mRNA_Ecto-sp9_F_contig10510.482.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10510.482.1
Unique NamemRNA_Ecto-sp9_F_contig10510.482.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X4_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 7.560e-67
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +FVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ
Sbjct:   93 SFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 194          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN7_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.380e-65
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +FVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRRE+SHQLVTRGVYRFLRHPSYFGWFWWSLGTQ
Sbjct:   93 SFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREQSHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 194          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFM5_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 4.010e-32
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHSKEY  AL+ SW EF L+ +L+P  K  P V   GV L + G W R+ AMWTA SNF+H I   + + H LVT G+YRF+RHPSY GWF+W++G+Q
Sbjct:   85 SFLLNHSKEYHLALVVSWVEFWLQVWLVPSWKANPTVFTTGVVLVVFGQWCRILAMWTAASNFSHRIEYIKRKEHVLVTHGIYRFIRHPSYTGWFFWTMGSQ 186          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1W5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.130e-32
Identity = 63/126 (50.00%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAG------------------------VALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            AF++NHSKEYT A +ASW EF +E F  P LK     + AG                        + L L+G   R GAMWTAGSNFNH I  ++E+ HQLVT G+YR+LRHPSYFGWFWWS+G Q
Sbjct:   87 AFIINHSKEYTVAAIASWIEFWVERFTFPGLKLAGFQLGAGXXXXXXXXEATWWMYGACILSGLGLVLVLVGQACRSGAMWTAGSNFNHVIATKKEKEHQLVTHGLYRYLRHPSYFGWFWWSIGLQ 212          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YAN0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.370e-32
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHS  Y  AL  SWAE+ LEA+  P  K  P  + AG+ L ++G +FRVGAMWTA SNF+H I   + + HQL+T G+Y ++RHPSYFGWF+WS+G+Q
Sbjct:   83 SFLLNHSDAYQMALFTSWAEYWLEAYFFPASKFSPFFMWAGLGLIVMGQFFRVGAMWTAKSNFSHRIEIAKRKDHQLITHGLYTYIRHPSYFGWFYWSIGSQ 184          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814GZD0_9BILA)

HSP 1 Score: 126 bits (316), Expect = 1.760e-31
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHSKEY  A L+SW EF LEA + P +K    +   G+ L L G +FR  AM+TAG+NFNH + + R++ H LVT+GVYR +RHPSYFGWF+WS+GTQ
Sbjct:  123 SFLLNHSKEYAIAALSSWTEFFLEALIFPSIKHNLYLRFTGLFLCLFGEFFRKLAMYTAGTNFNHFVQETRQKDHVLVTKGVYRLVRHPSYFGWFYWSIGTQ 224          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQM9_SAPPC)

HSP 1 Score: 122 bits (306), Expect = 1.590e-30
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHS  Y  AL  SW E+ +EA+  P+ K +P  +  G+ L ++G +FRVGAMWTA SNF+H I   + + H+L+T G+Y ++RHPSYFGWF+WS+G+Q
