mRNA_Ecto-sp9_F_contig10469.442.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10469.442.1
Unique NamemRNA_Ecto-sp9_F_contig10469.442.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10469.442.1 vs.
Match: Nucleolar (complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.130e-27
Identity = 110/239 (46.03%), Postives = 111/239 (46.44%), Query Frame = 3 
Query:   27 MPTPKGRNRKARRAAAASPKSAADQAPEAEAXXXXXXXEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDALPGGQGSXXXXXXXXXXXXXXAARGTHARNGKKKEPATAGGEDGGNIADLDADDFLSGGFMSMACIPDVEDKADDAERELEGGGGDDXXXXXXXDGVDGSSSDDEDXECGDGGIVGEXXXXXXXXXANASAMDLKGLAETDPEFYSFLQKEEPTLLEFDPMDSD 743
            MPTPKGRNRKARRAAAASPKSAAD APEAEA       EGK      XXXXXXXXXXX              PDALPGGQGS              AARGTH RNG                           G +                                  G D S SDDED                    ANASAMDLKGLAETDPEFYSFLQKEEPTLLEFDPMDSD
Sbjct:    1 MPTPKGRNRKARRAAAASPKSAADPAPEAEAGSSKATVEGKGAASHEXXXXXXXXXXXLEPSNKEKAASVVAPDALPGGQGSTSKGKGGGRKKDTTAARGTHGRNG---------------------------GIL----------------------------------GEDESDSDDED--------------------ANASAMDLKGLAETDPEFYSFLQKEEPTLLEFDPMDSD 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10469.442.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Nucleolar4.130e-2746.03complex associated 2 homolog n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10469contigEcto-sp9_F_contig10469:1242..3234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue4.1e-24
Seed eggNOG ortholog2880.D7G7J8
KEGG koko:K14833
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
EggNOG free text desc.domain, Protein
EggNOG OGsCOG5604@1,KOG2256@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size776
Cds size750
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10469.442.1prot_Ecto-sp9_F_contig10469.442.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10469 1242..3208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928256.932158-CDS-Ecto-sp9_F_contig10469:1241..13191622928256.932158-CDS-Ecto-sp9_F_contig10469:1241..1319Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 1242..1319 -
1692277811.549616-CDS-Ecto-sp9_F_contig10469:1241..13191692277811.549616-CDS-Ecto-sp9_F_contig10469:1241..1319Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 1242..1319 -
1622928256.945254-CDS-Ecto-sp9_F_contig10469:1658..17711622928256.945254-CDS-Ecto-sp9_F_contig10469:1658..1771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 1659..1771 -
1692277811.5597708-CDS-Ecto-sp9_F_contig10469:1658..17711692277811.5597708-CDS-Ecto-sp9_F_contig10469:1658..1771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 1659..1771 -
1622928256.9585648-CDS-Ecto-sp9_F_contig10469:2061..23041622928256.9585648-CDS-Ecto-sp9_F_contig10469:2061..2304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 2062..2304 -
