mRNA_Ecto-sp9_F_contig10495.463.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10495.463.1
Unique NamemRNA_Ecto-sp9_F_contig10495.463.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10495.463.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.100e-140
Identity = 251/271 (92.62%), Postives = 256/271 (94.46%), Query Frame = 1 
Query:    1 LSLVLSIHPPNLCQFSRAKAEHQTWLRTLEAANQTTPPSAEGKXXXXXXXXXXXXXXXXXXXXXXDCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEVLSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR 813
            L  ++ +H     +FSRAKAEHQTWLRTLEAANQT PPSAEGK     XXXXXXXXXXXXXXXXX CPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVE+LSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR
Sbjct:  118 LERLMRLHRNVFMEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR 388
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BLAST of mRNA_Ecto-sp9_F_contig10495.463.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-17
Identity = 52/152 (34.21%), Postives = 89/152 (58.55%), Query Frame = 1 
Query:  235 FRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEVLSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPR 690
            +++ +V  +GA+V  G++ D   +V ++E G +V +++R  NS+GV+RYRTR GW+SE  RG GR+PI EVLSV  +    + ++E+ E              ++  I+ G     +  +R++G N LAR+  V  +L ++  R++  SLPR
Sbjct: 1195 YKLRIVCAEGAVVRDGIEIDSCASVGSMEMGEIVESFDRCVNSSGVLRYRTRRGWLSEQTRGHGREPIAEVLSVWKSQI--DDNDEKAERN------------VKGRIEDG-----IPDIRSSGANVLARIQPVYVELYSSLLRLVQQSLPR 1327
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BLAST of mRNA_Ecto-sp9_F_contig10495.463.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T089_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 6.390e-13
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1 
Query:  235 FRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEVLSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMN 726
            F++ V    GALV  G++ +GS  +   E GT + A+ER AN+AG++RYRT+ GWISE+ R   +  IVEVLS+GLT                           +  I +  R   +  LR     +L R H+  +Q+    AR++A   P    R   + N++
Sbjct:   25 FQLRVTGFGGALVREGIEIEGSRVIFVAEMGTELEAHERKANNAGLIRYRTKLGWISEYRRDQQKSAIVEVLSIGLTNDA----------------------TSKAVIDESSR---LLSLREACSVALLRTHSSLRQIGVNLARIIASDSPTLRSRSSSSMNLS 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10495.463.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UBA1.100e-14092.62domain-containing protein n=1 Tax=Ectocarpus silic... [more]
HECT-type1.670e-1734.21E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia ... [more]
Uncharacterized6.390e-1331.71protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10495contigEcto-sp9_F_contig10495:2..3427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score436.8
Seed ortholog evalue8.1e-120
Seed eggNOG ortholog2880.D7G2U2
EggNOG free text desc.Ubiquitin associated domain
EggNOG OGs2D4WP@1,2SWJ7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-16_001500.1
