mRNA_Ecto-sp9_F_contig1053.497.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1053.497.1
Unique NamemRNA_Ecto-sp9_F_contig1053.497.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1053.497.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.110e-33
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 3 
Query:   21 LSRPSGKKRPVGTRTCQYDGGCSRRPSFNHPGRKAIFCSAHRQLNMVDVAHKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGQIDRKRRKSA 302
            +SRP GKKRPVGTRTCQYDGGCSRRPSFNHPGRKAIFCSAHRQLNMVDVAHKARXXXXXXXXXXXXXXXXXXXXXXXXXXX EGQIDRKRRKSA
Sbjct:  189 ISRPLGKKRPVGTRTCQYDGGCSRRPSFNHPGRKAIFCSAHRQLNMVDVAHKARXXXXXXXXXXXXXXXXXXXXXXXXXXXLEGQIDRKRRKSA 282
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1053.497.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.110e-3396.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1053contigEcto-sp9_F_contig1053:21126..22764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928266.3750954-CDS-Ecto-sp9_F_contig1053:21127..212481622928266.3750954-CDS-Ecto-sp9_F_contig1053:21127..21248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1053 21128..21248 -
1692277814.8506112-CDS-Ecto-sp9_F_contig1053:21127..212481692277814.8506112-CDS-Ecto-sp9_F_contig1053:21127..21248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1053 21128..21248 -
1622928266.3900526-CDS-Ecto-sp9_F_contig1053:22567..227641622928266.3900526-CDS-Ecto-sp9_F_contig1053:22567..22764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1053 22568..22764 -
1692277814.87016-CDS-Ecto-sp9_F_contig1053:22567..227641692277814.87016-CDS-Ecto-sp9_F_contig1053:22567..22764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1053 22568..22764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1053.497.1prot_Ecto-sp9_F_contig1053.497.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1053 21128..22764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1053.497.1

>prot_Ecto-sp9_F_contig1053.497.1 ID=prot_Ecto-sp9_F_contig1053.497.1|Name=mRNA_Ecto-sp9_F_contig1053.497.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
SRSCSGASRGLRGRSGPSAPEPANTTGGAVGGRASTTRVGRRSSARRTGS
STWSTWRTRRAVSTRRVAPSTLGTATPGRDRRTVRGTGSKDRSTGSAGSP
PSRRLR
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mRNA from alignment at Ecto-sp9_F_contig1053:21126..22764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1053.497.1 ID=mRNA_Ecto-sp9_F_contig1053.497.1|Name=mRNA_Ecto-sp9_F_contig1053.497.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1639bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1053:21126..22764- (Ectocarpus species9 EcSCA_722f female)
AGCAGGAGCTGCAGTGGGGCCTCTCGCGGCCTTCGGGGAAGAAGCGGCCC
