mRNA_Ecto-sp9_F_contig1049.461.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE) HSP 1 Score: 629 bits (1622), Expect = 1.680e-226 Identity = 334/353 (94.62%), Postives = 343/353 (97.17%), Query Frame = 1
Query: 1 MKAVVLLLCVALKFCSAFNLARGFRPLTVTCPRSYGDVSRSGERFGVGRLSSSGHGGRGKSVRAATSMVERADPDRYGAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDKTDPT 1059
MKAVVLLLCVALKFCSAF+LARGFRPL VTCPR YGD RSGERFGVGRLSSS HGGRGKSVRA+T+MVERADPDRY AAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFD+QNRVLTYGI GAVVMRAIFIGLGEA MSVFHPILLGFAGIL++SSYTLLSESEGDGDEDLSDNKL+AFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFG +VSTELSL IITGVLAAGVAASLILPG+KTDPT
Sbjct: 1 MKAVVLLLCVALKFCSAFHLARGFRPLAVTCPRRYGDGRRSGERFGVGRLSSSAHGGRGKSVRASTTMVERADPDRYVAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDAQNRVLTYGIIGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLILPGEKTDPT 353
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT8_ECTSI) HSP 1 Score: 367 bits (942), Expect = 1.950e-125 Identity = 191/198 (96.46%), Postives = 196/198 (98.99%), Query Frame = 1
Query: 466 MRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDKTDPT 1059
MRAIFIGLGEAAMSVFHPILLGFAGIL++SSYTLLSESEGDGDEDLSDNKL+AFASS+LDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVA VLGFVGCKIGG+FFG DVSTELSLGIITGVLAAGVAASLILPGDKTDPT
Sbjct: 1 MRAIFIGLGEAAMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSSLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAVVLGFVGCKIGGDFFGYDVSTELSLGIITGVLAAGVAASLILPGDKTDPT 198
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Integral (membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA) HSP 1 Score: 335 bits (859), Expect = 2.170e-110 Identity = 178/280 (63.57%), Postives = 219/280 (78.21%), Query Frame = 1
Query: 208 ERADPDRYGAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDK 1047
E DPDRY A+ + + A AFGAG++ G + A+ +FAGYVVE SLSVDNLFVFLLLF++F VP Q RVL +GI GAV++R +FI LGEAA+ F P+LLGFA IL+ S+Y L +E EG G+ DL+DN++V F+S L AT+ YDGDKFFTMVDGVRRATPLLLVLVCVELSD+VFAVDSIPAVF T+DPF+VYTSNI+AI+NLRSL+T+L++AV DL YLRPAVA VL FVG K+ E+FG +V T LSLG+I+ +L GVA SL L GD+
Sbjct: 76 ETPDPDRYKVAVRNSLISIAAAAAFGAGISVVQGSEAAVGYFAGYVVEQSLSVDNLFVFLLLFEYFNVPISYQQRVLRWGIVGAVILRGVFIALGEAALESFQPVLLGFAAILMVSAYKLFTEEEG-GEADLTDNQVVQFSSKILKATDQYDGDKFFTMVDGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSL-LKGDE 353
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Integral (membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA) HSP 1 Score: 326 bits (835), Expect = 1.100e-107 Identity = 176/277 (63.54%), Postives = 214/277 (77.26%), Query Frame = 1
Query: 202 MVERADPDRYGAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDED-LSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASL 1029
+ E DP+RY A+ T + GA FGAG+ G + AL++FAGY+VE SLSVDNLFVFLLLF++F VP Q RVL +GI GAV++R IF+ LG+AA+ F P+LL FAGIL+ SSY LL+E GDG+E+ L +NK+V + L ATE YDGD+FFTMVDG+RRATPLLLVLVCVE SD+VFAVDSIPAVF VTKDP IVY+SNI+AILNLRSL+T+L++AV DLVYLRPAVA VL FVG K+G E+F V T LSLGII+ +LA GV SL
Sbjct: 5 LEEPPDPNRYATALRNTLLSIAGAALFGAGITYVKGTELALEYFAGYIVEQSLSVDNLFVFLLLFEYFSVPVAYQGRVLQWGIIGAVILRGIFVALGQAALESFQPVLLIFAGILLVSSYKLLTEG-GDGEEESLHNNKIVQVSKRLLRATEEYDGDRFFTMVDGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSL 280
