mRNA_Ecto-sp9_F_contig1052.489.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1052.489.1
Unique NamemRNA_Ecto-sp9_F_contig1052.489.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1052.489.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB25_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.460e-42
Identity = 117/256 (45.70%), Postives = 132/256 (51.56%), Query Frame = 1 
Query:    1 MTSEPADHGVSRACGRHERPRKGERDEVRRGRKHPHECVDGWLR-------QSHHVPECR---QLLRVGVQT*R-------------VQRPWHGPSRRQTR*L*RSHPSTHSWGCF--RPRRTSSRSPFLGRSCRPHARDTPWSTGSDVISPRWTCSNILKSPRALR-HQGPLGAAR-----LGIGQRRSPSHGKIGEVDCTPMRVSTDGFVKVISSAAWRQWTCPSRRGITRRRGRLAKPVTTIISLDRLGPCRG 675
            MTSEP DHGVSRACGR ERPRKGERDEVRRGRKH     DG+++       +    P  R   +    G QT               V+     P       +    P  +SW     RP RT            P  R    S+  D  +P    S+ L+ P   R H   LG A      L + +   P+ G        PMRVSTDGFVKVISSAAWRQW CPSRRGITRRRGRLAKPVTTIISLDRLGPCRG
Sbjct:    1 MTSEPVDHGVSRACGRDERPRKGERDEVRRGRKHV--LTDGFVKVISSAAWRQWTCPSRRGIHEAAGAGGQTGHDLIVSAGSVHAEVVEPVTSEPRPGVAVGIVAVVPEPNSWVSLGARPGRTPE---------TPRGRQASTSSVPDGRAP---ISSSLRGPFDTRGHWEQLGWASSKDEPLRMEKSARPTVG--------PMRVSTDGFVKVISSAAWRQWMCPSRRGITRRRGRLAKPVTTIISLDRLGPCRG 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1052.489.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.460e-4245.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1052contigEcto-sp9_F_contig1052:18789..19683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_005490.1
Exons3
Model size678
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1052.489.1prot_Ecto-sp9_F_contig1052.489.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1052 18789..19561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928265.2860806-CDS-Ecto-sp9_F_contig1052:18788..190091622928265.2860806-CDS-Ecto-sp9_F_contig1052:18788..19009Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 18789..19009 -
1692277814.4596694-CDS-Ecto-sp9_F_contig1052:18788..190091692277814.4596694-CDS-Ecto-sp9_F_contig1052:18788..19009Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 18789..19009 -
1622928265.299039-CDS-Ecto-sp9_F_contig1052:19136..193711622928265.299039-CDS-Ecto-sp9_F_contig1052:19136..19371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 19137..19371 -
1692277814.4670193-CDS-Ecto-sp9_F_contig1052:19136..193711692277814.4670193-CDS-Ecto-sp9_F_contig1052:19136..19371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 19137..19371 -
1622928265.312886-CDS-Ecto-sp9_F_contig1052:19462..195611622928265.312886-CDS-Ecto-sp9_F_contig1052:19462..19561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 19463..19561 -
1692277814.4748158-CDS-Ecto-sp9_F_contig1052:19462..195611692277814.4748158-CDS-Ecto-sp9_F_contig1052:19462..19561Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1052 19463..19561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928265.3280675-UTR-Ecto-sp9_F_contig1052:19561..196831622928265.3280675-UTR-Ecto-sp9_F_contig1052:19561..19683Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1052 19562..19683 -
1692277814.4821694-UTR-Ecto-sp9_F_contig1052:19561..196831692277814.4821694-UTR-Ecto-sp9_F_contig1052:19561..19683Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1052 19562..19683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1052.489.1

