mRNA_Ecto-sp9_F_contig1052.488.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI) HSP 1 Score: 924 bits (2388), Expect = 0.000e+0 Identity = 508/528 (96.21%), Postives = 514/528 (97.35%), Query Frame = 1
Query: 100 MSSSVLVCYVIQGDEDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGCPVEQEAAENAPAEAAAAQDFYAGEGVGVAHGPGLGLDAPGARGQATADENLAAGVSGMDIGGGERFDVGDHSGSGTRAARERRGERSFDVDXXXXXXXXXXXXXXXXXXXKSPVGGGSRGEHGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXGAYGDDDEDDNWKASVANQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAMGNLHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPSLQAFMGQAEEMGMLR 1683
MSSSVLVCYVIQGD+DDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFG PVE EAAENAPAEA AQDFYAGEGVGVAHGPGLGLDAPGARGQATADE+LA+GVSGMDIGGGERFDVGDHSGSGTR ARERRGERSFDVDXXXXXXXXXXXXXXXXXXX+SPVGGGSRGEHGDGG XXXXXXX XXXXXXXXXXXXXXXXGAYGDDDEDD WKASV NQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAM NLHE+ANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEG ESPRWQEAGFQE NVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPP+L AFMGQAEEMGMLR
Sbjct: 1 MSSSVLVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGGPVEHEAAENAPAEAVPAQDFYAGEGVGVAHGPGLGLDAPGARGQATADEDLASGVSGMDIGGGERFDVGDHSGSGTRVARERRGERSFDVDXXXXXXXXXXXXXXXXXXXRSPVGGGSRGEHGDGGRXXXXXXXYGXXXXXXXXXXXXXXXXGAYGDDDEDDTWKASVVNQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGAESPRWQEAGFQESNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGMLR 528
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK7_9PHAE) HSP 1 Score: 540 bits (1390), Expect = 1.570e-184 Identity = 316/360 (87.78%), Postives = 323/360 (89.72%), Query Frame = 1
Query: 610 MDIGGGERFDVGDHSGSGTRAARERRGERSFDVDXXXXXXXXXXXXXXXXXXX--KSPVGGGSRGEHGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXGAYGDDDEDDNWKASVANQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAMGNLHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPSLQAFMGQAEEMGMLR 1683
MDIGGG+RFDVG+ SGSGTRAARE RG RSF+VDXXXXXXXXXXXXXXXXXXX K PVGG S GE+G XXXXXXXXXXXXX XX WKASV NQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAM NLHE+ANFLGTPFSATSREHVNDLGKVWMCLFPD+EFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQS GGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPP+L AFMGQAEEMGMLR
Sbjct: 1 MDIGGGQRFDVGNDSGSGTRAAREGRGGRSFEVDXXXXXXXXXXXXXXXXXXXXXKRPVGGRSSGEYGXXXXXXXXXXXXXXXXDDDGHDRRYREXXXXXXXXXXXXXWKASVVNQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKGVGGPVVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDEEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSVGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGMLR 360
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO/CED-12 (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA) HSP 1 Score: 232 bits (591), Expect = 6.940e-64 Identity = 191/545 (35.05%), Postives = 255/545 (46.79%), Query Frame = 1
Query: 112 VLVCYVIQGDEDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGCPV---------------EQEAAENAPAEAAAAQDFYAGEGVGVAHGPGLGLDAPGARGQATADE--NLAAGVSGMDIGGGERFDVGDHSGSGTRAARERRGERSFDVDXXXXXXXXXXXXXXXXXXXKSPVGGGSRGEHGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXGAYGDDDEDDNWKASVANQASQGVKDFQKKTSQVAKTMGFG-AKKMWNAINKGV---GGP-VVPSEEAMGNLHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDE----FEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPSLQAFMGQAEE 1668