GTCGGCACCCGAACCTGCCAATACGACGGGGGGTGCAGTCGGCGGCCGAG
CTTCAACCACCCGGGTAGGAAGGCGATCTTCTGCTCGGCGCACCGGCAGC
TCAACATGGTCGACGTGGCGCACAAGGCGCGCTGTCAGCACCCGCAGGTG
ATTGATTGGTTTCTTCGCCCATATTGGAGTTCTGGACGTTCTGTCCACCT
TCTACGTCGGAGTGCATACCATAGACGACACAAGATAACACACCCCGGTG
ATATCATTTTGGGCTTTTAAAAATAGTATCACCGGGTGTGGTATCCTGTG
GGGTGTGTGGTACCTTATTTAGCCCGGGTGATAAAAGTGCAGCTTGGAGG
GGACCCTAAGGGTGTGTGATAAACCAGGGGGTGTGATAGCACGCCCGAAC
ACCCACAGGGCGTCTTTGGGGGGGTGATAATGAGGGGTTGTGATGACACT
GCTTGTAGAGTTGAACCGCTGCTGCCGCACGCTTAAAGGGGTGTGGCTGC
TGCTGGTGAGGCGATGCGGTGGCTGTCTTGTTGGTGCCTGTTGCTGTGCC
AGCTGCTGCTGCTGTTAGATCAGCAGCAGCAGGAGGACGAGCCGTGGCAG
GAGCGCTTGCGTAGAAGAAGTCTGCTCGCTCGCGTTGAAAGAATGACGTG
ATCTGTGGCGCTTGTACTGCTGCGGTCGAAGCAGTTGTGGAAGAAGCGGA
GGTACTTGCGGCGGTATTCTGCTCTCCCTGCACGTTCATGTTGTTGGAGG
TCTCCTTCGGGGTGTTTCGCCGCACGCAGATGTTGCGTGTGTGTGCGATG
CCCACGGGGCAGATCCTGTATCACCCCGGTGATAGAAGGAGGGTCCCCGT
GAATGTATGCGGTGTGTTACTTATGTAGCTCGGGTGATATGTGTCGATGG
TTTGTCAGAAACGCCCAAAATTATCACCCGGGTGTCGTATTCTGTGGGGG
GTGTGGTATGTGGGTGTGTTATCTTGTGTCGTCTACGGTACACAGTTGAG
GTTCCTATTTAGAGCCGGTTGAATACTGCCGGTGCCCGGTATAGTGCCGG
TGTTTTCGGCGGGCACGCGCTGAATCTCCACGTCATTCTCAACACTTTGA
ATAGTGCTGGTCCGGTATAGTGCCAGCGAATTTTCTGGGCACATGCTGGC
ACTACACAGGGACCTCTACTGCTGTATTGGTTGTGTGGCCAGCTCTTTTC
TTACAGTAATATGAGGTCGTTTATGCAAAAACCGAGCGGATTCGCCCTAG
AAACACTAAACAGACAAGATCGCAGCTCATGCTCCTGGCGGTACAGTTCG
TCCCCTGCACCAACTTCACGTATGCTGTAAATCATTTGCCCCATTTTGTG
CGTAGCACAGAGATTTTATCCCCCCCCCCGCGTCCCAACTATTCCGAATA
TCAAAACAACCTCTCACGGCGCCGGTTTGTCTTCCTACGAACGTGTGCGC
ATTTATAAAAAGACAGGGTTGCACCAAGCACCCTGGGTACGGCTACCCCG
GGAAGAGACCGACGCACTGTGCGGGGCACCGGCTCGAAGGACAGATCGAC
AGGAAGCGCCGGAAGTCCGCCCTCGCGCCGCCTCCGCCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1053:21126..22764-

>mRNA_Ecto-sp9_F_contig1053.497.1 ID=mRNA_Ecto-sp9_F_contig1053.497.1|Name=mRNA_Ecto-sp9_F_contig1053.497.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1053:21126..22764- (Ectocarpus species9 EcSCA_722f female)
AGCAGGAGCTGCAGTGGGGCCTCTCGCGGCCTTCGGGGAAGAAGCGGCCC
GTCGGCACCCGAACCTGCCAATACGACGGGGGGTGCAGTCGGCGGCCGAG
CTTCAACCACCCGGGTAGGAAGGCGATCTTCTGCTCGGCGCACCGGCAGC
TCAACATGGTCGACGTGGCGCACAAGGCGCGCTGTCAGCACCCGCAGAGC
AGGAGCTGCAGTGGGGCCTCTCGCGGCCTTCGGGGAAGAAGCGGCCCGTC
GGCACCCGAACCTGCCAATACGACGGGGGGTGCAGTCGGCGGCCGAGCTT
CAACCACCCGGGTAGGAAGGCGATCTTCTGCTCGGCGCACCGGCAGCTCA
ACATGGTCGACGTGGCGCACAAGGCGCGCTGTCAGCACCCGCAGGGTTGC
ACCAAGCACCCTGGGTACGGCTACCCCGGGAAGAGACCGACGCACTGTGC
GGGGCACCGGCTCGAAGGACAGATCGACAGGAAGCGCCGGAAGTCCGCCC
TCGCGCCGCCTCCGCGGTTGCACCAAGCACCCTGGGTACGGCTACCCCGG
GAAGAGACCGACGCACTGTGCGGGGCACCGGCTCGAAGGACAGATCGACA
GGAAGCGCCGGAAGTCCGCCCTCGCGCCGCCTCCGC
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