1692277811.5686462-CDS-Ecto-sp9_F_contig10469:2061..23041692277811.5686462-CDS-Ecto-sp9_F_contig10469:2061..2304Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 2062..2304 -
1622928256.9684525-CDS-Ecto-sp9_F_contig10469:2892..32081622928256.9684525-CDS-Ecto-sp9_F_contig10469:2892..3208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 2893..3208 -
1692277811.5776315-CDS-Ecto-sp9_F_contig10469:2892..32081692277811.5776315-CDS-Ecto-sp9_F_contig10469:2892..3208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 2893..3208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928256.979241-UTR-Ecto-sp9_F_contig10469:3208..32341622928256.979241-UTR-Ecto-sp9_F_contig10469:3208..3234Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 3209..3234 -
1692277811.5880423-UTR-Ecto-sp9_F_contig10469:3208..32341692277811.5880423-UTR-Ecto-sp9_F_contig10469:3208..3234Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 3209..3234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10469.442.1

>prot_Ecto-sp9_F_contig10469.442.1 ID=prot_Ecto-sp9_F_contig10469.442.1|Name=mRNA_Ecto-sp9_F_contig10469.442.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=250bp
MPTPKGRNRKARRAAAASPKSAADQAPEAEAGSSKAAVEGKRAASHEKQR
RQQQRQQQLEPSNKEKAASVVAPDALPGGQGSTSKGKGGGRKKDTTAARG
THARNGKKKEPATAGGEDGGNIADLDADDFLSGGFMSMACIPDVEDKADD
AERELEGGGGDDDGSSGDNDGVDGSSSDDEDDECGDGGIVGEDESDSDDE
DANASAMDLKGLAETDPEFYSFLQKEEPTLLEFDPMDSDDSEDEDGDGGE
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mRNA from alignment at Ecto-sp9_F_contig10469:1242..3234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10469.442.1 ID=mRNA_Ecto-sp9_F_contig10469.442.1|Name=mRNA_Ecto-sp9_F_contig10469.442.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1993bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10469:1242..3234- (Ectocarpus species9 EcSCA_722f female)
ACCCACGCGACAAGCACCAACAGAAGATGCCGACACCAAAGGGGCGAAAT
CGGAAAGCAAGACGGGCGGCGGCAGCGTCCCCGAAATCTGCTGCTGACCA
AGCACCAGAGGCAGAGGCCGGGAGTTCGAAAGCAGCAGTGGAAGGCAAGA
GAGCTGCCAGCCACGAGAAGCAGCGGCGACAGCAGCAGCGGCAGCAACAG
CTCGAACCTAGCAACAAGGAGAAGGCCGCGAGTGTCGTCGCTCCTGACGC
CTTGCCAGGTGGACAGGGCTCGACATCCAAGGGGAAGGGCGGTGGCAGGA
AGAAAGACACAACAGCCGCCAGGGGAACACACGCAAGGAATGGTGAGCAA
CACAGAGGGGCGAGAGAGTGGCGGTGGTGTTGATCTCAGCGGCCAGCTTC
ATGATGGTACCGAGCGTTGCTGATTCGAACATGAGTCCTGCTTGACGTCC
TCCTGTTTGTTGTCGCATGGTCGCGGGGCACTACTGCTGTGGCCGGTTGA
TGCCGCAAGGTAAGTGTGAATGTACGACTTTGCGACTCTTTGAGCTGTGT
ACACACGCAACGGCAGGCTCTGTGCGCCGTGGAGGACGTGTCGCTGCACC
TCGAAATCGGAACTCCTTGTGGTTCCTGCTCTGTCCAGGTGTTGCAAGGA
TGGAGGTAGACACATGCGGCTACAGCTGAGCCTACACATGCACCGGCCAG
CTGTGTACTCTGGCCGGCACTCATCTACATAAGACAAGTGCCACCCCTGA
TGATTGAGCAGATACAGGACTCGAGCGGCGGAGTTTTCTGCCCCGTCAAC
GGGTGTTGCAATGCAGGAGGCAGATAACATGACGGCCTACCAGGACAACA
CCCCGTGAAAACGAATAGTGTAACTCCATGCCTCTCCTTCTCCTGACAGC
TCCCTCGAACTCCTGCTTCTCGACATCTAGGAAAGAAGAAGGAACCCGCC
ACTGCCGGCGGCGAAGATGGCGGCAACATCGCCGATTTGGATGCGGACGA
TTTCTTGAGCGGCGGCTTCATGTCCATGGCATGCATTCCCGACGTCGAGG
