mRNA_Ecto-sp9_F_contig1054.502.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1054.502.1
Unique NamemRNA_Ecto-sp9_F_contig1054.502.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1054.502.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1054contigEcto-sp9_F_contig1054:15305..23342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1054.502.1prot_Ecto-sp9_F_contig1054.502.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1054 15305..23229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.4993954-CDS-Ecto-sp9_F_contig1054:15304..153731622928267.4993954-CDS-Ecto-sp9_F_contig1054:15304..15373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1054 15305..15373 +
1692277815.28654-CDS-Ecto-sp9_F_contig1054:15304..153731692277815.28654-CDS-Ecto-sp9_F_contig1054:15304..15373Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1054 15305..15373 +
1622928267.511345-CDS-Ecto-sp9_F_contig1054:23115..232291622928267.511345-CDS-Ecto-sp9_F_contig1054:23115..23229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1054 23116..23229 +
1692277815.2938573-CDS-Ecto-sp9_F_contig1054:23115..232291692277815.2938573-CDS-Ecto-sp9_F_contig1054:23115..23229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1054 23116..23229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.5246918-UTR-Ecto-sp9_F_contig1054:23229..233421622928267.5246918-UTR-Ecto-sp9_F_contig1054:23229..23342Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1054 23230..23342 +
1692277815.3029106-UTR-Ecto-sp9_F_contig1054:23229..233421692277815.3029106-UTR-Ecto-sp9_F_contig1054:23229..23342Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1054 23230..23342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1054.502.1

>prot_Ecto-sp9_F_contig1054.502.1 ID=prot_Ecto-sp9_F_contig1054.502.1|Name=mRNA_Ecto-sp9_F_contig1054.502.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=61bp
ARARKASWDLTFVELSTLQKLDTVCVRCAGLTQAIGAGKRAGGGWRFPCA
EKPGERATLT*
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mRNA from alignment at Ecto-sp9_F_contig1054:15305..23342+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1054.502.1 ID=mRNA_Ecto-sp9_F_contig1054.502.1|Name=mRNA_Ecto-sp9_F_contig1054.502.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8038bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1054:15305..23342+ (Ectocarpus species9 EcSCA_722f female)