+L+ YV+QG+ D PETGV+SS + + + LTL +L+++FP+ GTFHFRLKV D G + + W+DLT +GDDI+ELA NLGG+E G H + VH+K+LP+ F PV ++ + APA AAAA H P ++ R A D+ A GGG S G R R G X SP ++ XXXXXXXXXX DD W ASV + + + + + A G G A+K + INKG GGP +P A+ L ++++ L TPF+ R H L ++W LFPD G SPRW+EAGFQ +V D TG L L+ MV D AL A A YP+AVVA N+TLMLADVL + + +R YWG+F+R AF ++FC AFR LD WAER A R FGQ L S P ++ AF+ +A +
Sbjct: 1 MLLHYVLQGEYDAPETGVESSLELQQE---QDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSH--EVVHVKVLPLSFDAPVLNGSDALPPDQIFDWNEDVSAAAPAAAAAA------------HVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDH-------DDSAQTWTASVNSTITSAINSRAAQDLKQAAKFGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSADAPALLRANAARAP-PRRYPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 520
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H196_ACACA) HSP 1 Score: 103 bits (256), Expect = 5.660e-19 Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 1
Query: 1093 LHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVF-DRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPSLQAF 1650
L E+ + EH L K+W +FPD E S +W+ GFQ + + D RG G+L L ++++ + + K + QS YP AV NLT ML ++L + K + +F D AF E++C+AF++LDHTWA+ A ++ +I + I ++L NP +++ F
Sbjct: 291 LWELQQLSDIAHDKENEEHEKMLLKLWSLVFPDTVLESRVSKQWKTMGFQGTDPATDLRGMGLLGLSNLLYMAEFHSDKLRKIIAVQSERKDHDYPVAVAGINLTKMLYELLHIGTED---PTKPIFNIFFDHAHAFEEMYCIAFQVLDHTWADMNASYMDWSNVIAAVRKQISDVLAQNPATIEMF 474
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO/CED-12 (domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQQ4_KLENI) HSP 1 Score: 92.8 bits (229), Expect = 8.940e-17 Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 1
Query: 1123 PFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSS-HYPWAVVANNLTLMLADVLEMRAN----QFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESN 1629
PFS+TS H L K+W +P + G+ S +W+E G+Q + S DFRG G ++L+++++F +++ R L + + + YP+AV NL+ ML D+L+++A + A R + D AF ++ AF LLD W A F ++ ++ + LL S+
Sbjct: 138 PFSSTSPSHQEALQKLWRLAYPHQQLTGMVSEQWKEMGWQGTDPSTDFRGGGFISLENLLYFAEKHPRDFQRLLKKEDGERAQWEYPFAVAGLNLSFMLVDLLDLKAEDGVPRSAPGRGFLRFLEDDDSAFDALYVRAFLLLDAEWLRMRASYMEFNVVMKAVRAKLEHLLSSS 311
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: Uncharacterized (protein n=4 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C360816) HSP 1 Score: 90.9 bits (224), Expect = 2.910e-16 Identity = 50/173 (28.90%), Postives = 88/173 (50.87%), Query Frame = 1
Query: 1093 LHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSS-HYPWAVVANNLTLMLADVLEMRA--NQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKS 1602
L + L PF T +H L +W FP+ +G+ S +W++ G+Q PN S DFRG G ++L++++FF + Y L Q ++ YP+AV N++ ML +L++ + + + + GAF E+FC+AF ++D W A F +++ T++
Sbjct: 104 LQRLQERLQVPFDETQLDHQEALKTLWHAAFPNIPLKGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARTYPESFHRLLFKQEGKRAAWEYPFAVAGINVSFMLIQMLDLSSVKPRCLPGINFIKLLGEDEGAFDELFCIAFEMMDAQWLAMHASYMEFNEVLQVTRT 276
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO (domain-containing protein n=8 Tax=Juglandaceae TaxID=16714 RepID=A0A833X553_JUGRE) HSP 1 Score: 90.1 bits (222), Expect = 3.520e-16 Identity = 49/173 (28.32%), Postives = 88/173 (50.87%), Query Frame = 1
Query: 1093 LHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLC-RAQSAGGSSHYPWAVVANNLTLMLADVLEMRA--NQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKS 1602
L + L PF T +H L +W FP+ +G+ S +W++ G+Q PN S DFRG G ++L++++FF + Y L + + + YP+AV N++ ML +L++ + + + + GAF E+FC+AF ++D W A F +++ T++