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7T9_OSTLU) HSP 1 Score: 295 bits (755), Expect = 8.630e-96 Identity = 154/259 (59.46%), Postives = 198/259 (76.45%), Query Frame = 1
Query: 277 AFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDKTD 1053
AFGAG+ G DKA ++FAGY++E SLSVDNLFVF+LLF++FKVP + Q RVL YGI GA+VMRA+ +G G + F PILL FAGILIFSSY LL+E E + +ED+ DN +V F + L+ +E YDGD FFT+ +GV+ ATPLLLVL VE+SD+VFAVDSIPAVF VTKDPFIVYTSN++AIL+LR L+TL++ AV +L YL+ AVA VLGF+G K+ E+ G +V TE SL ++ +L GV ASL+LP + +
Sbjct: 23 AFGAGIGAVEGADKASEYFAGYLLEQSLSVDNLFVFVLLFEYFKVPPERQTRVLNYGIVGALVMRAVMVGAGVELIENFQPILLVFAGILIFSSYKLLAEGEEE-EEDMGDNAIVKFVGNFLEVSEDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISKAVGELKYLQTAVALVLGFIGAKMIVEYAGVEVPTEASLAVVVTMLGGGVGASLMLPSEDKE 280
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Integral (membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U074_9STRA) HSP 1 Score: 299 bits (765), Expect = 1.180e-95 Identity = 159/261 (60.92%), Postives = 203/261 (77.78%), Query Frame = 1
Query: 271 AIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDG-DEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRR-ATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDK 1047
A+ FG GV G D L+++AGY+VE SLSVDNLFVF++LF++FKVP D Q RVL++GIFGA+ MRA+ + G A+ F +LL FAGILIF+S LL+E EG+G +EDL+DN++V FA S + ++YDG FFT V G R ATPLLLVL+CVELSD+VFAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+LA+A+ DL YL+PAVA +LG VG K+G E+FG +VS +SLG+IT +L +GV ASL L D+
Sbjct: 138 ALLFGLGVWAWKGADSGLEYYAGYLVEQSLSVDNLFVFVVLFEYFKVPTDFQGRVLSWGIFGAMAMRAVMVFAGVEAIENFRVVLLAFAGILIFTSVKLLAEDEGEGGEEDLADNQIVKFARSLITTVDTYDGPNFFTEVPGQGRVATPLLLVLICVELSDVVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLANAMVDLPYLKPAVALILGLVGLKLGAEYFGFEVSNAVSLGVITSLLGSGVWASLYLKPDR 398
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Integral (membrane protein TerC,riboswitch-linked n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAW2_OSTTA) HSP 1 Score: 294 bits (752), Expect = 2.300e-95 Identity = 152/259 (58.69%), Postives = 197/259 (76.06%), Query Frame = 1
Query: 277 AFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDKTD 1053
AFGA + G D A ++FAGY++E SLSVDNLFVF+LLF++F+VP Q VL YGIFGA++MRA+ I G + F PILL FAGILIFSSY L+S+ + D +ED++DN +V F S D ++ YDGD FFT+ +GV+ ATPLLLVL VE+SD+VFAVDSIPAVF VTKDPFIVYTSN++AIL+LR L+TL+++AV +L YL+ AVA VLGF+G K+ E+ G ++ TELSL ++ +L+ GVAASL LP D D
Sbjct: 21 AFGAAIGATSGSDAASEYFAGYLLEQSLSVDNLFVFVLLFEYFQVPPARQKVVLNYGIFGALIMRAVMIVAGVELIENFKPILLVFAGILIFSSYKLISQGDSDEEEDMADNAVVKFCSKLFDVSDDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISTAVGELKYLQTAVALVLGFIGSKMVVEYTGVEIPTELSLAVVVTLLSGGVAASLYLPDDSKD 279
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA) HSP 1 Score: 297 bits (760), Expect = 2.890e-95 Identity = 154/268 (57.46%), Postives = 204/268 (76.12%), Query Frame = 1
Query: 238 AIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSE---SEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLI 1032
A+ T+ A + A FGAG+ G++ L+F AGY+VE SLSVDNLFVFLLLFK+F+VP +N+VL +GIFGA+++R I IG+G A+ +F PI L FA +L +SSY +L+E EG+ +EDL DN ++ AS L ++ YDG KFFT+VDGV+ ATPLLL LVCVELSDIVFAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+L+ AV +L YL+PAV VLGF+G K+G E++G ++ST +SLG++ +L GV S++