GCGAGGGCTCGAAAAGCCAGCTGGGACCTGACGTTCGTGGAACTGTCAAC
ACTCCAAAAACTTGATACGGTGGGTCAGGCTGCCGCAACGTGGCACGAGT
TTGTGACTGTTGTGACAGATGCCGCAACCAGCTGCCGCCATAAATACGCA
CGCTTGTCAAACTTTGACAGGTTGCAACGCGGGTGACAGAAACACATGGT
TTCTAGAGAGAGGCGACGGTCAACACTTCTGTCACAATAAACTGGCAAGA
CTTCAATCGCAAGACACTTTGAAATTGTTCTGTCACACGTTTGTGTACTC
GGGGCAGAAGCCACTTTCACTCGGTGAAGCTGGAAAACATATTGCAAAAA
CGACTGCCCCCCAAGGAGTTAACCACCCCCATGGCAGAAACATGGGAGAC
ATTTCGACTTATTCACACTCCCAGCGACACCAACACCGCGACGATCCCAG
CCACGACGCCCCCGATGGGGGACCAAGAGGAGCTCAGCGCCGCTCTATCC
GTGACATCGACAGCCCTGTCTCCGTCGGTGGGCGTTTCTGTGCCAGATGA
TTCGTCGAAAGGAGCCTCTGTGCCAGATTATGGATTCCCAAGCATAGACA
GCGACAAGCGTGTACAACAGGGTATTATTATCTGTTGATGGTGCCCGCGA
TAGACTCGGTTGAGCAAAGGACCGACCAGTGGCCGTCAGCAAAGCGAGAA
TGTGGCTATTATAGCTGTGTGCGTCGGATCAACACGGCTCGGGAGCGATT
TAAATACTTGAAGATGAAGGCCATGCCAAACGGTTTACGGCTCAGACAAC
GTAAATGATCACGCCATCCGTGGTAAACGTAGTGTGTAGCGTTGTCTGGT
ATGCGAAAGCTGTAGTAAGCAACAGCGCTGGCACAGAGTGTGTAGTAGTG
TCTGCCTCTGTTTGAAGCTCCGAGTACGCGGGTTCTACACACGGCACCGG
TTTGTTCTGTACCCGAGCCTCGCTCTACCGCGTTGTACAGAAGCGACTGA
TGACAAGGAAATTCGGCAAGTGACCGACAAGTAAGATGCCCTTGATACAA
AAACACACAGCAGATATGTCGCTGCGGTGGTTGTGTCACGATAAAAAAAA
ACGTTGATGATCTTTCAACACAGCTCTTTCAACTGTAAATAGTATTTTTT
GGACCACAATGACGGCCGATTCTCGATACCGTCATGTCCGCCGTGTTGTG
ACCGGGGACACATGACGCATTTGTTTTTCGCAAGACACAAATGCCCGGGG
CAGAAATAAAAGTTAAAGGGCAAACATCTTCTAGAAAACAAGAGTCTATC
CGGGCGAACAACGCCCCTACCCTTCCACTTGCAACGCCTTCCAGCGCGCA
ACAGAACCTCGCCGTACGATACACTACATCTCGCTATCCGACTGATCGAT
GACTTTGGGTATGACTGACCGATCTGTGGCACGCATTGCCGAATGCTCAA
GAAAGCGCGGGGTGGGGATCACTAGCTGCGGCACCAAAAAACGCGTTTCA
TGCAGTAGGATTGCAGCCGCCTGTTGGGCGAATCTGGCAACGAACGGCTG
AAAATGTTATTGTTGAACGTGAGCTCACTCGGTCAAGCGTGTATGGGACG
TGGGGGTTTCGATAAACTATAGATCCACCGTTCAAAACAACCGGGGCTAA
CGAGTGAGGGTAAATGCGGATTCCCGCGCGCGGGTAAAACTGGTAAGGGT
CTTTGGCTCTCAAGCTCTCACCATCCAAGGTGGTTGAGCTGCCACCGCCG
TCGTCAGTCATGTCGATGTTGTCGTCATCCGTGGTTCCGTCGTCGTCAAC
GGCAACTGCCAATGTGTTGGGCACATGGTGCGGTTGACGTCTTGTTTGGT
GAATCCAGCAATGAATGGGTGCAAATTGGTGGTGTCGCTATTGTTGAGCT
TGAGATGAAACATATATGCGCGTGCAGGAAGTGATTTCGACATGCCGTAG
ATCACCACTGGTGAAGAGGTTAGACTTTACCAAGCAGCTACCGATTCCCG
CTTGCAAGGAAAACTGGTAACTCCCAAGCTCTCACCACCGCTGGTAGCCG
AGCCGATGCTGCCGTCGTCAGTCATGCTTGTGGCAGCGCCGCCCGTGTCT
