mRNA_Ecto-sp9_F_contig10452.434.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10452.434.1
Unique NamemRNA_Ecto-sp9_F_contig10452.434.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10452.434.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHW2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.180e-12
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = -3 
Query:  320 KGGRGGGRRITRGPGSTIPVSGGASDRKSPALGPVRPCFYR 442
            +GG GGGRR+TR PGSTI VSGGASDRK PALGPVRPCF R
Sbjct:   84 QGGEGGGRRLTRAPGSTILVSGGASDRKPPALGPVRPCFCR 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10452.434.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.180e-1282.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10452contigEcto-sp9_F_contig10452:3916..4359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928255.2461443-CDS-Ecto-sp9_F_contig10452:3915..43591622928255.2461443-CDS-Ecto-sp9_F_contig10452:3915..4359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10452 3916..4359 +
1692277810.8261964-CDS-Ecto-sp9_F_contig10452:3915..43591692277810.8261964-CDS-Ecto-sp9_F_contig10452:3915..4359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10452 3916..4359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10452.434.1prot_Ecto-sp9_F_contig10452.434.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10452 3916..4359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10452.434.1

>prot_Ecto-sp9_F_contig10452.434.1 ID=prot_Ecto-sp9_F_contig10452.434.1|Name=mRNA_Ecto-sp9_F_contig10452.434.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
YIPDSRKSNTARSPTRKQTWTSRLFSPFFLHTVPPHTRRQSRLAASAAAA
ATATATAAAATAPATPPQKTTRKNEPNFPLLGTTSAALHSYIVRKSTPLP
YGDARVNDKNTGARVPGPETSCPTHPRRPGWYCRGPVLSDAPPPSPP*
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mRNA from alignment at Ecto-sp9_F_contig10452:3916..4359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10452.434.1 ID=mRNA_Ecto-sp9_F_contig10452.434.1|Name=mRNA_Ecto-sp9_F_contig10452.434.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10452:3916..4359+ (Ectocarpus species9 EcSCA_722f female)
TATATACCGGACAGTCGGAAAAGCAACACGGCGCGGTCGCCAACACGGAA
ACAAACCTGGACCAGTCGTCTCTTCTCGCCCTTCTTCCTCCACACCGTGC
CACCCCACACCCGACGACAGTCGCGGCTTGCCGCCTCCGCCGCCGCAGCA
GCAACAGCAACAGCAACAGCAGCAGCGGCAACAGCACCAGCAACGCCACC
ACAAAAAACGACAAGAAAAAACGAGCCGAATTTTCCGCTTCTCGGCACCA
CCTCCGCCGCCCTCCACAGCTACATTGTACGAAAATCCACGCCACTTCCT
TACGGAGACGCACGCGTCAACGATAAAAACACGGGCGCACGGGTCCCAGG
GCCGGAGACTTCCTGTCCGACGCACCCCCGGAGACCGGGATGGTACTGCC
GGGGCCCCGTGTTATCCGACGCCCCCCCCCCCTCCCCCCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10452:3916..4359+

>mRNA_Ecto-sp9_F_contig10452.434.1 ID=mRNA_Ecto-sp9_F_contig10452.434.1|Name=mRNA_Ecto-sp9_F_contig10452.434.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10452:3916..4359+ (Ectocarpus species9 EcSCA_722f female)
TATATACCGGACAGTCGGAAAAGCAACACGGCGCGGTCGCCAACACGGAA
ACAAACCTGGACCAGTCGTCTCTTCTCGCCCTTCTTCCTCCACACCGTGC
CACCCCACACCCGACGACAGTCGCGGCTTGCCGCCTCCGCCGCCGCAGCA
GCAACAGCAACAGCAACAGCAGCAGCGGCAACAGCACCAGCAACGCCACC
ACAAAAAACGACAAGAAAAAACGAGCCGAATTTTCCGCTTCTCGGCACCA
CCTCCGCCGCCCTCCACAGCTACATTGTACGAAAATCCACGCCACTTCCT
TACGGAGACGCACGCGTCAACGATAAAAACACGGGCGCACGGGTCCCAGG
GCCGGAGACTTCCTGTCCGACGCACCCCCGGAGACCGGGATGGTACTGCC
GGGGCCCCGTGTTATCCGACGCCCCCCCCCCCTCCCCCCCTTGATATATA
CCGGACAGTCGGAAAAGCAACACGGCGCGGTCGCCAACACGGAAACAAAC
CTGGACCAGTCGTCTCTTCTCGCCCTTCTTCCTCCACACCGTGCCACCCC
ACACCCGACGACAGTCGCGGCTTGCCGCCTCCGCCGCCGCAGCAGCAACA
GCAACAGCAACAGCAGCAGCGGCAACAGCACCAGCAACGCCACCACAAAA
AACGACAAGAAAAAACGAGCCGAATTTTCCGCTTCTCGGCACCACCTCCG
CCGCCCTCCACAGCTACATTGTACGAAAATCCACGCCACTTCCTTACGGA
GACGCACGCGTCAACGATAAAAACACGGGCGCACGGGTCCCAGGGCCGGA
GACTTCCTGTCCGACGCACCCCCGGAGACCGGGATGGTACTGCCGGGGCC
CCGTGTTATCCGACGCCCCCCCCCCCTCCCCCCCTTGA
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