mRNA_Ecto-sp9_F_contig1053.495.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI4_ECTSI) HSP 1 Score: 402 bits (1032), Expect = 7.410e-140 Identity = 209/217 (96.31%), Postives = 211/217 (97.24%), Query Frame = 1
Query: 1 MSLRMGSNRGSVRANALDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALP 651
MSLRMGSNRGSVRANALDKRVPRNPRYAGVKSK VQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQ DQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVR+PEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADA HAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEG+VEALP
Sbjct: 1 MSLRMGSNRGSVRANALDKRVPRNPRYAGVKSK----VQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQ-DQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRSPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADAGHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGDVEALP 212
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI4_9PHAE) HSP 1 Score: 367 bits (941), Expect = 3.390e-124 Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 1
Query: 124 MTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPPXXXXXXXXXGTLRIGCGGGLRSTALSD 735
MTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQ DQQEGV DFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPPXXXXXXXXX TLR G GGGLRSTA+SD
Sbjct: 1 MTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQ-DQQEGVHDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPPXXXXXXXXXXTLRTGGGGGLRSTAVSD 203
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB11_9STRA) HSP 1 Score: 219 bits (559), Expect = 1.990e-67 Identity = 113/195 (57.95%), Postives = 148/195 (75.90%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEG 633
+++R+P NPRYA V+S+ + TG+TVDKV +VT ++ LRRR+EPY+R+TP QL +LLSEYEQ D QEGVQD DPD HGP VV Y +A+ +YDRPYL+LD+RTPEE+ R+ QARSF +LNQDRMT EL+ +KNREG L++LY +++ AC AA+TL+HRGFDN++VLSGGL AF F+EG
Sbjct: 1 MERRIPENPRYAHVRSR----LDTGLTVDKVKYVTAKEFLRRRDEPYYRVTPGQLFDLLSEYEQ-DLQEGVQDMASKQDPDSHGPVVVTYTEEAEAAYDRPYLILDLRTPEEYTVHRVAQARSFPIVMLNQDRMTAELFKFKNREGTLIVLYEDEERLACQAAQTLLHRGFDNVYVLSGGLQAFTHL-HPDFIEG 189
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7G5_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.620e-54 Identity = 105/227 (46.26%), Postives = 148/227 (65.20%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPPXXXXXXXXXGTLRIGCGGGLRSTAL 729
LDK+VPRNP+Y V+S+ + TGMTVDKV +++T ++L+RR E +FRL+ +QL+ L +EYE + D ++ GP+VV E D KPSY RPYL+LD+RT +E+ +C I+QARSF ++LNQD+M +LY YKN+EG L++LY +++A + A TL+ RGFDNIF+L+GGL F+ E +VEG PP G+ R G G G RS L
Sbjct: 12 LDKKVPRNPKYDDVRSR----IDTGMTVDKVKYISTSEYLKRRNELFFRLSSNQLHALFAEYEADHE-----DVEENKGGGFDGPRVVTIEADEKPSYQRPYLLLDLRTQQEYTQCHIMQARSFPMQMLNQDKMIADLYQYKNKEGQLIVLYCDNEAISSQAGHTLVTRGFDNIFLLTGGLFTFS-ELHPLYVEGT----PPERPRNDNSRGSNRSGSGRGGRSGRL 224
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P2P0_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.720e-39 Identity = 92/219 (42.01%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQ---DQQEGVQDF-----------RDHIDPDHH---GPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPP 654
++KR+P+NPRY +SK + +G TV+KV ++ ++ L+RR+E + R+T L +L EYE Q E V R +D D+ GP++V YE + K YD PYLVLD RT +EF RI +A+++ A LN+D + PE++ +KN+E LVILY DD A A TL+ RGFDNI+VL+GGLV +A E F +EG LPP
Sbjct: 13 MEKRIPQNPRYKNTQSK----IDSGSTVNKVRLISHKEFLKRRDETFRRITCRCLADLFGEYEDTGSASQPEMVARMVKGADGEFSMERVPVDEDNQESCGPRIVSYEAEEKEDYDPPYLVLDTRTKDEFAANRIHRAKNYPATFLNRDVLLPEMHQFKNQEAKLVILYDLDDKTAAQTAHTLVQRGFDNIYVLTGGLVDYADE-FPDHIEGT--PLPP 224
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6U1_9STRA) HSP 1 Score: 145 bits (366), Expect = 3.220e-38 Identity = 88/227 (38.77%), Postives = 127/227 (55.95%), Query Frame = 1
Query: 10 RMGSNRGSVRANALDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQ-------------------QEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEG 633
RM + + ++KR+P+NPRY +SK V +G TV+KV ++ ++ L+RR+E + R+T L EL +EYE E V D+ + GP++V Y+ + K YD PYLVLD RT EE+ RI +A+SF A LN+D + PE++ +KN E L+I+Y DD A A L+ RGFDN++VLSGGLV +A E F +EG
Sbjct: 28 RMHRAKAKTPLSIMEKRIPQNPRYKNTQSK----VDSGSTVNKVRLISHKEFLKRRDETFRRVTCRCLAELFNEYEDTGSASRPEMVARMVKGANGEFTMERVPASEDNNSEESCGPRIVSYDAEEKEDYDPPYLVLDTRTKEEYAANRIHRAKSFPASYLNRDVLLPEMHQFKNNEAKLIIIYDQDDKTAGQTAHILVQRGFDNVYVLSGGLVDYADE-FPDHIEG 249
