEQAQPT RLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQA
Sbjct:  140 QVAQPLMRWFRTKSHLCRELEVQAIREFIEAEKGKTEEERTERLANDAAWMAALTAEATPPVSPXXXXXXXXXXXSEADRKEQVHAEEEQAQPT-RLAGARARVKNVVSKARAKLAKVVGAGAAERSRSQA 269
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10546.504.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.380e-6196.18protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10546contigEcto-sp9_F_contig10546:3297..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 orthologEc-27_003860.2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003860.1
Exons2
Model size462
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10546.504.1prot_Ecto-sp9_F_contig10546.504.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10546 3297..4260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.6385193-CDS-Ecto-sp9_F_contig10546:3296..34821622928267.6385193-CDS-Ecto-sp9_F_contig10546:3296..3482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10546 3297..3482 -
1692277815.3389719-CDS-Ecto-sp9_F_contig10546:3296..34821692277815.3389719-CDS-Ecto-sp9_F_contig10546:3296..3482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10546 3297..3482 -
1622928270.6140935-CDS-Ecto-sp9_F_contig10546:4002..42601622928270.6140935-CDS-Ecto-sp9_F_contig10546:4002..4260Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10546 4003..4260 -
1692277815.3469937-CDS-Ecto-sp9_F_contig10546:4002..42601692277815.3469937-CDS-Ecto-sp9_F_contig10546:4002..4260Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10546 4003..4260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928270.628645-UTR-Ecto-sp9_F_contig10546:4260..42781622928270.628645-UTR-Ecto-sp9_F_contig10546:4260..4278Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10546 4261..4278 -
1692277815.3588586-UTR-Ecto-sp9_F_contig10546:4260..42781692277815.3588586-UTR-Ecto-sp9_F_contig10546:4260..4278Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10546 4261..4278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10546.504.1

>prot_Ecto-sp9_F_contig10546.504.1 ID=prot_Ecto-sp9_F_contig10546.504.1|Name=mRNA_Ecto-sp9_F_contig10546.504.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
MRWFKTKSHLCRELEVQAIREFIEAEKEKTEEERIERLANDAAWMAALTA
EATPPVSPPPPAPSSSCCSSEADRKEQVHAEEEQAQPTTRLAGARARVKN
VVSKARAKLAKVVGAGAAERSRSQAATRSAAAAAAAAAGAAADGSSA*
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mRNA from alignment at Ecto-sp9_F_contig10546:3297..4278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10546.504.1 ID=mRNA_Ecto-sp9_F_contig10546.504.1|Name=mRNA_Ecto-sp9_F_contig10546.504.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=982bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10546:3297..4278- (Ectocarpus species9 EcSCA_722f female)
CAGGTGGCGCAGCCCCTCATGCGATGGTTCAAGACCAAGAGCCACTTGTG
TAGAGAGCTGGAAGTGCAGGCGATTCGCGAGTTCATCGAGGCGGAGAAAG
AGAAGACGGAGGAGGAGCGGATAGAACGCCTAGCGAACGACGCGGCATGG
ATGGCAGCCTTGACAGCGGAGGCAACCCCGCCCGTGTCTCCCCCCCCTCC
TGCTCCGTCATCCTCCTGTTGTTCTTCGGAGGCAGATCGGAAGGAACAGG
TGCACGCCGAGGAAGAGCAAGCGCAGGTAAGTGCTTGCCTGACGGTTACG
CTTGCCCATGCGACGAGTTTAGAGGTCGCTCTGGTTGGAATTTGATTTGA
TTCCCACTGTGATTTGTGTGTGATTTGAGTGTAGACGTACGTACGCGCGT
CCCTCTCCATTTGTTTCCTTTCAGCAATGTCGTGTGGTTTGGCATGACGG
ATACAGATTAAGCTTCCTTGTATTCGCCTGCAGCGATCGGGCATATGAAT
ACGTGATGCTCATGTCGGTTTTGCGCGCCCCCAAGTGATGATGCACTCCC
ATGTACTTCGTTTCATGTCTCCCGCTCTCGTAGGTACTTATGCTCAGGCG
AGCAATCTGATTGCTCTGCTCTTCTTTTCCATTTTTATTTTTGTCGTGGA
TCGTCGTATTGGTTCATGTTCTTACAGCAGTGCCATGCGGTATGCATACA
ATTTCCTCACGTCAACTCTTCTCTCGCTGCCTCGTCTTTCTGGGTAAACT
CGGGCGTTGCTGTGTTTGCATCCGTCGTGTCGTCACTCAACGAAAGCCGA
CGACAAGGCTAGCGGGAGCCAGGGCGAGGGTGAAGAACGTGGTCTCCAAG
GCCAGGGCAAAGCTCGCCAAGGTGGTGGGAGCGGGTGCGGCCGAGAGATC
AAGGTCGCAGGCGGCGACGAGGTCGGCGGCGGCGGCGGCGGCGGCGGCGG
CCGGCGCGGCAGCGGACGGCTCGTCAGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10546:3297..4278-

>mRNA_Ecto-sp9_F_contig10546.504.1 ID=mRNA_Ecto-sp9_F_contig10546.504.1|Name=mRNA_Ecto-sp9_F_contig10546.504.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10546:3297..4278- (Ectocarpus species9 EcSCA_722f female)
ATGCGATGGTTCAAGACCAAGAGCCACTTGTGTAGAGAGCTGGAAGTGCA
GGCGATTCGCGAGTTCATCGAGGCGGAGAAAGAGAAGACGGAGGAGGAGC
GGATAGAACGCCTAGCGAACGACGCGGCATGGATGGCAGCCTTGACAGCG
GAGGCAACCCCGCCCGTGTCTCCCCCCCCTCCTGCTCCGTCATCCTCCTG
TTGTTCTTCGGAGGCAGATCGGAAGGAACAGGTGCACGCCGAGGAAGAGC
AAGCGCAGATGCGATGGTTCAAGACCAAGAGCCACTTGTGTAGAGAGCTG
GAAGTGCAGGCGATTCGCGAGTTCATCGAGGCGGAGAAAGAGAAGACGGA
GGAGGAGCGGATAGAACGCCTAGCGAACGACGCGGCATGGATGGCAGCCT
TGACAGCGGAGGCAACCCCGCCCGTGTCTCCCCCCCCTCCTGCTCCGTCA
TCCTCCTGTTGTTCTTCGGAGGCAGATCGGAAGGAACAGGTGCACGCCGA
GGAAGAGCAAGCGCAGCCGACGACAAGGCTAGCGGGAGCCAGGGCGAGGG
TGAAGAACGTGGTCTCCAAGGCCAGGGCAAAGCTCGCCAAGGTGGTGGGA
GCGGGTGCGGCCGAGAGATCAAGGTCGCAGGCGGCGACGAGGTCGGCGGC
GGCGGCGGCGGCGGCGGCGGCCGGCGCGGCAGCGGACGGCTCGTCAGCAT
GACCGACGACAAGGCTAGCGGGAGCCAGGGCGAGGGTGAAGAACGTGGTC
TCCAAGGCCAGGGCAAAGCTCGCCAAGGTGGTGGGAGCGGGTGCGGCCGA
GAGATCAAGGTCGCAGGCGGCGACGAGGTCGGCGGCGGCGGCGGCGGCGG
CGGCGGCCGGCGCGGCAGCGGACGGCTCGTCAGCATGA
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