Sbjct:   83 SFLLNHSDAYQVALFTSWVEYWVEAYFFPDAKFRPLFMWLGLLLVVMGQFFRVGAMWTAKSNFSHRIEIAKRKDHELITHGLYTYIRHPSYFGWFYWSIGSQ 184          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PLV5_MICSU)

HSP 1 Score: 121 bits (303), Expect = 2.180e-30
Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHS EY  A L+SW EF +E F+ PELK+   + +AG+ + ++G + R  AM TAGSNFNH +   + ESH+LVT+GVY + RHPSY GWF+WS+GTQ
Sbjct:   48 SFLLNHSFEYNVAALSSWFEFTVEKFIFPELKQVGWLSSAGLLMVVLGDFLRKAAMLTAGSNFNHIVQNEKSESHRLVTQGVYGWCRHPSYVGWFYWSIGTQ 149          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TI94_STEMI)

HSP 1 Score: 120 bits (301), Expect = 2.460e-30
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHSKEY  A L SW EF +E +  P  K    V A G+ L ++G   R GAM+TAG+NFNH I   REE H LV+ G+Y + RHPSY GWFWWS+GTQ
Sbjct:   27 SFLLNHSKEYGIAALCSWMEFFVEWYFFPHWKELRWVTAVGLFLCIVGELVRKGAMFTAGTNFNHIIQSHREEGHVLVSHGLYAWCRHPSYVGWFWWSVGTQ 128          
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Match: Protein-S-isoprenylcysteine (O-methyltransferase n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7Q7Z6_BRAPC)

HSP 1 Score: 123 bits (308), Expect = 2.900e-30
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHWFRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLGTQ 306
            +F+LNHSKEY  A  +SW+EF +EA L P LK+   +   G++L L G  FR  AM+TAG NFNH + +   + H LVT+GVYR +RHPSYFGWF+WS+GTQ
Sbjct:  127 SFLLNHSKEYAIAAFSSWSEFFIEAILFPTLKQNLYLRCIGLSLCLFGESFRKLAMYTAGKNFNHYVQETHHKEHVLVTKGVYRLVRHPSYFGWFYWSIGTQ 228          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10510.482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein-S-isoprenylcysteine7.560e-6799.02O-methyltransferase n=1 Tax=Ectocarpus siliculosus... [more]
Protein-S-isoprenylcysteine1.380e-6598.04O-methyltransferase (Fragment) n=1 Tax=Ectocarpus ... [more]
Uncharacterized4.010e-3253.92protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Protein-S-isoprenylcysteine5.130e-3250.00O-methyltransferase n=1 Tax=Fibrocapsa japonica Ta... [more]
Protein-S-isoprenylcysteine7.370e-3253.92O-methyltransferase n=2 Tax=Saprolegniaceae TaxID=... [more]
Protein-S-isoprenylcysteine1.760e-3155.88O-methyltransferase n=1 Tax=Brachionus calycifloru... [more]
Protein-S-isoprenylcysteine1.590e-3050.00O-methyltransferase n=2 Tax=Saprolegnia TaxID=4769... [more]
Protein-S-isoprenylcysteine2.180e-3053.92O-methyltransferase (Fragment) n=1 Tax=Micrurus su... [more]
Protein-S-isoprenylcysteine2.460e-3054.90O-methyltransferase (Fragment) n=1 Tax=Stegodyphus... [more]
Protein-S-isoprenylcysteine2.900e-3054.90O-methyltransferase n=1 Tax=Brachionus plicatilis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10510contigEcto-sp9_F_contig10510:140..2679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.2
Seed ortholog evalue4.7e-54
