mRNA_Ecto-sp9_F_contig10537.500.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10537.500.1
Unique NamemRNA_Ecto-sp9_F_contig10537.500.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10537.500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI96_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 4.260e-79
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:  427 QASRSFLTKTDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGCRPSTAPEVSLRVKPQQTRPRSRLRRAVSSTSSVNRTGCLKGSVGADAGLYMEEEEERAAAVNAVR 822
            QASRSFLTKTDAI+FLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNG RPST PE SLRVKPQQTRPRSRLRRAVSSTSSVN TGCLKGSVGADAGLYMEEEEERAAAVNAVR
Sbjct:   22 QASRSFLTKTDAIIFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTGPEASLRVKPQQTRPRSRLRRAVSSTSSVNGTGCLKGSVGADAGLYMEEEEERAAAVNAVR 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10537.500.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.260e-7996.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10537contigEcto-sp9_F_contig10537:569..4405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size822
Cds size690
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.1316283-UTR-Ecto-sp9_F_contig10537:568..7001622928267.1316283-UTR-Ecto-sp9_F_contig10537:568..700Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10537 569..700 +
1692277815.1419847-UTR-Ecto-sp9_F_contig10537:568..7001692277815.1419847-UTR-Ecto-sp9_F_contig10537:568..700Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10537 569..700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928267.147341-CDS-Ecto-sp9_F_contig10537:700..7481622928267.147341-CDS-Ecto-sp9_F_contig10537:700..748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 701..748 +
1692277815.1504197-CDS-Ecto-sp9_F_contig10537:700..7481692277815.1504197-CDS-Ecto-sp9_F_contig10537:700..748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 701..748 +
1622928267.1637208-CDS-Ecto-sp9_F_contig10537:878..10181622928267.1637208-CDS-Ecto-sp9_F_contig10537:878..1018Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 879..1018 +
1692277815.159782-CDS-Ecto-sp9_F_contig10537:878..10181692277815.159782-CDS-Ecto-sp9_F_contig10537:878..1018Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 879..1018 +
1622928267.1809213-CDS-Ecto-sp9_F_contig10537:2191..23001622928267.1809213-CDS-Ecto-sp9_F_contig10537:2191..2300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 2192..2300 +
1692277815.1702697-CDS-Ecto-sp9_F_contig10537:2191..23001692277815.1702697-CDS-Ecto-sp9_F_contig10537:2191..2300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 2192..2300 +
