mRNA_Ecto-sp9_F_contig1049.459.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE) HSP 1 Score: 212 bits (539), Expect = 7.170e-65 Identity = 104/181 (57.46%), Postives = 139/181 (76.80%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGREKRVGIT-----CHVCHEEGQIRRNCPKNKEKQKQGTK-GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF++L ++Y++VTDEVI A MEEL + PM P +NPD+YFNQKHLL ++ KMG+ ISD+ FKDIC+QGF+++YKD+K+MV+RDPTF++ +QST+RN FLD QS+ G KG+ GR + T CH C+E G IRRNCPK K + K+ TK G+ K+CS H +T+HSDEEC
Sbjct: 111 ISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.530e-61 Identity = 104/181 (57.46%), Postives = 138/181 (76.24%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGREKRVGIT-----CHVCHEEGQIRRNCPKNKEKQKQGTK-GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF++L ++Y++VTDEVI A MEEL + PM P +NPDDYFNQKHLL ++ KMG+ ISD+ FKDIC+QGF+++YKD+K+MV+RDPTF++ + ST+RN FLD QS+ G KG+ GR + T CH C+E G IRRNCPK K + K+ TK G+ K+CS H +T+HSDEEC
Sbjct: 129 ISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 309
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.260e-60 Identity = 98/183 (53.55%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+F++ Q+Q+T+RN FLD + + KG+ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDERMRKRTKGEIAGRVFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 209 bits (532), Expect = 3.370e-60 Identity = 106/183 (57.92%), Postives = 137/183 (74.86%), Query Frame = 1
Query: 1 EVSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGREKRVGIT------CHVCHEEGQIRRNCPKNKEKQKQGTK-GGSGKFCSVHKSTTHSDEEC 528
++SGDGQAAF++L +YNKVTDEVI ATMEEL++TPMEPRQNPDDYFNQKHLL KA+KMG+ ISD F D C+ GFT +YKD+K+++YRDP F++ ++Q+T+R+ FLD QS+NG KG GR + T C C E+G I RNC + + K K+ TK G+ K+CSVH +T HSDEEC
Sbjct: 88 KISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEEC 270
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE) HSP 1 Score: 200 bits (508), Expect = 5.380e-60 Identity = 100/183 (54.64%), Postives = 132/183 (72.13%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A + +L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYK IK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFTELKANYNRVTDEVISAKLNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE) HSP 1 Score: 204 bits (518), Expect = 3.060e-59 Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.440e-58 Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 204 bits (518), Expect = 6.230e-58 Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRVFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.340e-57 Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.360e-57 Identity = 101/183 (55.19%), Postives = 134/183 (73.22%), Query Frame = 1
Query: 4 VSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKHLLPSKAQKMGKVISDQCFKDICIQGFTEDYKDIKIMVYRDPTFDISQIQSTIRNTFLDAQSQNGAKGQTTGR-----EKRVGITCHVCHEEGQIRRNCPKNKEKQKQGTK---GGSGKFCSVHKSTTHSDEEC 528
+SGDGQAAF +L+ +YN+VTDEVI A +++L T MEP +NPDD+FN+KH L S+ +KMG+ ISD+ FKDIC+QGF+EDYKDIK+MV+RDP+FD+ Q+Q+T+RN FLD Q + KGQ GR K G C C+E G +RRNCP + + + K G+ K+CSVH +TTHSDEEC
Sbjct: 109 LSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEEC 291 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1049.459.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1049.459.1 >prot_Ecto-sp9_F_contig1049.459.1 ID=prot_Ecto-sp9_F_contig1049.459.1|Name=mRNA_Ecto-sp9_F_contig1049.459.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=176bp EVSGDGQAAFKDLRDSYNKVTDEVIPATMEELMDTPMEPRQNPDDYFNQKback to top mRNA from alignment at Ecto-sp9_F_contig1049:3170..3697- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1049.459.1 ID=mRNA_Ecto-sp9_F_contig1049.459.1|Name=mRNA_Ecto-sp9_F_contig1049.459.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1049:3170..3697- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1049:3170..3697- >mRNA_Ecto-sp9_F_contig1049.459.1 ID=mRNA_Ecto-sp9_F_contig1049.459.1|Name=mRNA_Ecto-sp9_F_contig1049.459.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1049:3170..3697- (Ectocarpus species9 EcSCA_722f female)back to top |