Seed eggNOG ortholog2880.D7G1X4
Preferred nameICMT
KEGG rclassRC00003,RC00460
KEGG koko:K00587,ko:K08437
KEGG ReactionR04496
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0000003,GO:0001701,GO:0001889,GO:0003006,GO:0003674,GO:0003824,GO:0003880,GO:0004671,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006464,GO:0006479,GO:0006481,GO:0006520,GO:0006575,GO:0006605,GO:0006612,GO:0006725,GO:0006790,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0006998,GO:0007163,GO:0007275,GO:0007323,GO:0008104,GO:0008134,GO:0008140,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008277,GO:0008284,GO:0008757,GO:0009116,GO:0009119,GO:0009787,GO:0009788,GO:0009790,GO:0009791,GO:0009792,GO:0009908,GO:0009966,GO:0009968,GO:0009987,GO:0010256,GO:0010340,GO:0010467,GO:0010646,GO:0010648,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016740,GO:0016741,GO:0018410,GO:0019538,GO:0019752,GO:0019866,GO:0022414,GO:0023051,GO:0023057,GO:0030010,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031156,GO:0031224,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032101,GO:0032104,GO:0032107,GO:0032259,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0035264,GO:0036211,GO:0040007,GO:0042127,GO:0042175,GO:0042278,GO:0042886,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043436,GO:0043687,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046128,GO:0046483,GO:0046498,GO:0046499,GO:0046578,GO:0046907,GO:0046999,GO:0048367,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051179,GO:0051186,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0051998,GO:0055086,GO:0060176,GO:0061008,GO:0061024,GO:0061458,GO:0065007,GO:0070727,GO:0071432,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072657,GO:0080134,GO:0080135,GO:0090150,GO:0090567,GO:0097164,GO:0098827,GO:0140096,GO:1901135,GO:1901360,GO:1901419,GO:1901420,GO:1901564,GO:1901605,GO:1901657,GO:1902531,GO:1905957,GO:1905958,GO:2000241,GO:2000243
EggNOG free text desc.protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
EggNOG OGsCOG2020@1,KOG2628@2759
EC2.1.1.100
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04030
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIsoprenylcysteine carboxyl methyltransferase
Ec32 orthologEc-07_003770.1
Exons3
Model size718
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10510.482.1prot_Ecto-sp9_F_contig10510.482.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10510 140..2381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928264.5453293-CDS-Ecto-sp9_F_contig10510:139..3491622928264.5453293-CDS-Ecto-sp9_F_contig10510:139..349Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 140..349 +
1692277814.327418-CDS-Ecto-sp9_F_contig10510:139..3491692277814.327418-CDS-Ecto-sp9_F_contig10510:139..349Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 140..349 +