ACAAGGCGGACGACGCGGAACGGGAGTTGGAGGGCGGCGGCGGCGATGAT
GACGGCAGTAGCGGTGACAACGACGGCGTTGACGGCAGCAGCAGTGATGA
CGAAGACGATGAATGTGGCGACGGTAGGTGGTGATTGCAGCGGTGCAGGA
CGAGTTTCAAGACACCCGTGCCATTGCCCAGCCTGAAAAGCGTGTCTTTT
CTGTCTTGGAATTAATCTCTTGTCGAGCTTGTACAGGAAACCTTACCCGC
GATTCGTGGTTTTCTCGAATGATCCATCCGCGGGTTGGTGTGTGTTTCGC
GTGTAGGTTGCATGTTCCATATCACGATTGTTGCTGCGTCTCGACAGGTC
CGTTGTCGACCCTGGTATAACTGCATAACTCATGGCACGGTGGTACAATC
CCCTTTGTGTTAGGTGGGATAGTCGGGGAAGATGAAAGCGACAGCGACGA
CGAAGACGCAAACGCTAGCGCGATGGATCTGAAGGGGCTGGCGGAAACCG
ACCCAGAGTTTTACAGTTTTCTGCAGGTAGGTTCGTTTTGGCCCCGCGGA
GGCTTTCTTTTTGGAAGGAATGGGGGCGGGAGCGGGGGGAACGAGCCGCC
TACGATAGGTAGCTACAATGCCCAACCCATTGTGCCCGTTTTCTTGATCT
AGAGGACAGAAAGTACGGATGTTGCGGACGCACTGAATACAGATCGCAAT
GGCTGTTTGCTTAAGTCAACAGCACCAACAATAAATAGTGTAAGACACGA
ATTCATGGAAGAGAATCCCCTCCTACCACTCACGTTTGGCCATGATGTGC
ATGCATGCTCTTCGCGATATCGAGTGCCCCCCCCGTACGTTCGATTGACC
CACCGACCGCAACAGAAAGAGGAACCTACCTTGCTTGAGTTCGACCCGAT
GGACAGCGACGACTCCGAGGATGAGGACGGAGACGGAGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10469:1242..3234-

>mRNA_Ecto-sp9_F_contig10469.442.1 ID=mRNA_Ecto-sp9_F_contig10469.442.1|Name=mRNA_Ecto-sp9_F_contig10469.442.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1500bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10469:1242..3234- (Ectocarpus species9 EcSCA_722f female)
ATGCCGACACCAAAGGGGCGAAATCGGAAAGCAAGACGGGCGGCGGCAGC
GTCCCCGAAATCTGCTGCTGACCAAGCACCAGAGGCAGAGGCCGGGAGTT
CGAAAGCAGCAGTGGAAGGCAAGAGAGCTGCCAGCCACGAGAAGCAGCGG
CGACAGCAGCAGCGGCAGCAACAGCTCGAACCTAGCAACAAGGAGAAGGC
CGCGAGTGTCGTCGCTCCTGACGCCTTGCCAGGTGGACAGGGCTCGACAT
CCAAGGGGAAGGGCGGTGGCAGGAAGAAAGACACAACAGCCGCCAGGGGA
ACACACGCAAGGAATGATGCCGACACCAAAGGGGCGAAATCGGAAAGCAA
GACGGGCGGCGGCAGCGTCCCCGAAATCTGCTGCTGACCAAGCACCAGAG
GCAGAGGCCGGGAGTTCGAAAGCAGCAGTGGAAGGCAAGAGAGCTGCCAG
CCACGAGAAGCAGCGGCGACAGCAGCAGCGGCAGCAACAGCTCGAACCTA
GCAACAAGGAGAAGGCCGCGAGTGTCGTCGCTCCTGACGCCTTGCCAGGT
GGACAGGGCTCGACATCCAAGGGGAAGGGCGGTGGCAGGAAGAAAGACAC
AACAGCCGCCAGGGGAACACACGCAAGGAATGGAAAGAAGAAGGAACCCG
CCACTGCCGGCGGCGAAGATGGCGGCAACATCGCCGATTTGGATGCGGAC
GATTTCTTGAGCGGCGGCTTCATGTCCATGGCATGCATTCCCGACGTCGA
GGACAAGGCGGACGACGCGGAACGGGAGTTGGAGGGCGGCGGCGGCGATG
ATGACGGCAGTAGCGGTGACAACGACGGCGTTGACGGCAGCAGCAGTGAT
GACGAAGACGATGAATGTGGCGACGGAAAGAAGAAGGAACCCGCCACTGC
CGGCGGCGAAGATGGCGGCAACATCGCCGATTTGGATGCGGACGATTTCT
TGAGCGGCGGCTTCATGTCCATGGCATGCATTCCCGACGTCGAGGACAAG
GCGGACGACGCGGAACGGGAGTTGGAGGGCGGCGGCGGCGATGATGACGG
CAGTAGCGGTGACAACGACGGCGTTGACGGCAGCAGCAGTGATGACGAAG
ACGATGAATGTGGCGACGGTGGGATAGTCGGGGAAGATGAAAGCGACAGC
GACGACGAAGACGCAAACGCTAGCGCGATGGATCTGAAGGGGCTGGCGGA
AACCGACCCAGAGTTTTACAGTTTTCTGCAGGTGGGATAGTCGGGGAAGA
TGAAAGCGACAGCGACGACGAAGACGCAAACGCTAGCGCGATGGATCTGA
AGGGGCTGGCGGAAACCGACCCAGAGTTTTACAGTTTTCTGCAGAAAGAG
GAACCTACCTTGCTTGAGTTCGACCCGATGGACAGCGACGACTCCGAGGA
TGAGGACGGAGACGGAGGGGAGAAAGAGGAACCTACCTTGCTTGAGTTCG
ACCCGATGGACAGCGACGACTCCGAGGATGAGGACGGAGACGGAGGGGAG
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