Sbjct: 101 ALKQTSLAVVSAAMFGAGIFWFKGVESGLEFAAGYLVEQSLSVDNLFVFLLLFKYFQVPKCYENQVLNWGIFGALLLRGIMIGIGVEAVELFQPIFLVFAAVLAYSSYKILAEWVTGEGEEEEDLEDNAIIKLASKVLTVSDEYDGGKFFTVVDGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVL 368
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EER2_MICCC) HSP 1 Score: 289 bits (739), Expect = 1.170e-93 Identity = 154/259 (59.46%), Postives = 199/259 (76.83%), Query Frame = 1
Query: 256 AATIGA-IAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLSESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASL 1029
AA +GA +AFG GV +G +KA +FFAGY++E SLSVDNLFVF+L+F +FKVP SQ RVL YGI+GA+VMRA I G A++ F PILL FAG+LIFSSY L++E E + +ED+S+N +V F S+ L ++ YDG+ FFT +G + ATPLLL L +ELSD+VFAVDSIPAVF +T+DPFIVY+SNI+AI+ LRSLF +A+ V +L YL+ AVAAVLGFVGCK+ EF G ++ TE SL ++ G+L AGVA SL
Sbjct: 2 AAWVGAAVAFGLGVGAVMGAEKAEEFFAGYLLEQSLSVDNLFVFVLVFDYFKVPLASQPRVLNYGIWGAMVMRAAMIIAGYEAVTNFKPILLVFAGVLIFSSYKLIAEGEEEEEEDMSENAIVKFCSNLLPVSKDYDGENFFTTENGAKIATPLLLCLCVIELSDVVFAVDSIPAVFGITEDPFIVYSSNIFAIMGLRSLFAFVATMVAELEYLQTAVAAVLGFVGCKMVVEFGGVEIPTEASLAVVVGMLGAGVALSL 260
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XW62_HEMAN) HSP 1 Score: 292 bits (748), Expect = 6.190e-93 Identity = 155/280 (55.36%), Postives = 201/280 (71.79%), Query Frame = 1
Query: 217 DPDRYGAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDSQNRVLTYGIFGAVVMRAIFIGLGEAAMSVFHPILLGFAGILIFSSYTLLS-ESEGDGDEDLSDNKLVAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGCDVSTELSLGIITGVLAAGVAASLILPGDKTD 1053
DP Y A+ T A A AFG GV +G + L +F GY++E SLSVDNLFVF+LLF++FKVP Q + L +GI GAV+MR +FIG G A+ F P+LL FAG L+FSSY +L+ E LS+N +V FAS +++T YDGD FFT+VDGV+RATPLLLV+VC+ELSDI+FAVDSIPA+F VT+DPFI++TSNI+AIL LR+LF ++A +E L YL AVA VLGFVG K+ EF G ++S E +LG++ VL AGVAASL+ G + +
Sbjct: 130 DPMTYETALRNTGIAVAAAAAFGTGVWLNMGAEAGLSWFTGYILEESLSVDNLFVFILLFQYFKVPRSGQEKALAWGIAGAVLMRGLFIGAGIVAVKSFRPVLLAFAGFLVFSSYKMLTVEXXXXXXXXLSNNAVVKFASGVVNSTSKYDGDNFFTVVDGVKRATPLLLVVVCIELSDILFAVDSIPAIFGVTEDPFIIFTSNIFAILGLRALFQVVAKLMESLEYLEKAVAIVLGFVGVKMMAEFGGIEISEEAALGVVVSVLGAGVAASLVKNGQEEE 409 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1049.461.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1049.461.1 >prot_Ecto-sp9_F_contig1049.461.1 ID=prot_Ecto-sp9_F_contig1049.461.1|Name=mRNA_Ecto-sp9_F_contig1049.461.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=354bp MKAVVLLLCVALKFCSAFNLARGFRPLTVTCPRSYGDVSRSGERFGVGRLback to top mRNA from alignment at Ecto-sp9_F_contig1049:14788..23488- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1049.461.1 ID=mRNA_Ecto-sp9_F_contig1049.461.1|Name=mRNA_Ecto-sp9_F_contig1049.461.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8701bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1049:14788..23488- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1049:14788..23488- >mRNA_Ecto-sp9_F_contig1049.461.1 ID=mRNA_Ecto-sp9_F_contig1049.461.1|Name=mRNA_Ecto-sp9_F_contig1049.461.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2124bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1049:14788..23488- (Ectocarpus species9 EcSCA_722f female)back to top |