Sbjct: 80 LQRLQERLQVPFDETHLDHQEALKTLWRAAFPNIALKGLISDQWKDMGWQGPNPSTDFRGCGFISLENLLFFARTYPESFHRLLFKREGIRAAWEYPFAVAGINVSFMLIQMLDLSSVKPRCLPGINFIKLLGEDEGAFDELFCIAFEMMDAQWLAMHASYMEFNEVLQATRT 252
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH07_PYTIN) HSP 1 Score: 93.6 bits (231), Expect = 1.090e-15 Identity = 57/211 (27.01%), Postives = 89/211 (42.18%), Query Frame = 1
Query: 1060 PVVPSEEAMGNLHEVANFLGTPFSATSREHVNDLGKVWMCLFPDDEFEGV----ESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSH-YPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPSLQAFMGQAEEMGM 1677
P+ P + M + + L P + L +W ++ D G+ P W GFQ P+ + DFR G+L+LK +V+F + Y A + Q G S+ YPW N+T MLA R+ W F + A + +F F L DH W E A F +++ T V++E L+ LQ F+ + +
Sbjct: 2566 PLEPYQSTMQGYYAL---LKQPCVTDDPSYEELLKNMWNAMYTRDSAAGMAFERSGPSWSRLGFQRPDPTTDFRAGGMLSLKCLVYFAENYYEHASRMVEHQVPGSRSNTYPWGPAGINITCMLARTFWSVDGCLYKERQYNWPFFADKSALYIMFSEVFLLFDHLWDEMNAHYGIFSEVMQSTTGVVLEALDEAKGDLQTFLVEIRAQSL 2773
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R973_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 7.920e-8 Identity = 49/184 (26.63%), Postives = 81/184 (44.02%), Query Frame = 1
Query: 1114 LGTPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQ---EYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVF--------DRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNP 1632
+G P + +H L ++W+ L P+ F G +S W++ GFQ + DFRGTG L L+ +V++ + E R+ + CR YP A NL ML D++ + S G + AF +IFC D T+ ++ A +F +I + +L+ +P
Sbjct: 313 MGIPVNWDHPDHAAFLERLWVVLKPEVPFPGRKSDLWKDIGFQGKDPQTDFRGTGYLGLRCVVYWAESLGELAREMVHNCR--------QYPVCTAAINLVQMLDDLIGPLPSPNHESGSGGNELLLTFCHQDTPHNEAFEQIFCALLMRFDRTFQQQNATYMDFPRIRQQFLQEVNTMLDKHP 488
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Match: ELMO (domain-containing protein 2 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158F0A4B) HSP 1 Score: 62.4 bits (150), Expect = 1.020e-6 Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 1
Query: 1120 TPFSATSREHVNDLGKVWMCLFPDDEFEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSHYPWAVVANNLTLMLADVL 1428
T + + EH L K+W L P + E + +WQ+ GFQ + DFRG G+L LK++V+F +EY A + S Y +A+V N+T M +L
Sbjct: 132 TAYDSDDPEHEILLLKLWNLLKPTEALEARVTKQWQDIGFQGDDPKTDFRGMGILGLKNLVYFAEEYPVAAAHVL-LHSTHPRHGYAFAIVGINITSMALRLL 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1052.488.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1052.488.1 >prot_Ecto-sp9_F_contig1052.488.1 ID=prot_Ecto-sp9_F_contig1052.488.1|Name=mRNA_Ecto-sp9_F_contig1052.488.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=529bp MSSSVLVCYVIQGDEDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGback to top mRNA from alignment at Ecto-sp9_F_contig1052:5683..15251- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1052.488.1 ID=mRNA_Ecto-sp9_F_contig1052.488.1|Name=mRNA_Ecto-sp9_F_contig1052.488.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=9569bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:5683..15251- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1052:5683..15251- >mRNA_Ecto-sp9_F_contig1052.488.1 ID=mRNA_Ecto-sp9_F_contig1052.488.1|Name=mRNA_Ecto-sp9_F_contig1052.488.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3174bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:5683..15251- (Ectocarpus species9 EcSCA_722f female)back to top |