GCTGTTGATCGCAACGCAGAGGAGAAAGGAGACGGGGGAGGCAAGAACGA
AAGCAGGATTAACATGTCGACGTCAAATGCTGGTTGGTGAGCTGCATCGA
TGTATAGAAAAAACAGAAGGGCGCTAGGAGAATCCCGTCTTCCCGAAACA
TAGTCCCTCCTGCAGAACTGCCAACTGAACAACACCGAATGTGCCCATGG
TGAGCGTGCACGCCAGGCCCCATCTTGTTTTTTAAAGCAAAGAAATACCT
CAAGCAGCCATTCATTGGCATATTTGGACAAAAACCACAAACGCCCACAA
GTGACGATTTTGGGTCCGTTTGGCTGAGCGGTGGCACGTAAACCTTGTCT
GTAGCACGGAAAAAAAACAGTCACCATGTGAACTTGGATCACGAGATCAG
AAATTTAATGAATCAAGCAGGGAAAGAGGAGTAAACAACGGTTGGCATGA
GATCGCTGCAGTTGCAAGCTGGAGAGGATCCTGACAAACAGAATGAGGGC
CGAGGGGGCTTTGATATGCAACTAGTTTGTCACTGATGTGCCGTTTTGAT
TTCAGTAGGGCTGATAAAAGCGAGGGGAGGAGCACGGGGCGATTCCAAGT
GTTGATTTGACGTGTAGCTTCTAGGCCCTTTCTCACCTGCAGAGTAGCTC
GTGCCGCCCGACGAGGAGCCAACGCCGGTCGTGCCTGCTCGTAGGATTTC
ATTTTCCGGTCGATGACCATGCCAAGGAAAAACGAGATAAGGGAGGACAG
GACGAAAGCAGAATGGATACGGACAATTTCTCGTTGGCTAGCTTCGCCGT
ACCTTGTGCACAGCGGACATACGTTCCTTGGACAGGTGCATTTCCAGCAA
CCAACCAAACCGCAGGCCGAGACATCCCTGAACAGGTGTATCAAGAAACT
TGATGTATGCTCTGAACTATGAAATCGTCTGCACTCATCAAAATGATATT
CGTGCTCGTGCGATGTCCAGTGCAGTCCCGCTTTGATCGAGACAGCCATC
TCTGGTTTTTGGCAGCACCCTTCAACACTTGCTTGAAACGTTCATAACCG
ACCTAGAGAGACTTCAATCCTCCCACCCTTCCTGCGTTGGGGCCCGTAGG
CATCTAGATGGCCACACACTTCACCACGATAGCCGTCAATGTAGAGTACT
GTAGCATCGGTATTGAACCAAACAGCGATGCAATCTTCGTGAAGGTGGAT
ATCTACTGTTGTTCTCCTGATCCAAACAAGTTTTTCACTGGTGTGCCGGT
TTGAATTGAGCAATTGAAACGGCGCGCAGGGTTCTGTGTGTGGAGTCGGC
TGGTAGCTTCTAGGCCCTTTCTCACCTGCATAGTAGCTCGTGCCGCCCGA
CGAGGAGCCAACGCCGGTCGAGCCTGCTCGTAGGATTTCATTTTCCGGTC
GATGACCATGTCAAGGAAACACGAGACAAGGGAGGAAAGGACGAAAGCAG
AATGGATACGGACAATTTCTCGTTGGCAAGCTCCGCCGTACCTTGTGCAC
AGCGGACATACGTTGCTTGGACAGGTGCACATCCAGCAACCAACCAAACC
GCAGGCCGAGACATCCCTGAACAGGTGTATCAAGAAACTTTGATGTATAC
TATGAAATCGTCTGCACTCATCAAAATGGTACTTTGTGCTCGTTCGATAT
CCAATGCAGTCCCACTTTGATCGAGACAGCCCTCTCTGGTTTTTGGCAGC
ACCCTTCAACACTTGCTTGAAACGTTCATAACCGACCTAGAGAGACTTCA
ATGATCCCACCCCCCCTGTGTTGGGGCCCGTAGGCATCTAGATGGCCACA
CACTTCACCACGATAGCCGTCAGTGTAGAGTACAGTAGCATCGGTATTGA
ACCAAACCGCGATGCAATCTTCGTGAAGGTGGATATCTACTGTTGTTCTT
CTGATCCAAACAAGTTTTTCACTGATGTGCCGGTTTGATTTGAGCAATTC
AAGCTGAACGGCGCGCGGGGTTCTGTGTGTGGAGTCGGCTGGTAGCTTCT
AGGCCCTTTCTCACCTGCATAGTAGCTCGTGCCGCCCGACGAGGAGCCAC
CGCCGGTCGAGCCTGCTCGTAGGATTTCATTTTCCGGTCGATGACCATGT
CAAGGAAACACGAGACAAGGGAGGACAGGACGAAAGCAGAATGGATACGG
ACAATTTCTCGTTGGCAAGCTCCGCCGTACCTTGTGCACAGCGGACATAC