1622928267.1987119-CDS-Ecto-sp9_F_contig10537:2721..28171622928267.1987119-CDS-Ecto-sp9_F_contig10537:2721..2817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 2722..2817 +
1692277815.177672-CDS-Ecto-sp9_F_contig10537:2721..28171692277815.177672-CDS-Ecto-sp9_F_contig10537:2721..2817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 2722..2817 +
1622928267.213811-CDS-Ecto-sp9_F_contig10537:3569..36661622928267.213811-CDS-Ecto-sp9_F_contig10537:3569..3666Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 3570..3666 +
1692277815.185345-CDS-Ecto-sp9_F_contig10537:3569..36661692277815.185345-CDS-Ecto-sp9_F_contig10537:3569..3666Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 3570..3666 +
1622928267.2292154-CDS-Ecto-sp9_F_contig10537:4205..44051622928267.2292154-CDS-Ecto-sp9_F_contig10537:4205..4405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 4206..4405 +
1692277815.1927965-CDS-Ecto-sp9_F_contig10537:4205..44051692277815.1927965-CDS-Ecto-sp9_F_contig10537:4205..4405Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10537 4206..4405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10537.500.1prot_Ecto-sp9_F_contig10537.500.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10537 701..4405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10537.500.1

>prot_Ecto-sp9_F_contig10537.500.1 ID=prot_Ecto-sp9_F_contig10537.500.1|Name=mRNA_Ecto-sp9_F_contig10537.500.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=230bp
MIASRHRPSSSFRSSSDRFRDLASCRKGRCRREENDYRDLGPGKYDGSSM
MELQQSRPKTRGSLLGGSGGHRSAVPRAEVNWYPGRKDYPNLGPGVYHQA
SRSFLTKTDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHL
GPGSYDLPPTLNNGCRPSTAPEVSLRVKPQQTRPRSRLRRAVSSTSSVNR
TGCLKGSVGADAGLYMEEEEERAAAVNAVR
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mRNA from alignment at Ecto-sp9_F_contig10537:569..4405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10537.500.1 ID=mRNA_Ecto-sp9_F_contig10537.500.1|Name=mRNA_Ecto-sp9_F_contig10537.500.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3837bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10537:569..4405+ (Ectocarpus species9 EcSCA_722f female)
TTCATTGTTGTGTCTCGAGGCCCATGCATCCCTTGTCGAGGACCGGACCC
CACCACGCCGAACTAGGTTGAGGGGCGAGATCCAGGGAATAGTACGGCGT
GGCCTTCAAGCTAGGCGAACGTGTCCTTCAACATGATTGCCTCCCGTCAC
AGGCCTTCGTCCTCGTTCCGCTCCTCCTCGGTATGTATTGTATGTAAAAG
GCTCTGTTTCTGTAGAGCTTGTTTTTCCTTCTCACGAAGAGCACAACAAA
CAAACACGCTGCCGTCGTATGTAAAGAAGTCGGTGTGCTGCGCCTGCTGC
TCGCACGCAGGATCGTTTTCGTGACTTGGCGTCATGCCGCAAGGGCCGCT
GCAGACGGGAAGAGAACGACTACCGAGACCTGGGTCCGGGCAAATACGAC
GGGTCGTCGATGATGGAGCTGCAACAGTCCCGCCCGAAGACCAGGGGAAG