Exons5
Model size891
Cds size891
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10495.463.1prot_Ecto-sp9_F_contig10495.463.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10495 2..3427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928260.2030284-CDS-Ecto-sp9_F_contig10495:1..781622928260.2030284-CDS-Ecto-sp9_F_contig10495:1..78Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 2..78 -
1692277812.7627485-CDS-Ecto-sp9_F_contig10495:1..781692277812.7627485-CDS-Ecto-sp9_F_contig10495:1..78Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 2..78 -
1622928260.2223194-CDS-Ecto-sp9_F_contig10495:501..6701622928260.2223194-CDS-Ecto-sp9_F_contig10495:501..670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 502..670 -
1692277812.7723205-CDS-Ecto-sp9_F_contig10495:501..6701692277812.7723205-CDS-Ecto-sp9_F_contig10495:501..670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 502..670 -
1622928260.2950354-CDS-Ecto-sp9_F_contig10495:1141..13211622928260.2950354-CDS-Ecto-sp9_F_contig10495:1141..1321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 1142..1321 -
1692277812.7801728-CDS-Ecto-sp9_F_contig10495:1141..13211692277812.7801728-CDS-Ecto-sp9_F_contig10495:1141..1321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 1142..1321 -
1622928260.3121777-CDS-Ecto-sp9_F_contig10495:2218..23331622928260.3121777-CDS-Ecto-sp9_F_contig10495:2218..2333Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 2219..2333 -
1692277812.788391-CDS-Ecto-sp9_F_contig10495:2218..23331692277812.788391-CDS-Ecto-sp9_F_contig10495:2218..2333Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 2219..2333 -
1622928260.3375785-CDS-Ecto-sp9_F_contig10495:3077..34271622928260.3375785-CDS-Ecto-sp9_F_contig10495:3077..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 3078..3427 -
1692277812.8023376-CDS-Ecto-sp9_F_contig10495:3077..34271692277812.8023376-CDS-Ecto-sp9_F_contig10495:3077..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10495 3078..3427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10495.463.1

>prot_Ecto-sp9_F_contig10495.463.1 ID=prot_Ecto-sp9_F_contig10495.463.1|Name=mRNA_Ecto-sp9_F_contig10495.463.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=297bp
LSLVLSIHPPNLCQFSRAKAEHQTWLRTLEAANQTTPPSAEGKEQTTDGA
SAAAPAAGGGGGGGGDCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGS
VAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEVL
SVGLTGQGGEPSEEETESETEHRRRVQQQQQLEQHIQQGGRRRPVHGLRA
TGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCE
FLSESLREGFALGLDRTEGSRGASPTPEARAPHLAGVLEPGSSALLD
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mRNA from alignment at Ecto-sp9_F_contig10495:2..3427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10495.463.1 ID=mRNA_Ecto-sp9_F_contig10495.463.1|Name=mRNA_Ecto-sp9_F_contig10495.463.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3426bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10495:2..3427- (Ectocarpus species9 EcSCA_722f female)