GTTGCTTGGACAGTTGCATTTGCAGCAACAAAATCAAACCTCGGGCCGAG
ATATCCATCTTGATCGAGACAGCCATCTCTGGTACTTGACAACACTTCAA
AACGTGCTTGAAAGGTTCAAAGCCGACCTAATACGATATGAACAATGCTC
CGCTCCTAGTGGGACACATAGATTCGTTGAGCAGCAAGAAGCATGTTGCG
TGACCACCTTCGAAGTTTTGTAGTTTTCTCATCTTGTTCACGGAAACTAG
AGGGCTTATTTTGCCGCCTCAAAAAAAGCTCAGCAAGATGACTTCCTTCT
GGTTCAACAGACGGACCACCAACCTATCTACCACCGAGGGGGAACTGTGT
ACGGGAAAAACGTCAGTGAAGGTTTGAGGTCCATAATCAACGACTCAATC
ACAAGTTACTAGTCAGCCTGTGTTGACCGGCCGGCCCCAAAAAGTCACTT
ATTTATTTGCAGAACACAAGCCGAGCAGGAGCAGATAAAACTAAACAGCA
GTCTACGTTGGTCTGAGCAAATTCTGCGCTGAGTAGGTGAACATCAACAG
CCTGGTCCATTGCCTGATATGCAATCTGATCAGGAAACCTACGGTTCGCT
GAAGTTAGTCAGGTGACTAGCGCTCAGTACCTGAACCAGACTACAGCAGA
CTTTAACGAAAAATGCGGCGAGATTGGGCGAGACTGAGTATTTGAAACCG
TCGAAAACGCGGCGGGATTGGGAGATTTGTTTAGTAGCGCGCAACCGCGC
ACACTCAGTTCCATACACGTCAAGAGACGCGCACAAGAGTTGTTGCGCCC
ATCTTTAAGTGTGGATTCTTGAAGGGTTGCAAGCACCCAGAAGATACCGG
CGGAAACCACAACTGTTGCGAGAAATGTGAGGTCGAGATGCACCTTCGTT
GCGTGCAATCCTTTTGGGCCACAGCGGACGTTGCGAGCAACCCAGATGTT
AGGCTGTGTGGCATCAGCCACTGCCACACACAGCAGTTGCAAGAATATTA
GAAGTAGCTGCTGCTGGGTCTGCTGTGGCAAGTGGGTCGGCCAGTCGATG
TGCTGTAGCAACCGGCGAAGCTTTGTCGGCCCGTCCAGCAACGACGAATG
CTGAATCTAAGGGCACGGCGCGCGCGCCCGCCAGCACACACTTGCGGTCC
AAGGATCATACCGAGGGTGGGCCGGCTACAGCGGCGGAAAAAAGAACCAC
CGCCATTCTCTCAGCAGAAGTGGCAAGATTTTCACTACGGAAAGCGCAGC
GAAGGAAGCAGGGAAGAGTTGGTGCGGCTTTGCGGGTGTGGAAAAAACTT
GGGGGACGGCTCGGGGGTGAACGCCGACGAGCCAGAGGGGCATGACGAAT
CGGAACAGTACACATCGTGAGTCGCGCGCGCAAGAGGATTGGAAATCGAT
TCGTGCTTGCTGTTACTCGATGTACTAGGGTTGGCGTTCTCCATCAAAGA
GCACCGTCAAATGGGGAGTTGTCGCAAGCCGTCGTCGAACACACTGGCAT
GCTTGAGTATTCTTCGTAACAATGCCGTACCCATACTTGCTTACCTGTGA
TTAAAACAGATTGGCGCAAGAGTTTCAACCGTGGATTAGAAAAATAGCAA
CGAGAAACGGCAGCAACAATTGGATCTGCACGTGTGGGCAAGACTTTGGC
GCGGCGAAAGAATAGAGCGACCACCAGGTCGATTTGAACTTAAGTTCAAG
GAGGCACAAGTGAGTCACTTGTGGAACACACTTCGGTAGTCCGTCACGCC
AATGTGTACGATAGACACTGACCTAGAATATACTCGAAGGTGCACCTTTG
CTTCCTGCTAGAAATCTAATACGCTTTGCCGGGTTCAACGTTCCCTGTAC
GCAAACACTGTACGCAAACACTACAGCAAGAACACGGCAAAGACAACCAG
CGTGACTGGGGGGGTGGTGGGGTAGTTCTGGACGCCCCGCCCGTCTTCCG
AAGGGCGACATTTCGATCACCTCGGCGGGGCATTCTGTACAGCGGACGAA
GGTTGCTTGCATAGTTCCATTTCCCGGAAACAATCAAAATGCAAGCTGAG
ACATCCACCCACAAGCACGCGAAGAAGTCTTCAAACCAACTCTCAACAAA
TTGAACGTACATCTGCATACAAGTAGGTTCACAGAAACAGCCCAAACTGT
TTTCCACAGCGGAACTTCGCGCCGTTTTTGAGAGATAGCTTCTAGAATTT
CGCACGTATAGCCCTCTCACTCATACGAACAAACTAGCAGAGGGGTCGAT