GTTGACCACAAACAACACGAACTGCTTTGTGAATAACATGTCTTCAATTC
TGACAACAAATGGTCTTCGCGGCGAACGGTCGTGCAGTCCAGGAATCCGC
AATAAACCTTGAAGCAAAGCCATCGACATATAATGTATGTTCGGTTGGTG
TCCCTCAGTGTTGGAATGTGCCCGTCATGTTCACCGTGTCGTTATACCAA
GCACCCGGCACAACTGCATTCAGAATTTTCTTCAGAGAATTTTCGATGAG
CCTACAGTACACTATCGAGGGACCCCCATCGTACGCCGTCTTAAGCGACC
AACTTCTACTTTGTAGTTAGTCTATGTGCTGTTGTCGTGATGTTCAAATC
TGTCGCAAGCACGCATCTATCAACCGTCAACGGTTAACAGAAACCACACC
AGACGCCGGATGTTTGATGTTTTCTGATCGACAAGAAAAACTATGCAATA
GGGCCTCCTCTTTCGCACATTTTGAGGCGAACGGATTGCTGCGGTCACAT
AGATTTGGTCGATGTATGAAATGTACGAAGCGTTTCAAAAGCGCAAAGGA
CACAGGGTAAACCCTGCTTAATACTCGACTCAGCTGCGTAAAGCAGCGTG
AAACTTGGCAAGCTGATTGGTCGAAGCCTACTTTTGACACGTTCACTGGC
TACTTTTCTCCGGCACTTTAGGCTATATGTTACCCGAATTTCGGGACAGT
ACCTTGACTTGGCGGGAGATGGAGCCCGTCCAAGGGTCAGTTTTCCGAAG
GAATCTCTTTCCGCTCCCACTAGGGGCCACCAGAGCATGAACCCCCCTCC
TGTCACCGGCAGAACACACGCGCCATGATTGACAAACCCTCCCCCGGCAG
CGACATGCCGAGCTGAATACATTGAGAATTTCGACCAACACAAACACGCC
ACGGACAAGCATTTCAACTCAAAATACAAGCAGACCTACTCGTTTGCCCA
TTCTCGCCCTTGTCTCCTTAGATCTCCCGTCCAAAAAGACAGCTTACGGA
GTAGTCTACTGACTGTAGGGCTTGCAGCACGTGAAGCAGTGGAGCAGTTA
TGCAAAGGCGTCTCGCCGGTGGGACGCTTACCTTATGTTGAAAAACATAG
ACACCAACACCACGTAGATTCAACGGCATGGAGGCTAAGCTCGCCCATCA
CACGCCCTACACCCCACAACAAGCCTTCTAGGGGGCAGTGGGGGTCACCG
CTCCGCAGTTCCGCGGGCAGAAGTCAACTGGTACCCAGGCCGGAAAGACT
ACCCCAACTTGGGACCGGGAGTATACCATCAGGCAAGTCGCTGTCCTGAG
TTCTCCTGATCTCGGCGCCTCAACTAATACGGGTTTTCTATACGTTCGTC
GGGTGGTCGAGACGTGAATAGGCAGCGTTTAGATACCTTCCCCAGCCTGC
CCCTTACGAGCTTCAGAACAGCATTCTAGTCGTCGGGTGAGGAGGGCTCA
TCCACATCACCCCCGGTTTATATATATTTCGGCTAACTGTTCGTGTTGGG
AGCGTAGAAGCTGATTCCACCTTCGGGGAGAAAATTTCCACCTAGAAGAA
ACAGCAACGTAGGCGTCAACAGCAGCAATTAGAAAGCACCAGTGTGGATT
CTTCGATAAAGACAACGCGAAGCACGCGCGCACGAGGTGTTCTATATTTC
AGTGCGGATCCCATGGTGGGGGGCAGATTCTAATGGTTCCCTTTGCACGG
CAGGCGTCACGCTCGTTCTTGACCAAGACCGACGCGATCATGTTCCTCCC
GGGGAGTAGACGAGGCTTCCACTCCTTCCTCAACAGCGGGAGATCGAAGG
TACGGTGTAGGTATCCGACGGGGGGGCTTCGCGGACAGTAGTAATGTTCG
TCATGCCATTGTCGTGCCTTGCGCCACGGAAGGACGAAGTTCTGTCGGAC
ATCAACGCGCAGCGCGGACCCTTGGACATTACCTCTCGCTCTCGAGGGAT
ACACAAATGCAGGGACGAGAAAATATAGTGTGTCACGCGTGGGAAGGCTA
TGGATGGCAGAGAAATTCTCCAAGTTCGAACTGAGACAAGAAGTGTGCGG
TACGCAAGAGGCTACCCGCTGTGTAGTTCTTTCAAGCCGGCGACGGAAAC
ATTCAGAACTCTGTATTTCCAAGTTTCAGGCATTGTCGGAAGGCGTCACG
AGGCCTGGCAAAGGGACAGCAAACCCGCTGTTTCAATAGAAATATTCTAT
CGTACGGTAACTCTCTCCTTGTTAACAGGGAAGTAGCCAAGCGAATTAAG
CGACAGGTGTAAAGCCTTTCCACTTTGACACGTCTCTCTCTTCTTACGAA
CGTGTAGTCCGGCTTTCAAGGGACTGGTAGAAGACGAGCAGGCTGCGCGG
CAGCTCCTCCGTGCACAAGGTTCCACCGAGGGTCCGGGGTCCGCTGCCCA
ACACAACCACAACTTTTCTCGTTCGGTTGGCACTCTGCTGTGGGAGTTGA
TAAACTTCCGTGTAAATTACGGCCAAAGTCTAGCAGGTAGCCCCCGCGTT
CTGAGTTGTTGCTTATCTTAGATGCTTACGTGTACCCCTGTGTCTGAGCA