CTCTCCCTCGTGCTTTCCATCCACCCCCCCAACCTGTGCCAGTTTTCTCG
AGCCAAGGCGGAACACCAGACATGGTTGCGCACCCTCGAAGCGGCAAACC
AAACCACCCCCCCGTCCGCCGAGGGAAAAGAGCAAACCACAGACGGCGCG
AGCGCCGCCGCACCGGCCGCCGGAGGTGGCGGGGGTGGGGGTGGGGATTG
TCCGCCGGAGATGCCTTGGCCGGAGCCTGACTTTTTCCGGATCAATGTCG
TGGCGCAGGACGGGGCTCTGGTCGGGTCCGGGCTGGACAGCGACGGCAGC
GTGGCGGTGCACACAGTGGAGTGCGGGACGGTGGTCGTGGCGTACGAGAG
GTACATACGCGCGTTGTGTTATAGGTGTTTTGTGCCGGGTGTGTCTTTAG
TGTTTGTTGGAGATTGCCCACGCGAACCGGCTGACCAATGAAAAGACGTA
AGTCTCGGGGTGCGGTTGAACGCAGAAAATGCTGCTGAAGTAGGCCATGA
GCTGGAACCCCGTGAAGGGCGCTTGTGTGTTAGACGTGTGTTTGTTAGTC
GCGTTTGACTTGCGGTTGCCTGGAGGGATACCGCACGTACCGTACGTGGC
GTACGTTATAAAACACACCTGGACCGCTTGTCAAAGCTCGATTACTCCGC
GTCGAAGAAGGTTAAAGGTGTACACATTGAAGGACGCGTTTTCGGAAAGC
CCTCGGCGCGACGGTTCCAACGCCGCCATTTTTCGGCACCTCCACTGTCT
CTGCTGTTGAGTCTTCCAGCTTTTGCAGTCGGTTTAAGGAAGGGGTGTGA
TATCTTGTGTCACCCACGGTACCGCTTGCACGCCCAACACGCTTTCCTCC
TCCACCCGTTCCCCTTCATTTTCTCCCCTTTTTTTGTACTTTTTTTTTTT
ACGCCCATGTGTCCCGCTCGACAACGGCGACCATGACCACAACAATGATG
ACAACAACGACGACTGCAACAACGTCAACAACAACAACAACGACGACTGC
AACAACGTCAACAACAACAACAACGACGACTGCAACAACGCCAACAACAA
CAACAACAACTATCCGAACAACAACAACAACGACGACATTACAGGGCGGC
GAACTCTGCCGGCGTCATGCGTTACCGCACCCGCCACGGCTGGATCTCGG
AGCACGCGCGCGGCACCGGCCGGCAGCCGATAGTGGAGGTACTCTCCGTC
GGTCTGACGGTGAGAAAAAGTTAACGATGCTATGCACAAGCAGTTGTTAC
GTTTAGATACCACCGATAGGGGACGTGCCGTCCGTGGCCGGACGGTGAGA
AATTGATAAAAGTTGCTAAATAGGTACACTGCGAAGCAGTTTGTGTGTTT
AGATATGCATACCACCGATACGGGAGAATGCTGCTGTCCGTTGGCCTGGC
GGTGAGAAGTGAAAGTTGCTAGTGCGCAGGAGTTGTACCTTGATACCTTG
GTGAAAGTTTTCGACTTGTATACTGCGGCGTCTGCTCCCGTGTTGTAAGA
GGCCGCCACTCAAGATGCCCCACACCACGTTTGAGGCCCGCCCTCTCTCT
CGGCCGTGTCAAGCTACACATCCGTCTACCTCCCAGGGACCAGTGTTTTC
GGTCGTGTCGCAATGGTTTTACGCCCAGCCCAGCCCCATAAGCTGACAGC
CTGTCCCGCAACATCCTGCTCCATTTAAGAGAGCTGAGCATGCACCAGCG
GGTCTGCATTGTGCACCTTTGAGGAGAGAGACCGAGGAAGAGACGCCCGC
AGTTGATACAACGGCATGCATGGTGGCTTCTGCTGGAGACTTTGTGTTTG
TGACTGCTGTGCTCTTTTGTGTCTTCTCTTGTGTAAATGTATTCGGTGAC
CCTGTTTGCTACAGAACGGGCGGGCCCGCAGTTGCGTAGTATAGAAAGAG
AGGTTCAGATTTTCACGAAAAAATAGAAAGTAGGTCTAGGAAAACATGGC
TCTGCGGTGGATCCTTACACCAAGCTATGTATAACCACCTGTGCTCGACG
AAATAAGAAGCTGAGCCTCATCCCGATTTTGACGTTTCTTTTCTGCGGGC
CCGCACTGACTGTGTCTTCCGGAACAAATCCCGCGGTATATATCCGTGAA
ACGCAGGGACAGGGGGGAGAGCCCTCGGAGGAGGAGACGGAATCCGAAAC
GGAGCACCGCAGGCGCGTCCAGCAGCAGCAGCAGCTTGAACAGCACATAC
AGCAGGGGGGCCGGCGGCGCCCGGTGCACGGCCTGAGGGCGACAGGGTGC
AACTCGCTGGCTAGGCTGCACACGGTCACCAAGCAGGTTCGTCGTGGTGC
CTGCGCGCGCGTGAGGGGGGGGGGGGGGGCAGGGGGAAGGGTGGTTGTCG
TCGGTAGGCGGTGGTGGTCGTGGTGATGGTGGAGGAAGAGGTGTTGGCGA
TGGTTGTTGCTGGATGATCGGCTTGGAACTTGTTCTTGGTTGTTGGTTGT
TGGCGTGGCAAGCGGTTTCTTGTTAATGGCGTCTCGTTGGTGTCTTCGCT
GCTGTTGGTACCGTCGTTTCGGAGGCTGTCGTCGGCAACAACCCGTCGGC
CATTGATGGATGAACCCATCACCACCGACGCAAAAACACAACGGTACGAA
GGGTCGTAAAAAATAGCTATTTACCCCCCGACTTCCTATGCGATGAAGCC
ACCACCACCGACGCAAAAAGACGCTGGTGTGAACGGTCGTACAAAATACT
TTAAAGTAATTACTTGCCCATGCCCCCCCCCCCCTGTTCCCGCGAATTCT