TGGATTTGCGGTGTTTTTCACCGGATTTTCGGGGTCCTCGTGATTTCCTA
CACAAAGATGTGCTCCTTGAAACCTGGACATCAGGCACAAAATGAAAAAA
TCAAGTTGACCCGTTTTCTGGTTTTCTTGTACGGTCTCATGGATATATGT
GTGTAATGTTTCAGAGGCTTACTCCTGAAACGGCATGAAGGTTGGCCCAA
ACGCGCGCTTGAAGTGTTGAAATGTCCGCGGCCACCCCTTGTTACTTGAT
TAAAGTGTAGAATCGCCCTTCTGAGGCGAAATTTTAACCGTCAAGGATCC
AGCTATTTCAGTTTTGCGAGTGAAGCAAACTCGGTACACGTGATGCTTGG
TATAAACAACAACGCTTTGATTACTTCTTTCAAATTTTCAGGCATTCTAG
GACAGGTTTCTTGGGGTGTCCATTTCGGGACCCCCGAAAGTCGTGAAAGA
GCCGACTCCCTCAGAAGGATCCCCGATGAAGAGTTTGTGTTTTGACTTGG
AGCGCAAATTCCAATCACTCCGCCAAGTTACAGGAATATCATAACGTTTC
ACGTCAGTTACCAGGAAAACCAAACGACACACTCTCGTTCAAGGGGGGCT
GGTATCTTGCGTATCACCGTTGGTCCCGCAACGCCGGGATGCTACGTTTT
CGGGACATACATCGATCTCATTGGAACCGTTTTCGTTCTTTTTATTTCGT
CAGGTCCCCGAACCTATTTCGGTTACTGTAGTTTGAGCCAGGTCGAGAGT
CAGGCATTCATGCTGGAAATTCGTATCGTACACGCTAGAGCGTCATGAGC
GCATCTGATCGGCCAAGACGCGTTTCGCCCGAAGCACCACCCTCAAGGGT
CAACTAGGAGAAAAAAAATGTCACCCTGTTGTGTTGTTCGTGAGGAACTC
TACAATTTCACTTTTTATGAATATCGAGGAAGTTTGCGTCTGGGACAAGC
TGTGGAATAAATTTGGGGTCATTTCCGTGAATCAGCTTGTACCAACAAAT
GGCATCGTGCTCTTTCAAATCCAACCCATTTCCCGTCTTGATCGAGGCAG
CCATCTCTGGTCTTCGACAGCACCCCTCGATGCTTGACGATAAGGTTCAG
GGCTGACCTTGCAGAATTTGGAGAGTTCGCCGATTCGTGCTTCTGAGCCC
AAGGCACTCAAACACTAAAATGGCCGTCGATATGGTGACGTCGTTTTTGA
ACTTGAGCTCGATGCTGTGTTCGTGAGTGACGATCGACTCTTGTTCTTAC
ATTTCCGACAGGTTTGTGTTCGATGCGCCGGTTTGACTCAAGCAATCGGA
GCTGGAAAGCGAGCGGGGGGGGGTTGGCGATTCCCATGTGCGGAGAAACC
TGGTGAACGGGCAACCCTCACCTGAATAGCTCGGGACAACACTTGCCGAG
GAGCTCCTCGACGTTCCTGCTCGTAGGGATATGTTTTAAGTTCAACGACC
ATGCAGAGGAGAAACGAAGAAGGAATGGATAAAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1054:15305..23342+

>mRNA_Ecto-sp9_F_contig1054.502.1 ID=mRNA_Ecto-sp9_F_contig1054.502.1|Name=mRNA_Ecto-sp9_F_contig1054.502.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1054:15305..23342+ (Ectocarpus species9 EcSCA_722f female)
GCGAGGGCTCGAAAAGCCAGCTGGGACCTGACGTTCGTGGAACTGTCAAC
ACTCCAAAAACTTGATACGGCGAGGGCTCGAAAAGCCAGCTGGGACCTGA
CGTTCGTGGAACTGTCAACACTCCAAAAACTTGATACGGTTTGTGTTCGA
TGCGCCGGTTTGACTCAAGCAATCGGAGCTGGAAAGCGAGCGGGGGGGGG
TTGGCGATTCCCATGTGCGGAGAAACCTGGTGAACGGGCAACCCTCACCT
GAGTTTGTGTTCGATGCGCCGGTTTGACTCAAGCAATCGGAGCTGGAAAG
CGAGCGGGGGGGGGTTGGCGATTCCCATGTGCGGAGAAACCTGGTGAACG
GGCAACCCTCACCTGA
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