>prot_Ecto-sp9_F_contig1052.489.1 ID=prot_Ecto-sp9_F_contig1052.489.1|Name=mRNA_Ecto-sp9_F_contig1052.489.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=185bp
MASSKSSRARMPTATPGRGSDVTGSTTLAWTEPAADEMTLTKPSVDTLMG
VLSATPDLVPFPLPWALVPAARPRHPVVDRLRRHQSPMDVLQYPQVSEGP
STPGATGSSSAGHRAKTIPFAWKNRRGRLHPHACVDGWLRQSHLVCRLEA
VDVSIPAGDHEAAGAVGQTGHDHNKSRPARSMPRS
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mRNA from alignment at Ecto-sp9_F_contig1052:18789..19683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1052.489.1 ID=mRNA_Ecto-sp9_F_contig1052.489.1|Name=mRNA_Ecto-sp9_F_contig1052.489.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:18789..19683- (Ectocarpus species9 EcSCA_722f female)
ATGACGTCGGAGCCTGCCGACCACGGGGTGTCTCGGGCGTGCGGCCGGCA
CGAGCGCCCAAGGAAGGGGGAACGGGACGAGGTCCGGCGTGGCCGAAAGC
ACCCCCATGAGTGTGTAGACGGATGGCTTCGTCAAAGTCATCACGTGCCC
GAATGCCGACAGCTACTCCGGGTCGGGGTTCAGACGTGACGGGTTCAACG
ACCTTGGCATGGACCGAGCCGGTCGAGACTATTATGGTCGTGACCGGTTT
GGCCAGCCGCCCCTGCCGCCTCGTGAATCCTCCGCCGGGATGGACACGTC
GACGGCCTCCAGGCGGCAGACGAGATGACTTTGACGAAGCCATCCGTCGA
CACACTCATGGGGGTGCTTTCGGCCACGCCGGACCTCGTCCCGTTCCCCC
TTCCTTGGGCGCTCGTGCCGGCCGCACGCCCGAGACACCCCGTGGTCGAC
AGGCTCCGACGTCATCAGTCCCCGATGGACGTGCTCCAATATCCTCAAGT
CTCCGAGGGCCCTTCGACACCAGGGGCCACTGGGAGCAGCTCGGCTGGTA
AGCCTAAATAGTACATTCACTAAGGGGTATCGAAAAGACGCCCGGATGTC
CAATACTGGTTTACATAGATTGCAATCTTAGGCTGACAAACACACGACAA
TCCCAAACGAATTCGTCGTCGCAGGGCATCGGGCAAAGACGATCCCCTTC
GCATGGAAAAATCGGCGAGGTCGACTGCACCCCCATGCGTGTGTCGACGG
ATGGCTTCGTCAAAGTCATCTCGTCTGCCGCCTGGAGGCAGTGGACGTGT
CCATCCCGGCGGGGGATCACGAGGCGGCGGGGGCGGTTGGCCAAACCGGT
CACGACCATAATAAGTCTCGACCGGCTCGGTCCATGCCGAGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1052:18789..19683-

>mRNA_Ecto-sp9_F_contig1052.489.1 ID=mRNA_Ecto-sp9_F_contig1052.489.1|Name=mRNA_Ecto-sp9_F_contig1052.489.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:18789..19683- (Ectocarpus species9 EcSCA_722f female)
ATGGCTTCGTCAAAGTCATCACGTGCCCGAATGCCGACAGCTACTCCGGG
TCGGGGTTCAGACGTGACGGGTTCAACGACCTTGGCATGGACCGAGCCGA
TGGCTTCGTCAAAGTCATCACGTGCCCGAATGCCGACAGCTACTCCGGGT
CGGGGTTCAGACGTGACGGGTTCAACGACCTTGGCATGGACCGAGCCGGC
GGCAGACGAGATGACTTTGACGAAGCCATCCGTCGACACACTCATGGGGG
TGCTTTCGGCCACGCCGGACCTCGTCCCGTTCCCCCTTCCTTGGGCGCTC
GTGCCGGCCGCACGCCCGAGACACCCCGTGGTCGACAGGCTCCGACGTCA
TCAGTCCCCGATGGACGTGCTCCAATATCCTCAAGTCTCCGAGGGCCCTT
CGACACCAGGGGCCACTGGGAGCAGCTCGGCTGGCGGCAGACGAGATGAC
TTTGACGAAGCCATCCGTCGACACACTCATGGGGGTGCTTTCGGCCACGC
CGGACCTCGTCCCGTTCCCCCTTCCTTGGGCGCTCGTGCCGGCCGCACGC
CCGAGACACCCCGTGGTCGACAGGCTCCGACGTCATCAGTCCCCGATGGA
CGTGCTCCAATATCCTCAAGTCTCCGAGGGCCCTTCGACACCAGGGGCCA
CTGGGAGCAGCTCGGCTGGGCATCGGGCAAAGACGATCCCCTTCGCATGG
AAAAATCGGCGAGGTCGACTGCACCCCCATGCGTGTGTCGACGGATGGCT
TCGTCAAAGTCATCTCGTCTGCCGCCTGGAGGCAGTGGACGTGTCCATCC
CGGCGGGGGATCACGAGGCGGCGGGGGCGGTTGGCCAAACCGGTCACGAC
CATAATAAGTCTCGACCGGCTCGGTCCATGCCGAGGTCGGGCATCGGGCA
AAGACGATCCCCTTCGCATGGAAAAATCGGCGAGGTCGACTGCACCCCCA
TGCGTGTGTCGACGGATGGCTTCGTCAAAGTCATCTCGTCTGCCGCCTGG
AGGCAGTGGACGTGTCCATCCCGGCGGGGGATCACGAGGCGGCGGGGGCG
GTTGGCCAAACCGGTCACGACCATAATAAGTCTCGACCGGCTCGGTCCAT
GCCGAGGTCG
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