mRNA_Ecto-sp9_F_contig1052.487.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE) HSP 1 Score: 452 bits (1162), Expect = 2.120e-150 Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 1
Query: 1 GRPDRQERLSDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVRSWYYGTGPGRDEEVEEENTSLEEMCDIKDAAGFWLGTDIPNLQVRMWYMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVCRPRLTGTLKPEA 657
GRPDRQERL DEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVRSWYYGTGPGRDEEVEEE TSLEEMCDIKDAAGFWL TDIPNLQVRMWYMQGLEKLWQLQLY AATDIINHCGDPYIA+ HLQNTTVYPFCSGCGTSRSTGTSTWCSKC RQASLCA+CDLPVVGLY+ECPGCHHGGHAEH+MNWF VSSECPVETCSHVC+PRLTG LKPEA
Sbjct: 414 GRPDRQERLRDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVRSWYYGTGPGRDEEVEEEKTSLEEMCDIKDAAGFWLATDIPNLQVRMWYMQGLEKLWQLQLYAAATDIINHCGDPYIAEMHLQNTTVYPFCSGCGTSRSTGTSTWCSKCERQASLCALCDLPVVGLYVECPGCHHGGHAEHLMNWFEVSSECPVETCSHVCKPRLTGILKPEA 632
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB28_ECTSI) HSP 1 Score: 132 bits (333), Expect = 2.960e-34 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1
Query: 385 QNTTVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMM 567
Q T VYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMM
Sbjct: 8 QPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMM 68
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UJF5_9STRA) HSP 1 Score: 107 bits (267), Expect = 4.800e-21 Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 1
Query: 211 MCDIKDA------AGFWLGTDIPNLQ---VRMWYMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
+C++ D AG + +PNL VR WY+ ++ L Q+ L+ A +I +C DP + + Q+TT++ C CG G+++ C C R+ C +C V G+++ CPGC HGGH +H + WF + CP C H C
Sbjct: 687 LCELMDVIVPPVTAGGLAKSRLPNLSIDVVREWYLSYIDLLQQMCLFTQAASLIKNCNDPVVGSLNQQSTTIHESCPVCGKPLQGGSNSSCKSCRRKVGTCFICHESVKGMFVWCPGCGHGGHLDHALEWFGKNEVCPTG-CGHKC 831
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPR4_NANGC) HSP 1 Score: 97.1 bits (240), Expect = 2.100e-20 Identity = 51/131 (38.93%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 298 EKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGC----------------------GTSRSTGT-STWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
E L +L L+ A +++ H D YI + NT +Y C+ C TS ST T S WC KC S CA+C PV G+Y+ CPGC HGGH +H+ WFA +SECP C H C
Sbjct: 1 ELLQRLTLWEVANELVEHLEDRYIHGLYASNTNIYAACAQCRRPLGPGSGGTKGVMSASSPGSATSSSTPTPSPWCGKCRALVSQCALCLQPVRGVYVWCPGCGHGGHIDHLQEWFAANSECPTG-CGHRC 130
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: ANAPC4_WD40 (domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WIZ9_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.490e-20 Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 250 TDIPNLQVRMW----YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTS-RSTGTSTW------CSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
T++ + + W YM ++ L QLQ+Y A +++ +C D I Q ++++T+VY C+ C S+G S + C+ C+ A+LC++C LPV GLY+ CP C HGGH +H+ WFA + CP CSH C
Sbjct: 884 TNVEKVMGKAWLQHIYMHYIDLLHQLQIYTTANELVANCSDQSIRQMNMKSTSVYFNCARCSKPLESSGPSEFSVPISLCASCSNAATLCSICQLPVRGLYVWCPVCAHGGHLDHLTEWFAHETVCPTG-CSHHC 1017
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR99_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.380e-20 Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 1
Query: 253 DIPNLQVRMW----YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGT-------SRSTGT---STWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVCRPRLTGTL 645
++ N+ + W YM ++ L QL++Y AA +++ +C D I Q ++++TTVY C GC S + G + CS C +A+ C++C LPV GLY+ CP C HGGH EH+ +WF CP CSH C L ++