TTGGCAGCTCGTGACCGCGTTTGCTCGGGTGCTAGCTGGGTCTCTGCCAC
GACCCCACCACAGGGAGGACTTAACCCCGAACATGAACCCGGTGGCGCCG
GCGGTGTGCGAATTCTTGTCGGAGAGCCTGCGGGAAGGCTTCGCCCTTGG
GCTGGACAGGACGGAGGGCTCTCGCGGTAAGCGCTCAGAGAAGAGGTGCA
ACAAGAGGGAGAGGAGAGGAGAGGGAGGGAGGGGTGTACTCGAAGCCGTG
CATGCCGTAGTCGTTAGACCGTTGACCTTGCATCCCTATAAAGCCGGGAC
GGAGCGATATGCCGGGTTTTCGCCGGCCCAGGCTATCACATGACAAGGGT
GAACCAGATGTGCCGTGGGTTTATTGAAGGGAGGGGAGAAAAGAGACCAA
GGCGCAGGGGGGGGGGGGAGGCAGAGGAAGAGTAGACCTGTGGTGCAAAA
GACGGATAGAGAGACTTCCCGGGATGGTGTCGGTTCTTTCTTGATCGCCA
CCGGACTCAAAATTTGTTGACCTGGAGCCAAAGGTAGCCGATTTGTTGCA
CCAGGTATCACTTATCACCGCGCTCCTTCTCCCCCCCCCCCCCCCATAGG
AGCCTCGCCAACCCCGGAGGCCCGTGCCCCGCACCTTGCCGGGGTGCTAG
AGCCGGGGTCTTCGGCGTTGTTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10495:2..3427-

>mRNA_Ecto-sp9_F_contig10495.463.1 ID=mRNA_Ecto-sp9_F_contig10495.463.1|Name=mRNA_Ecto-sp9_F_contig10495.463.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1782bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10495:2..3427- (Ectocarpus species9 EcSCA_722f female)
CTCTCCCTCGTGCTTTCCATCCACCCCCCCAACCTGTGCCAGTTTTCTCG
AGCCAAGGCGGAACACCAGACATGGTTGCGCACCCTCGAAGCGGCAAACC
AAACCACCCCCCCGTCCGCCGAGGGAAAAGAGCAAACCACAGACGGCGCG
AGCGCCGCCGCACCGGCCGCCGGAGGTGGCGGGGGTGGGGGTGGGGATTG
TCCGCCGGAGATGCCTTGGCCGGAGCCTGACTTTTTCCGGATCAATGTCG
TGGCGCAGGACGGGGCTCTGGTCGGGTCCGGGCTGGACAGCGACGGCAGC
GTGGCGGTGCACACAGTGGAGTGCGGGACGGTGGTCGTGGCGTACGAGAG
CTCTCCCTCGTGCTTTCCATCCACCCCCCCAACCTGTGCCAGTTTTCTCG
AGCCAAGGCGGAACACCAGACATGGTTGCGCACCCTCGAAGCGGCAAACC
AAACCACCCCCCCGTCCGCCGAGGGAAAAGAGCAAACCACAGACGGCGCG
AGCGCCGCCGCACCGGCCGCCGGAGGTGGCGGGGGTGGGGGTGGGGATTG
TCCGCCGGAGATGCCTTGGCCGGAGCCTGACTTTTTCCGGATCAATGTCG
TGGCGCAGGACGGGGCTCTGGTCGGGTCCGGGCTGGACAGCGACGGCAGC
GTGGCGGTGCACACAGTGGAGTGCGGGACGGTGGTCGTGGCGTACGAGAG
GGCGGCGAACTCTGCCGGCGTCATGCGTTACCGCACCCGCCACGGCTGGA
TCTCGGAGCACGCGCGCGGCACCGGCCGGCAGCCGATAGTGGAGGTACTC
TCCGTCGGTCTGACGGGCGGCGAACTCTGCCGGCGTCATGCGTTACCGCA
CCCGCCACGGCTGGATCTCGGAGCACGCGCGCGGCACCGGCCGGCAGCCG
ATAGTGGAGGTACTCTCCGTCGGTCTGACGGGACAGGGGGGAGAGCCCTC
GGAGGAGGAGACGGAATCCGAAACGGAGCACCGCAGGCGCGTCCAGCAGC
AGCAGCAGCTTGAACAGCACATACAGCAGGGGGGCCGGCGGCGCCCGGTG
CACGGCCTGAGGGCGACAGGGTGCAACTCGCTGGCTAGGCTGCACACGGT
CACCAAGCAGGGACAGGGGGGAGAGCCCTCGGAGGAGGAGACGGAATCCG
AAACGGAGCACCGCAGGCGCGTCCAGCAGCAGCAGCAGCTTGAACAGCAC
ATACAGCAGGGGGGCCGGCGGCGCCCGGTGCACGGCCTGAGGGCGACAGG
GTGCAACTCGCTGGCTAGGCTGCACACGGTCACCAAGCAGCTCGTGACCG
CGTTTGCTCGGGTGCTAGCTGGGTCTCTGCCACGACCCCACCACAGGGAG
GACTTAACCCCGAACATGAACCCGGTGGCGCCGGCGGTGTGCGAATTCTT
GTCGGAGAGCCTGCGGGAAGGCTTCGCCCTTGGGCTGGACAGGACGGAGG
GCTCTCGCGCTCGTGACCGCGTTTGCTCGGGTGCTAGCTGGGTCTCTGCC
ACGACCCCACCACAGGGAGGACTTAACCCCGAACATGAACCCGGTGGCGC
CGGCGGTGTGCGAATTCTTGTCGGAGAGCCTGCGGGAAGGCTTCGCCCTT
GGGCTGGACAGGACGGAGGGCTCTCGCGGAGCCTCGCCAACCCCGGAGGC
CCGTGCCCCGCACCTTGCCGGGGTGCTAGAGCCGGGGTCTTCGGCGTTGT
TGGACGAGCCTCGCCAACCCCGGAGGCCCGTGCCCCGCACCTTGCCGGGG
TGCTAGAGCCGGGGTCTTCGGCGTTGTTGGAC
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