mRNA_Ecto-sp9_F_contig10525.492.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10525.492.1
Unique NamemRNA_Ecto-sp9_F_contig10525.492.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10525.492.1 vs.
Match: Acyltransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.650e-52
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:    2 ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQIIPTKK 247
            ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQ+IPTKK
Sbjct:    2 ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQMIPTKK 83
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BLAST of mRNA_Ecto-sp9_F_contig10525.492.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU3_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 4.150e-47
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2 
Query:    2 ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVVGLYLVCQIIPTKK 247
            ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALV+ LYLVCQ+IPTKK
Sbjct:  419 ITTAAREGKKKISPYMPQEGAAGMAYHGLCVFLVTLTVNYLVIPFQLLGLTESLDVWGTFSFGIHALVIALYLVCQVIPTKK 500
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10525.492.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Acyltransferase1.650e-5298.78n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized4.150e-4796.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10525contigEcto-sp9_F_contig10525:2687..4208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928266.256277-CDS-Ecto-sp9_F_contig10525:2687..28001622928266.256277-CDS-Ecto-sp9_F_contig10525:2687..2800Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10525 2688..2800 -
1692277814.8043067-CDS-Ecto-sp9_F_contig10525:2687..28001692277814.8043067-CDS-Ecto-sp9_F_contig10525:2687..2800Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10525 2688..2800 -
1622928266.2776952-CDS-Ecto-sp9_F_contig10525:4069..42081622928266.2776952-CDS-Ecto-sp9_F_contig10525:4069..4208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10525 4070..4208 -
1692277814.8117683-CDS-Ecto-sp9_F_contig10525:4069..42081692277814.8117683-CDS-Ecto-sp9_F_contig10525:4069..4208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10525 4070..4208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10525.492.1prot_Ecto-sp9_F_contig10525.492.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10525 2688..4208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10525.492.1

>prot_Ecto-sp9_F_contig10525.492.1 ID=prot_Ecto-sp9_F_contig10525.492.1|Name=mRNA_Ecto-sp9_F_contig10525.492.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
DHHRGARGQEEDQPVHASGRGCGHGVSRVVRLLGHPDGELSRYPLPVAWS
DGVAGRVGHLLLRDPRPRRWALLGLPNHPDEKGT
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mRNA from alignment at Ecto-sp9_F_contig10525:2687..4208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10525.492.1 ID=mRNA_Ecto-sp9_F_contig10525.492.1|Name=mRNA_Ecto-sp9_F_contig10525.492.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10525:2687..4208- (Ectocarpus species9 EcSCA_722f female)
GATCACCACCGCGGCGCGCGAGGGCAAGAAGAAGATCAGCCCGTACATGC
CTCAGGAAGGGGCTGCGGGCATGGCGTATCACGGGTTGTGCGTCTTCTTG
GTCACCCTGACGGTGAACTATCTCGTTATCCCCTTCCAGGTGTGTGTGTG
TGTGTGTTTCTTTTTTCGTGACGCCATGCGGTCCATTTTATTTTTGTATG
AATTTTTCAGGGTAGGGTAGCCCGTAACCACGAGAATCCACCGCGTCAAG
TGTTAGATCAGCACAGAGAGGAGGTGCTGAATAGAGAGATCGGAACGGTT
TTTAATGTGAAGACGACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAATAACAACAATAACAACATATGGAAGAGGAC
GACGCACGTGGTTGCGCTCTTTCCTGTTGCGGAGGGCTTAATTCTGAAGG
GGAAAAACAAGTCAAAACTCTCGCATGTTCCCCATGGAAAATTGATGGTG
CTTCCATTGCCTCCGCGTGTGTGCAATTCACGTCGTGGAACGCAACCGGT
GTGGAAGGAACGGTTGTTGAAATTTGTTGGCAAGGAGGTACAGAACGAAC
CACCCGTTCCTACAGATGGTAGGACGAGAGATGCCTTGGAGGGGCCGTGG
AAGTGTCTCTGGAAGGAACACGTCGCGGCAGCAATTACTGATACAGCAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAA
CCTATTTTTGTAGCGTACATGTACTCGGTCTACCTGTGATGTGGCTGCTG
CCTTTGGCTGGAACCTTTAACCTTCGTTACGAACCACCAAAGACGAAACA
ACCGTTGTCGTTGGCCCTCGGTTTGCAGTGCACAACTTGGCGAGTGATTA
ATGAACGGCGCTTATCCCAAAGGTGCTTGCGGCGCGTTTCTGTTTCCCGT
CTGCTCGAGTTCATCACATTTTGAGTGCGGATCAGTGACCTCTTTTGCCG
CCTTCTGCGTGCCCCCCTCTACGGTCGCTCAGCGTCAGGGCGGTCTTACT
GCCCTGCTGTCCGACAAAACTCATGTACATACTCCTCAAGTAGGTATCAG
CTGTTTTCCTGATTTGAGCAGAGCCGCATAGAGGGTGTGGCACAAACTGG
CATGGCATACGCCCCCCCGGTCACCCATGCGCCGCCTAATGTGGATGGTG
GCGTTGTCTGTGGTCGATGTCGCTTCTTTTCCTCCCCCCGGCAGTTGCTT
GGCCAATGGTCTAACGACTACGGCATGGACGACAATGAGTACAACCCCCC
CCCCCCCGCCGTCAGTTGCTTGGTCTGACGAAATCGCTGGACGCGTGGAC
TGATGCCTGATGCCGCTTTTTTTTTGCTTGCCTTTCCCTGTGTGATGCCC
CCCGACAGTTGCTTGGTCTGACGGAGTCGCTGGACGTGTGGGGCACCTTC
TCCTTCGGGATCCACGCCCTCGTCGTTGGGCTTTACTTGGTCTGCCAAAT
CATCCCGACGAAAAAGGTACAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10525:2687..4208-

>mRNA_Ecto-sp9_F_contig10525.492.1 ID=mRNA_Ecto-sp9_F_contig10525.492.1|Name=mRNA_Ecto-sp9_F_contig10525.492.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10525:2687..4208- (Ectocarpus species9 EcSCA_722f female)
GATCACCACCGCGGCGCGCGAGGGCAAGAAGAAGATCAGCCCGTACATGC
CTCAGGAAGGGGCTGCGGGCATGGCGTATCACGGGTTGTGCGTCTTCTTG
GTCACCCTGACGGTGAACTATCTCGTTATCCCCTTCCAGGATCACCACCG
CGGCGCGCGAGGGCAAGAAGAAGATCAGCCCGTACATGCCTCAGGAAGGG
GCTGCGGGCATGGCGTATCACGGGTTGTGCGTCTTCTTGGTCACCCTGAC
GGTGAACTATCTCGTTATCCCCTTCCAGTTGCTTGGTCTGACGGAGTCGC
TGGACGTGTGGGGCACCTTCTCCTTCGGGATCCACGCCCTCGTCGTTGGG
CTTTACTTGGTCTGCCAAATCATCCCGACGAAAAAGGTACATTGCTTGGT
CTGACGGAGTCGCTGGACGTGTGGGGCACCTTCTCCTTCGGGATCCACGC
CCTCGTCGTTGGGCTTTACTTGGTCTGCCAAATCATCCCGACGAAAAAGG
TACA
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