1622928264.5608606-CDS-Ecto-sp9_F_contig10510:1207..13031622928264.5608606-CDS-Ecto-sp9_F_contig10510:1207..1303Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 1208..1303 +
1692277814.342396-CDS-Ecto-sp9_F_contig10510:1207..13031692277814.342396-CDS-Ecto-sp9_F_contig10510:1207..1303Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 1208..1303 +
1622928264.5761352-CDS-Ecto-sp9_F_contig10510:2267..23811622928264.5761352-CDS-Ecto-sp9_F_contig10510:2267..2381Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 2268..2381 +
1692277814.3540485-CDS-Ecto-sp9_F_contig10510:2267..23811692277814.3540485-CDS-Ecto-sp9_F_contig10510:2267..2381Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10510 2268..2381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928264.5871737-UTR-Ecto-sp9_F_contig10510:2381..26791622928264.5871737-UTR-Ecto-sp9_F_contig10510:2381..2679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10510 2382..2679 +
1692277814.3645265-UTR-Ecto-sp9_F_contig10510:2381..26791692277814.3645265-UTR-Ecto-sp9_F_contig10510:2381..2679Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10510 2382..2679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10510.482.1

>prot_Ecto-sp9_F_contig10510.482.1 ID=prot_Ecto-sp9_F_contig10510.482.1|Name=mRNA_Ecto-sp9_F_contig10510.482.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=140bp
AFVLNHSKEYTGALLASWAEFGLEAFLLPELKRQPAVVAAGVALALIGHW
FRVGAMWTAGSNFNHEIMQRREESHQLVTRGVYRFLRHPSYFGWFWWSLG
TQGGGGGGGGGNGRSPPPSVVASPTGRHGSEGFSDGSRG*
back to top

mRNA from alignment at Ecto-sp9_F_contig10510:140..2679+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10510.482.1 ID=mRNA_Ecto-sp9_F_contig10510.482.1|Name=mRNA_Ecto-sp9_F_contig10510.482.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2540bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10510:140..2679+ (Ectocarpus species9 EcSCA_722f female)
GCCTTCGTGCTCAACCACAGCAAGGAGTACACGGGGGCGCTGCTGGCGAG CTGGGCGGAGTTCGGCCTGGAGGCCTTCCTGTTGCCGGAGCTGAAGCGCC AACCGGCCGTCGTCGCCGCCGGCGTCGCGCTGGCCCTGATCGGGCATTGG TTCCGCGTGGGGGCCATGTGGACGGCGGGCTCGAACTTCAACCACGAGAT CATGCAAAGAGTGAGGAGGAGGTGGAGGAGTGAGGAGAGAAGAGGCTGTT TTTGTCCTCGCTCGAGGCCCAACAACCGCTTTGATTTTTTTGTTTGCGGT TTTTGAGAGAGAGGTTCTGGCGGTGATTTTCCGCTTACCGTAGGTCTACT GAGGCAGTGAAGAGGAGGAAGGGGGGGCTATTTAGACGTCGTTCGAGACG TTGGGAGGCCAACAAGGGTTTTGATTTTTTTGTTTGCGGTTTTTGAGAGA GAGAGAGAGTCTGGCTGTAATTTTCCGCTTACCGTAGGTCTACTGGGGCA GTGAAGAGGCGGAAGGAGGGAGGCTATTTAGACGTCGTTCGAGATGTTGG CAGGCCAAAAAGGTTTTTGATCTTTTGTTTGCGGTTCTTGACAGAAAGGT TCTGGCTGTAATTTTCCGCTTACATAGGTCCACTGAGCCAGTGAGGAGGG AGGAGAGAGGCTGTTATAGACCTTGCTCGAGATGTCGGAAGACCAACAAC TGCTCTGGTATTGTTTTTGGTATGTGAGAGGTTCGGTCTTTTTCCGCTTC TTAGGTCTACCTAGCCGTCTCGTTTGCCTCCCTGCGCGAAGAGACCGTAT CCAGCAACGACGGTCGGCTTCTGCTGCTAGCGTAACGCCTCCGCCAGTCG TTCGTTAAAGCTTCTCCCTGTTCCCCCCTCCCCTCCCCTCCCCCCCTGCT