mRNA_Ecto-sp9_F_contig10532.498.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU0_ECTSI) HSP 1 Score: 346 bits (888), Expect = 4.730e-118 Identity = 155/159 (97.48%), Postives = 158/159 (99.37%), Query Frame = 1
Query: 103 MSTVGEEQQPAEEAPNTSIGVPSFELAAAPQVEGEGEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 579
MSTVGEEQQPAEEAPNTSIGVPSFE AAAPQ++GEGEGAHHIRYISVVAERHSGSRWFTGFLRE+FRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE
Sbjct: 1 MSTVGEEQQPAEEAPNTSIGVPSFEHAAAPQIKGEGEGAHHIRYISVVAERHSGSRWFTGFLREYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 159
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT9_ECTSI) HSP 1 Score: 281 bits (718), Expect = 3.460e-92 Identity = 121/133 (90.98%), Postives = 126/133 (94.74%), Query Frame = 1
Query: 181 AAAPQVEGEGEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 579
AAAPQ++GEG+ AHHIRYISVV+ERHSG W T FL E+FRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWI GMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE
Sbjct: 30 AAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 162
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA1_ECTSI) HSP 1 Score: 257 bits (657), Expect = 5.320e-84 Identity = 110/135 (81.48%), Postives = 120/135 (88.89%), Query Frame = 1
Query: 181 AAAPQVEG--EGEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 579
AAAPQ+EG EGEG HHI+YIS++AERHSGS W TGFL +FR DV VTPTLCTWKHWFQDRIHQD+QDGKRPCR +QQCPACLDTEHTLVV MWRNPYDWISGM SNPHHAKAHRGVQDL ++MTMPWIM P+
Sbjct: 9 AAAPQIEGGGEGEGPHHIKYISLIAERHSGSTWMTGFLSRYFRHSDVKVTPTLCTWKHWFQDRIHQDIQDGKRPCREHQQCPACLDTEHTLVVAMWRNPYDWISGMQSNPHHAKAHRGVQDLSEYMTMPWIMQPK 143
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB15_ECTSI) HSP 1 Score: 207 bits (528), Expect = 3.040e-65 Identity = 84/124 (67.74%), Postives = 98/124 (79.03%), Query Frame = 1
Query: 208 GEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 579
G G I+YIS++ ERHSG+ W FL+++FRDKD+ VT TLCTWKHWFQDRI+QD+ DGKRPCR QQCPAC D HTLVV MWRNPYDWISGMH P HA+AH + D+ +FMTMPWIMG E
Sbjct: 4 GVGPLEIKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIHDGKRPCREGQQCPACKDINHTLVVAMWRNPYDWISGMHKIPWHAQAHASIPDMSKFMTMPWIMGAE 127
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE9_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.120e-61 Identity = 83/124 (66.94%), Postives = 98/124 (79.03%), Query Frame = 1
Query: 208 GEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE 579
G G I+YIS++ ERHSG+ W FL+++FRDKD+ VT TLCTWKHWFQDRI+QD+QDGKR CR QQCPAC D HTLVV MWRNPYDW+SGMH P HA+AH + D+ +FMTMPWIMG E
Sbjct: 94 GVGPLKIKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIQDGKRLCREGQQCPACKDINHTLVVAMWRNPYDWVSGMHKIPWHAQAHASIPDMSKFMTMPWIMGAE 217
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6T5_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.160e-15 Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 226 IRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIM 570
+ IS++ ER++G+ W T L + F + + L WKHWFQD D + +R + TLV+ M+RNPY+W+ M PHH+ +H ++ + F+T PW M
Sbjct: 56 VMEISLLGERNTGTNWVTALLSKCF--PGIKTSARLVRWKHWFQD---DDSNENER--------------QKTLVIAMFRNPYEWVMAMRKTPHHSPSHLRLK-WQNFVTKPWTM 150
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K9R8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.600e-14 Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 226 IRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPW 564
I I+++ ER++GSRW T LR+ F ++ VTP+L WKHWFQ+ Q V D HTLVV++ N YDWI M PH+ H ++D +F+T PW
Sbjct: 256 ITRIALLGERNTGSRWVTKKLRQCF--PEIKVTPSLHRWKHWFQEDQSQ-VHD------------------HTLVVLVSINVYDWIDAMQRVPHNMPMHM-MEDWYEFLTTPW 346
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCP8_9CHLO) HSP 1 Score: 76.6 bits (187), Expect = 2.020e-13 Identity = 42/122 (34.43%), Postives = 58/122 (47.54%), Query Frame = 1
Query: 217 AHHIRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHS------NPHHAKAHRGVQDLEQFMTMPW 564
+ HIR ISV+ ERHSG+ + L + ++ C +KH+FQ +G+++CP D TLVVV+ RNPYDW+ GMH N K + E FMT W
Sbjct: 62 SRHIRRISVIGERHSGTTFVKRLLESNLARPETPISDWFCDFKHYFQ-------------VQGDRRCP---DLNSTLVVVVLRNPYDWVLGMHKQCWCRRNAAEEKLYMQGVSFETFMTRVW 167
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9S4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.430e-12 Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 226 IRYISVVAERHSGSRWFTGFLREFFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAH-RGVQDLEQFMTMPW 564
IR IS+V ER+SG+ W T +++ F D ++ V +KH FQ H +V E TLV+V+ RNPY+WI M PHHA +H R + ++F+ PW
Sbjct: 95 IRKISIVGERNSGTTWMTSHMQDCFND-NIWVDNHFTRYKHHFQFD-HPEVVP-----------------ESTLVLVIHRNPYEWILSMRKRPHHAPSHIRKENEWQEFLETPW 189
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQL9_THAPS) HSP 1 Score: 71.6 bits (174), Expect = 3.710e-11 Identity = 48/171 (28.07%), Postives = 72/171 (42.11%), Query Frame = 1
Query: 136 EEAPNTSIGVPSFELA------AAPQVEGEGEGAHHIRYISVVAERHSGSRWFTGFLREFFRDKDVM----------------------VTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPW 564
E+AP + + +E + AAP G A + I+++ ERHSG+ W T L + F D + V + +KHWFQ + VQD + T+V+ M+R+PYDW++ MH PHHA H + F+T PW
Sbjct: 501 EQAPFVANAMDEYEASDEETEVAAPS-NANGGKATGVTSITLIGERHSGTNWITDHLNDCFGDDLISDGDSPGESTHIGLSFLQNLISKVKVSYARFKHWFQFD-YTAVQD-----------------KSTVVIAMFRDPYDWVAAMHERPHHAHKHMNLH-WRDFVTRPW 651 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10532.498.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10532.498.1 >prot_Ecto-sp9_F_contig10532.498.1 ID=prot_Ecto-sp9_F_contig10532.498.1|Name=mRNA_Ecto-sp9_F_contig10532.498.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp MVNLVSRSIVAVLLALCGSASPRDAKVTVAAAIIMSTVGEEQQPAEEAPNback to top mRNA from alignment at Ecto-sp9_F_contig10532:2211..4201+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10532.498.1 ID=mRNA_Ecto-sp9_F_contig10532.498.1|Name=mRNA_Ecto-sp9_F_contig10532.498.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1991bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10532:2211..4201+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10532:2211..4201+ >mRNA_Ecto-sp9_F_contig10532.498.1 ID=mRNA_Ecto-sp9_F_contig10532.498.1|Name=mRNA_Ecto-sp9_F_contig10532.498.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10532:2211..4201+ (Ectocarpus species9 EcSCA_722f female)back to top |