mRNA_Ecto-sp9_F_contig10514.483.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI) HSP 1 Score: 253 bits (645), Expect = 7.640e-75 Identity = 162/164 (98.78%), Postives = 164/164 (100.00%), Query Frame = 1
Query: 1 MADGYRPSPYLQEVMEVLEDTKASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPSGNXXXXXXXXXXXXXXXXXXXXXXXXXXRLRAREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE 492
MADGY+PSPYLQEVMEVLEDTKASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPSGNXXXXXXXXXXXXXXXXXXXXXXXXXXRLRAREKVLSDSLF+EFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE
Sbjct: 154 MADGYKPSPYLQEVMEVLEDTKASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPSGNXXXXXXXXXXXXXXXXXXXXXXXXXXRLRAREKVLSDSLFKEFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE 317
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE) HSP 1 Score: 227 bits (578), Expect = 7.500e-67 Identity = 160/209 (76.56%), Postives = 162/209 (77.51%), Query Frame = 1
Query: 1 MADGYRPSPYLQEVMEVLEDTK---------------------------------------------ASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPSGNXXXXXXXXXXXXXXXXXXXXXXXXXXRLRAREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE 492
MADGYRPSPYLQEVMEVLEDTK ASQPWLEAQEAKNLPLPPLAHAAEQAMQAQP+G XXXXXXXXXXXXXXXXXXXXXXXXXX LRAREK+LSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE
Sbjct: 39 MADGYRPSPYLQEVMEVLEDTKGCCVEISTAFNLNLPSKSNXXXXXXXXXGRKNSDNPTAANTVIPQASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAREKILSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE 247
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7ATX5_9COLE) HSP 1 Score: 80.1 bits (196), Expect = 8.340e-16 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 256 AREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIME 486
AR++ + EFD + YQ+ML KR KLP+Y M++ IVRTV + QVVV+SGETGCGKTTQV Q +LD + E
Sbjct: 11 ARDEAMDARFREEFDIRKNDVKYQNMLEKRKKLPSYAMKNEIVRTVASDQVVVISGETGCGKTTQVAQFILDDFVSE 87
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A8S0_9COLE) HSP 1 Score: 82.0 bits (201), Expect = 4.110e-15 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 256 AREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIME 486
AR+ V+ EFD + YQ+ML KR KLP+YEM++ IV TV + QVVV+SGETGCGKTTQV Q +LD + E
Sbjct: 118 ARDNVMDAQFREEFDIRKNNVKYQNMLEKRKKLPSYEMKNDIVHTVASNQVVVISGETGCGKTTQVAQFILDDFVSE 194
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z857_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.830e-14 Identity = 61/170 (35.88%), Postives = 79/170 (46.47%), Query Frame = 1
Query: 16 RPSPYLQEVMEVLEDTKASQPWLEAQEAKNLPLPPLAHAAEQAMQAQPSGNXXXXXXXXXXXXXXXXXXXXXXXXXXRLRA---------------REKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMI 480
+P+P+L ++ ++L DT QPWL A E L P A+ +QA P + R A R VL L+R P + M AKR +LPAY+M D IV+ + QVVV+SGETGCGKTTQVPQLVLD +I
Sbjct: 625 KPAPHLADIAQLLADTTQQQPWLVANETAALSSKPSAN--QQAPSQPPDQSKSGTEGVDVSRPPVPAVGSAVEMPLTRSSAMHGSLISSLRKCMVPRHHVLDAMLYRRVPL-----PARVMQAKREQLPAYQMADGIVKAISQNQVVVISGETGCGKTTQVPQLVLDHLI 787
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: Dosage (compensation regulator-like Protein n=2 Tax=Tribolium castaneum TaxID=7070 RepID=D6WWR0_TRICA) HSP 1 Score: 79.0 bits (193), Expect = 4.840e-14 Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 256 AREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEKE 492
A + L+ SL+ +F +K + Y +M+AKR+KLPA+ M+D I++ + QVVV+SGETGCGKTTQV Q +LD + +++
Sbjct: 113 AEDATLNQSLYEDFLQKQSSPKYMNMIAKRTKLPAFNMKDEILKVIDENQVVVISGETGCGKTTQVAQFILDDFLQKQK 191
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: ATP-dependent (DNA/RNA helicase DHX36-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189B96A3) HSP 1 Score: 78.6 bits (192), Expect = 6.620e-14 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 268 VLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIME 486
VL + L++ + K+++R Y+ ML R KLPAY MR+ I+ + N +VVV+SGETG GKTTQVPQ +LD+ I +
Sbjct: 135 VLDEKLYQSLEAKSQSREYRSMLEFRKKLPAYTMREQIIEVIENNRVVVISGETGSGKTTQVPQFILDSYIQK 207
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: ATP-dependent (DNA/RNA helicase DHX36-like isoform X1 n=2 Tax=Megalopta genalis TaxID=115081 RepID=UPI001443593F) HSP 1 Score: 77.8 bits (190), Expect = 1.240e-13 Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 259 REKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEK 489
R L + L +E+++K+ + Y +ML R KLPAY+ R ++ +RN QVVV+SGETGCGKTTQV QL+LD I+++
Sbjct: 203 RNSCLDEELLQEYERKSLSAEYANMLNFRLKLPAYQKRLEVLELIRNNQVVVISGETGCGKTTQVVQLILDDQILQR 279
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: ATP-dependent (DNA/RNA helicase DHX36-like isoform X1 n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EAFBF29) HSP 1 Score: 77.0 bits (188), Expect = 2.310e-13 Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 271 LSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMI 480
LSDSL +E+++K ++ M+ R KLP++EMR+ ++ + N QVVV+SGETGCGKTTQVPQ +LD I
Sbjct: 269 LSDSLLKEYNEKQLQPNFRKMMTFREKLPSFEMREKLMDDINNNQVVVISGETGCGKTTQVPQFILDNYI 338
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Match: ATP-dependent (DNA/RNA helicase DHX36 n=1 Tax=Tribolium madens TaxID=41895 RepID=UPI001CF73541) HSP 1 Score: 76.6 bits (187), Expect = 3.090e-13 Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 256 AREKVLSDSLFREFDKKTRTRPYQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKTTQVPQLVLDTMIMEK 489
A + L+ SL+ EF KK Y DM KR KLPA+ M++ I++ + QVVV+SGETGCGKTTQV Q +LD + +K
Sbjct: 147 AEDATLNLSLYEEFLKKQSNPKYVDMKKKRKKLPAFSMKEEILKVIDENQVVVISGETGCGKTTQVAQFILDDFLQKK 224 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10514.483.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10514.483.1 >prot_Ecto-sp9_F_contig10514.483.1 ID=prot_Ecto-sp9_F_contig10514.483.1|Name=mRNA_Ecto-sp9_F_contig10514.483.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=164bp MADGYRPSPYLQEVMEVLEDTKASQPWLEAQEAKNLPLPPLAHAAEQAMQback to top mRNA from alignment at Ecto-sp9_F_contig10514:1185..3283- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10514.483.1 ID=mRNA_Ecto-sp9_F_contig10514.483.1|Name=mRNA_Ecto-sp9_F_contig10514.483.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2099bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10514:1185..3283- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10514:1185..3283- >mRNA_Ecto-sp9_F_contig10514.483.1 ID=mRNA_Ecto-sp9_F_contig10514.483.1|Name=mRNA_Ecto-sp9_F_contig10514.483.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10514:1185..3283- (Ectocarpus species9 EcSCA_722f female)back to top |