TGGTTTTCGTAACGTACGCAACGCCGTCTTTTGGTGCCGCTTCTTTGGGT GCGGCGCGTGCGTGCCGGATGGCGGGGACCCCATCTTGTTCGTCCCGATG GCGGGGACCCCATATTGTTTGTCCCGATGGCGGGGACCCCTTGTCTTTGA TTTTTTGTGCGCCGACAGAGAGAAGAATCGCACCAGCTCGTTACACGCGG AGTGTACCGGTTCCTCCGACACCCCAGCTATTTCGGGTGGTTCTGGTGGA GCCTAGGCACCCAGGTGAGAGAAACACACACGCACAGCAGCAGCAACTAG CCCTTGCTTTCTTTTGCCCAGCGGCGGCGACTGTCGGCGAGCAGCCGTGT GGAGGTTATGGGGGGGGGCGGGGTCCGTGGTAGACAGGCCTTTGGTGCTA TGCATATGTGACTTACTCGCAGGCTAGGAATTTTTGTTTTTTGGGGGGGC TGTGTGGTGGTGACGGAGGAGGCAGGTGCAGCGAGGGGTGGCACTGCTGT GGAGTCTATCTGCTGTCACTGCTTGCTGCAACGGCAAGACCTCGCTGTCG CGTATGCGAGTGTTGCTGCTGGTGCTGCTGCTGTTGCTACCGGCTGCTGT AGAGGCTGGGGTCGCCGGCTGCTGTCTTGCACAACAGGAACGCATTTGTT AGGAGGCGTTGAAATCGTCCCTGGGTATGTATGCCCGCATCTCCGTTATG CTAGCACACGGCATCAAGAGGCGATCGCCGGGTACCCTGTGTGGTCCCTT CAACCCCGCTGTCCCCTGTCCTCGAATACCTGCGCATCCCCCCCCCCCCC TCCCCCCCTAATGCTCCGTCCTCTCGAGGACGCGTGGTCAACGGTCTAAC CGCTAAGGCATGCAAAATATAAAGAGTACGCCCCCCCCCCCGCGCTCCAT TTTCACAATCCATCGCCCCCCCTCTTGTGTTCGATCTTGCTCAGCTTCTG CTGTGCAACCCGCTGTGCTTCCTGGTGTACGTGGTCGCCGCCAGCTCCTT CTTCCGAAGGCGCATCCCTTACGAAGAAGCCCTCCTCGAAACCTTCTACC CGGAACAGTACCCGGCGTACGTGCGAAGAACCTTCATCGGGATCCCCTTC GTGCCCAACCGTAACAACCGTGGCCGCAACAGCGGCGGCAGCAGCAGCAG CAGGCGTTCTTGGGAGTTGGGCGGGGGCGGAGGGGGGGGGCCGGCGGGCG AAAGAACGCCGCTGGGCGTCGTCGACAGGGGGGGGGGGGGGGGGGGGGGG GCGGGAATGGACGGTCCCCTCCCCCGTCGGTGGTGGCTTCCCCGACAGGG AGACACGGCAGTGAGGGGTTTTCTGACGGCAGCAGAGGGTAACAGGTGGT TTTTTGGTGGTTTTCGAGTTTTGCTGCTGTGTCTCTGCGAAGTACAGCGC ACATTACGAAACCGATTCTGTACAGAGGGGTTTGGTTGTTTTCTCCATCC AGTATGGATTTTCTATCCGCGAGGGATGAGAATTAGTCCTCGATTTTGGT GTGTTGTTGTTGCCGACGACGGGAAAGGGGAGACTTTTTTTTTGTGTTGA CTGCTTGTGACACAGGATGATTGACGGGGCCTCAAACGTTTTCATGTCGC GTGCGCTTTTGTTTGCCTCCCTAGTAAAAACAAATGCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10510:140..2679+

>mRNA_Ecto-sp9_F_contig10510.482.1 ID=mRNA_Ecto-sp9_F_contig10510.482.1|Name=mRNA_Ecto-sp9_F_contig10510.482.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10510:140..2679+ (Ectocarpus species9 EcSCA_722f female)
GCCTTCGTGCTCAACCACAGCAAGGAGTACACGGGGGCGCTGCTGGCGAG
CTGGGCGGAGTTCGGCCTGGAGGCCTTCCTGTTGCCGGAGCTGAAGCGCC
AACCGGCCGTCGTCGCCGCCGGCGTCGCGCTGGCCCTGATCGGGCATTGG
TTCCGCGTGGGGGCCATGTGGACGGCGGGCTCGAACTTCAACCACGAGAT
CATGCAAAGAGCCTTCGTGCTCAACCACAGCAAGGAGTACACGGGGGCGC
TGCTGGCGAGCTGGGCGGAGTTCGGCCTGGAGGCCTTCCTGTTGCCGGAG
CTGAAGCGCCAACCGGCCGTCGTCGCCGCCGGCGTCGCGCTGGCCCTGAT
CGGGCATTGGTTCCGCGTGGGGGCCATGTGGACGGCGGGCTCGAACTTCA
ACCACGAGATCATGCAAAGAAGAGAAGAATCGCACCAGCTCGTTACACGC
GGAGTGTACCGGTTCCTCCGACACCCCAGCTATTTCGGGTGGTTCTGGTG
GAGCCTAGGCACCCAGAGAGAAGAATCGCACCAGCTCGTTACACGCGGAG
TGTACCGGTTCCTCCGACACCCCAGCTATTTCGGGTGGTTCTGGTGGAGC
CTAGGCACCCAGGGGGGGGGGGGGGGGGGGGGGGGCGGGAATGGACGGTC
CCCTCCCCCGTCGGTGGTGGCTTCCCCGACAGGGAGACACGGCAGTGAGG
GGTTTTCTGACGGCAGCAGAGGGTAAGGGGGGGGGGGGGGGGGGGGGGGC
GGGAATGGACGGTCCCCTCCCCCGTCGGTGGTGGCTTCCCCGACAGGGAG
ACACGGCAGTGAGGGGTTTTCTGACGGCAGCAGAGGGTAA
back to top