Sbjct: 895 NVENVMGKSWLQQIYMHYIDLLHQLRIYSAANELVANCSDQSIRQMNMKSTTVYFNCGGCSKPFESYLPSNANGEGAPAALCSHCRNRATRCSICQLPVRGLYVWCPVCSHGGHLEHLADWFDHEDVCPTG-CSHRCSLNLVTSM 1038
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC50_PLAHL) HSP 1 Score: 103 bits (257), Expect = 9.820e-20 Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 283 YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTS------RSTGTS-TWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVCRPRLTGT 642
YM ++ L QLQ+Y A ++I +C D I Q ++++T+VY C+ C S R G + C+ C+ A+LC++C LPV GLY+ CP C HGGH H+ WFA + CP CSH C L T
Sbjct: 908 YMHYIDLLHQLQIYTTANELIANCSDQSIRQMNMKSTSVYFNCARCSKSLESSGPRELGVPLSLCTHCSNPATLCSICQLPVRGLYVWCPVCAHGGHLNHLTEWFAQETVCPTG-CSHHCSLSLVDT 1033
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: ANAPC4_WD40 (domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=D0N6V5_PHYIT) HSP 1 Score: 103 bits (256), Expect = 1.260e-19 Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 250 TDIPNLQVRMW----YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTS-RSTGTS------TWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
T + + + W YM ++ L QLQ+Y A +++ +C D I Q ++++T+VY C+ C S+G S + C+ C+ A+LC++C LPV GLY+ CP C HGGH +H+ WFA + CP CSH C
Sbjct: 816 TSVEKVMGKAWLQHIYMHYIDLLHQLQIYTTANELVVNCSDQSIRQMNMKSTSVYFNCARCSKPLESSGPSELGVPVSLCTSCSNAATLCSICQLPVRGLYVWCPVCAHGGHLDHLTEWFAHETVCPTG-CSHHC 949
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: ANAPC4_WD40 (domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3M4F6_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.860e-19 Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 250 TDIPNLQVRMW----YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCGTS-RSTGTS------TWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
T + + + W YM ++ L QL++Y A +++ +C D I Q ++++T+VY C+ C S+G S + C+ C+ A+LC++C LPV GLY+ CP C HGGH +H+ WFA + CP CSH C
Sbjct: 586 TSVEKVMGKAWLQHIYMHYIDLLHQLRIYTTANELVANCSDQSIRQMNMKSTSVYFNCARCSKPLESSGPSELGVPVSLCTSCSNAATLCSICQLPVRGLYVWCPVCAHGGHLDHLTEWFAHETVCPTG-CSHKC 719
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP53_PYTOL) HSP 1 Score: 102 bits (253), Expect = 3.000e-19 Identity = 53/135 (39.26%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 253 DIPNLQVRMW----YMQGLEKLWQLQLYVAATDIINHCGDPYIAQRHLQNTTVYPFCSGCG-----TSRSTGTST---WCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMNWFAVSSECPVETCSHVC 621
++ N+ + W YM ++ L QL++Y AA ++I +C D I Q ++++TT+Y C+ C T + G S CS C A+ C+VC LPV GLY+ CP C HGGH EH+ WF+ CP CSH C
Sbjct: 821 NVENVMGKSWLQQIYMHYIDLLHQLRIYQAANELILNCPDQSIRQMNMRSTTMYSNCANCTKPFETTLNADGESVSSYLCSNCNNTATRCSVCQLPVRGLYVWCPVCSHGGHLEHLTEWFSEEEVCPTG-CSHRC 954 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1052.487.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1052.487.1 >prot_Ecto-sp9_F_contig1052.487.1 ID=prot_Ecto-sp9_F_contig1052.487.1|Name=mRNA_Ecto-sp9_F_contig1052.487.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=214bp MSEAGFAYDTLAVLEVVRSWYYGTGPGRDEEVEEENTSLEEMCDIKDAAGback to top mRNA from alignment at Ecto-sp9_F_contig1052:1518..5376+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1052.487.1 ID=mRNA_Ecto-sp9_F_contig1052.487.1|Name=mRNA_Ecto-sp9_F_contig1052.487.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3859bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:1518..5376+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1052:1518..5376+ >mRNA_Ecto-sp9_F_contig1052.487.1 ID=mRNA_Ecto-sp9_F_contig1052.487.1|Name=mRNA_Ecto-sp9_F_contig1052.487.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1052:1518..5376+ (Ectocarpus species9 EcSCA_722f female)back to top |