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAV7_PYTIN) HSP 1 Score: 141 bits (356), Expect = 5.050e-37 Identity = 84/217 (38.71%), Postives = 127/217 (58.53%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQD-----------------QQEGVQDFR-----DHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEG 633
++K++P NP+YA +SK + +G TV+KV ++ ++ L+RR+E + R+T L LL+EYE +++G + + D+ + GP+VV Y+ + + YD PYL+LD R EEF RI +A+SF A LN+D + PE+Y +KN+E L+ILY D+ A TL+ RGFDNI+VL+GGLV FA E F +EG
Sbjct: 13 MEKKIPVNPKYANTQSK----IDSGTTVNKVRLISHKEFLKRRDETFRRVTVKCLEALLAEYEDNGGCGXGCEEPEMVARMVKKEDGKFELQRVPADDNQSHNASGPRVVSYDAEEREEYDPPYLILDTRPKEEFAVNRITRAKSFPAAFLNRDTLLPEMYKFKNQESKLIILYDQDEKTVTQTAHTLVQRGFDNIYVLTGGLVDFADE-FPDRIEG 224
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=D0N5T1_PHYIT) HSP 1 Score: 140 bits (353), Expect = 1.250e-36 Identity = 88/219 (40.18%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQ---DQQEGVQ--------DF---RDHIDPDHH---GPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALPP 654
++KR+P+NP+Y +SK + +G TV+KV ++ ++ L+RR+E + R+T L EL +EYE Q E V DF R + D+ GP++V YE D K YD PYLVLD R+ EEF RI +A+++ LN+D + PE++ +KN++ L+I+Y DD A TL+ RGFDNI+VL+GGL+ FA E + +EG LPP
Sbjct: 13 MEKRIPQNPKYKNTQSK----IDSGTTVNKVRLISHKEFLKRRDETFRRITCRCLAELFNEYEDTGGASQPEMVARMVKGPNGDFTMERVPVGEDNQESCGPRIVSYEADEKEDYDAPYLVLDTRSKEEFAANRIHRAKNYPTTFLNRDVLLPEMHQFKNQDSKLIIIYDLDDKTVAQTAHTLVQRGFDNIYVLTGGLLDFADE-YPEHIEGT--PLPP 224
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Rhodanese (domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CRZ4_9STRA) HSP 1 Score: 142 bits (359), Expect = 7.410e-36 Identity = 86/204 (42.16%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQ---DQQEGVQDF-----------RDHIDPDHH---GPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFARE 609
++KR+P+NPRY +SK + +G TV+KV ++ ++ L+RR+E + R+T L +L EYE Q E V R +D D+ GP++V YE + K YD PYLVLD RT +EF RI +A+++ A LN+D + PE++ +KN+E LVILY DD A A TL+ RGFDNI+VL+GGLV +A E
Sbjct: 302 MEKRIPQNPRYKNTQSK----IDSGSTVNKVRLISHKEFLKRRDETFRRITCRCLADLFGEYEDTGSASQPEMVARMVKGADGEFSMERVPVDEDNQESCGPRIVSYEAEEKEDYDPPYLVLDTRTKDEFAANRIHRAKNYPATFLNRDVLLPEMHQFKNQEAKLVILYDLDDKTAAQTAHTLVQRGFDNIYVLTGGLVDYADE 501
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL5_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.730e-35 Identity = 73/201 (36.32%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 49 LDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVTTRQHLRRREEPYFRLTPSQLNELLSEYEQQDQQEGVQDFRDHIDPDHHGPKVVEYEPDAKPSYDRPYLVLDVRTPEEFKRCRIVQARSFEAKLLNQDRMTPELYMYKNREGGLVILYSNDDADACHAARTLIHRGFDNIFVLSGGLVAFAREGFQSFVEGNVEALP 651
+++RVP+N +Y+ ++ + TG+TV+KV F+T R++ +RR+E ++R+ +QL ELL+EYE V ++ + ++ K+V Y A P Y++PYL+LDVR + F I+QARSF ++L +D+M E+Y +KN+ L+I+ +D+ + +A+ ++ RG DN+++L+GG+ FA E + F+EG A P
Sbjct: 13 MERRVPKNDKYSHIRG----TLDTGLTVEKVKFITAREYSKRRDEIFYRINKNQLFELLNEYE-------VDEYESIAETTNNSLKIVSYSETAGPVYEKPYLILDVRELDYFNEYHILQARSFPYQMLRRDQMHSEVYRFKNKPETLIIICCDDEKISHESAKVMVDRGVDNVYLLTGGIHEFAYE-YPQFIEGRPPAPP 201 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1053.495.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1053.495.1 >prot_Ecto-sp9_F_contig1053.495.1 ID=prot_Ecto-sp9_F_contig1053.495.1|Name=mRNA_Ecto-sp9_F_contig1053.495.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=257bp MSLRMGSNRGSVRANALDKRVPRNPRYAGVKSKASTAVQTGMTVDKVTFVback to top mRNA from alignment at Ecto-sp9_F_contig1053:12362..14920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1053.495.1 ID=mRNA_Ecto-sp9_F_contig1053.495.1|Name=mRNA_Ecto-sp9_F_contig1053.495.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2559bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1053:12362..14920- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1053:12362..14920- >mRNA_Ecto-sp9_F_contig1053.495.1 ID=mRNA_Ecto-sp9_F_contig1053.495.1|Name=mRNA_Ecto-sp9_F_contig1053.495.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1542bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1053:12362..14920- (Ectocarpus species9 EcSCA_722f female)back to top |