GAGGCTGATGGGAGACGCTGTTCTGTTTAAAACAGCTAGAGCTGACGGCG
AGCATCTCGGGCCAGGATCGTATGACCTACCTCCCACCCTCAATAATGGT
GAGGAAGCGAGCTACGTCCCCGGCACAGAGTAGCGGGCCGTAACGCTTGT
ACTTGTGCATCAGGGGACATCGGCAATACCGATGGCCACTACTTCTGTTC
TTCACCCCAGCTCTTATTTTCCGAGTAGGGCTATGCATGCCACTTCGGTA
ATAGCATGACAAGCACAAATATTCATTGGGACAGGTATGGCACGCCCTGC
CAAGCCGGTTGGAACACTCGTTTCACGACTTTCCGGCTGTTTGCTCGATG
TGGTGAACGTTGGTTTTGCGGGACACTAACGTTTCGTGTAGCAGGCGCCG
CTCTATTGTTGATCAACCTTGGCAGACTTGAACGACGTCCTGCGCAGTCA
CTTGTTTAAGGCTCGCAGCTGTGTTCCTCACTGACTATTTAGATCATGCT
GGATCTTTGTCTGGTTAGCACTATTTTTGCTTCAACTGTAGGGTATTAAT
GCCAGATTTACGCATTTTGAATTGTTTGCTGTCGCTGTCTTCCCCGTCTT
CGCCTCTGCACCGCAACCATATTTTCTTTATGGGTAGGCTGTAGGCCCAG
CACAGCCCCGGAAGTAAGCTTGCGGGTCAAGCCCCAACAAACCCGTCCCC
GTTCCCGACTTCGGCGTGCTGTTAGTTCAACGAGCTCTGTCAATAGGACA
GGATGTTTGAAAGGGAGTGTTGGGGCGGACGCGGGGTTGTACATGGAGGA
AGAGGAGGAACGTGCGGCGGCCGTCAATGCCGTCCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10537:569..4405+

>mRNA_Ecto-sp9_F_contig10537.500.1 ID=mRNA_Ecto-sp9_F_contig10537.500.1|Name=mRNA_Ecto-sp9_F_contig10537.500.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10537:569..4405+ (Ectocarpus species9 EcSCA_722f female)
ATGATTGCCTCCCGTCACAGGCCTTCGTCCTCGTTCCGCTCCTCCTCGAT
GATTGCCTCCCGTCACAGGCCTTCGTCCTCGTTCCGCTCCTCCTCGGATC
GTTTTCGTGACTTGGCGTCATGCCGCAAGGGCCGCTGCAGACGGGAAGAG
AACGACTACCGAGACCTGGGTCCGGGCAAATACGACGGGTCGTCGATGAT
GGAGCTGCAACAGTCCCGCCCGAAGACCAGGGGAAGGATCGTTTTCGTGA
CTTGGCGTCATGCCGCAAGGGCCGCTGCAGACGGGAAGAGAACGACTACC
GAGACCTGGGTCCGGGCAAATACGACGGGTCGTCGATGATGGAGCTGCAA
CAGTCCCGCCCGAAGACCAGGGGAAGCCTTCTAGGGGGCAGTGGGGGTCA
CCGCTCCGCAGTTCCGCGGGCAGAAGTCAACTGGTACCCAGGCCGGAAAG
ACTACCCCAACTTGGGACCGGGAGTATACCATCAGCCTTCTAGGGGGCAG
TGGGGGTCACCGCTCCGCAGTTCCGCGGGCAGAAGTCAACTGGTACCCAG
GCCGGAAAGACTACCCCAACTTGGGACCGGGAGTATACCATCAGGCGTCA
CGCTCGTTCTTGACCAAGACCGACGCGATCATGTTCCTCCCGGGGAGTAG
ACGAGGCTTCCACTCCTTCCTCAACAGCGGGAGATCGAAGGCGTCACGCT
CGTTCTTGACCAAGACCGACGCGATCATGTTCCTCCCGGGGAGTAGACGA
GGCTTCCACTCCTTCCTCAACAGCGGGAGATCGAAGAGGCTGATGGGAGA
CGCTGTTCTGTTTAAAACAGCTAGAGCTGACGGCGAGCATCTCGGGCCAG
GATCGTATGACCTACCTCCCACCCTCAATAATGAGGCTGATGGGAGACGC
TGTTCTGTTTAAAACAGCTAGAGCTGACGGCGAGCATCTCGGGCCAGGAT
CGTATGACCTACCTCCCACCCTCAATAATGGCTGTAGGCCCAGCACAGCC
CCGGAAGTAAGCTTGCGGGTCAAGCCCCAACAAACCCGTCCCCGTTCCCG
ACTTCGGCGTGCTGTTAGTTCAACGAGCTCTGTCAATAGGACAGGATGTT
TGAAAGGGAGTGTTGGGGCGGACGCGGGGTTGTACATGGAGGAAGAGGAG
GAACGTGCGGCGGCCGTCAATGCCGTCCGAGCTGTAGGCCCAGCACAGCC
CCGGAAGTAAGCTTGCGGGTCAAGCCCCAACAAACCCGTCCCCGTTCCCG
ACTTCGGCGTGCTGTTAGTTCAACGAGCTCTGTCAATAGGACAGGATGTT
TGAAAGGGAGTGTTGGGGCGGACGCGGGGTTGTACATGGAGGAAGAGGAG
GAACGTGCGGCGGCCGTCAATGCCGTCCGA
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