mRNA_Ecto-sp9_F_contig10451.433.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10451.433.1
Unique NamemRNA_Ecto-sp9_F_contig10451.433.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 2.320e-57
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            AFEVFPSDENMHFWKVLV+GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDV+SCVYG L
Sbjct:  564 AFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVMSCVYGLL 654          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: UBC (core domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAL7_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 1.170e-32
Identity = 46/91 (50.55%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            + E++P D ++ FW+ ++ GP+ TPY  G W++ + FP  YP+ AP+VRF+TPIRHCN+N +G+VCH++F R+WT +T++  VLSCVYG L
Sbjct:  126 SIEIYPCDADIGFWRAILQGPSDTPYHNGVWLVYVLFPSTYPAEAPEVRFVTPIRHCNVNQYGKVCHSIFTRNWTSDTSIHQVLSCVYGLL 216          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXV2_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 1.230e-31
Identity = 44/91 (48.35%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            + +++P + ++ FW++++ GP+ TPY  G W++ + FP GYPS AP+VRF+TPIRHCN+N +G+VCH++F R+WT +T++  +LSCVYG +
Sbjct:  670 SIDIYPCESDISFWRMIIEGPSETPYENGVWLVYLLFPAGYPSEAPEVRFVTPIRHCNVNQYGKVCHSIFTRNWTSDTSIHQLLSCVYGLM 760          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO)

HSP 1 Score: 125 bits (315), Expect = 1.240e-31
Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            + EVFPS E++ FWK+L+ GP  TPY+ G W+L    PP YP+  P+VRF+TPIRHCN+N+HGRVCH++ DR++T +TTVL V+ C+YG L
Sbjct:  961 SIEVFPS-EDLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRVCHSILDRNYTADTTVLSVMHCIYGLL 1050          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MEQ6_RETFI)

HSP 1 Score: 125 bits (313), Expect = 2.320e-31
Identity = 49/91 (53.85%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            A +++P +++M FW++++ GP STPY  G W+  M FPP YP  AP++RF+T I+HCNINS+GRVCH++F R++TP+TTV  +L CVYG L
Sbjct: 1040 AVDIYPCEKDMSFWRLVMEGPDSTPYAGGAWLAYMEFPPNYPEQAPEMRFVTSIKHCNINSYGRVCHSIFGRNYTPDTTVATILQCVYGLL 1130          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMK5_POLGL)

HSP 1 Score: 120 bits (301), Expect = 7.120e-31
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 AFEVFPS--DENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            A++VFP    + +  W+V++ GPA +PY  GCW+L   FPP YP+ AP VRF+T IRHCN+N+HGRVCH++ DR+W  +T++  VL+CVYG L
Sbjct:  150 AYDVFPGVGADALSCWRVIMEGPADSPYAGGCWLLYALFPPEYPNKAPDVRFVTRIRHCNVNAHGRVCHSILDRNWAADTSMATVLNCVYGLL 242          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Hokovirus HKV1 TaxID=1977638 RepID=A0A1V0SEK3_9VIRU)

HSP 1 Score: 118 bits (296), Expect = 4.580e-29
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    7 EVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            +++ +D++++FWKVL NGP  TPY+ GCW+  + FP  YP   P +RF TPI+HCNIN++GRVCH++ DR++TPN  +  +L C+YG L
Sbjct: 1193 DIYINDDDIYFWKVLFNGPDGTPYKNGCWLAYIQFPNNYPLSPPNIRFHTPIKHCNINNYGRVCHSILDRNYTPNIGINTILHCIYGLL 1281          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HFP5_9ALVE)

HSP 1 Score: 118 bits (296), Expect = 4.620e-29
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   10 VFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            + PS E++ FWK+LV GP  TPY  G W+  + FPP +P+ AP+VRF+TPI HCN+N HGR+CHA+ DR W  +T++  VL CV+G L
Sbjct: 1882 ILPSSEDLTFWKLLVTGPEGTPYGGGNWLCYVSFPPDFPARAPEVRFVTPILHCNVNRHGRICHAVLDRDWVASTSIRTVLDCVFGLL 1969          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: ubiquitin-conjugating (enzyme E2 T-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06107)

HSP 1 Score: 114 bits (285), Expect = 4.910e-29
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            A ++FP + N+ FW++L+ GPA TPY  G + L   FP  YP+V P VRFITPI HCN+N+ GR+CH++FDR +T +T +  +L+CV+G L
Sbjct:   70 AIQIFPCENNIGFWRILLLGPADTPYENGVYSLYAEFPKDYPAVPPIVRFITPIYHCNVNASGRICHSVFDREYTSDTPITTILTCVFGLL 160          
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Anaphase-promoting (complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI)

HSP 1 Score: 116 bits (290), Expect = 3.020e-28
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
            AF++FP  +++ FWKV V+GP  TPY  G W++ + FPP +P   P+VRFITPI+HCNIN HGRVCH++  R+WT  T    +L  +YG L
Sbjct: 3257 AFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRVCHSILGRNWTRETRARSLLESIYGLL 3347          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.320e-5796.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
UBC1.170e-3250.55core domain-containing protein (Fragment) n=1 Tax=... [more]
Uncharacterized1.230e-3148.35protein n=1 Tax=Arcella intermedia TaxID=1963864 R... [more]
Hypothetical1.240e-3157.14protein (Fragment) n=1 Tax=Pyrodinium bahamense Ta... [more]
Uncharacterized2.320e-3153.85protein (Fragment) n=1 Tax=Reticulomyxa filosa Tax... [more]
Hypothetical7.120e-3152.69protein (Fragment) n=2 Tax=Polarella glacialis Tax... [more]
E24.580e-2950.56ubiquitin-conjugating enzyme n=1 Tax=Hokovirus HKV... [more]
Uncharacterized4.620e-2953.41protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169... [more]
ubiquitin-conjugating4.910e-2950.55enzyme E2 T-like n=1 Tax=Saccoglossus kowalevskii ... [more]
Anaphase-promoting3.020e-2851.65complex subunit 11 n=2 Tax=Symbiodinium microadria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10451contigEcto-sp9_F_contig10451:2650..3784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D7FGP8
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10451.433.1prot_Ecto-sp9_F_contig10451.433.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10451 2650..3754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928255.1609428-CDS-Ecto-sp9_F_contig10451:2649..27301622928255.1609428-CDS-Ecto-sp9_F_contig10451:2649..2730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10451 2650..2730 -
1692277810.7961166-CDS-Ecto-sp9_F_contig10451:2649..27301692277810.7961166-CDS-Ecto-sp9_F_contig10451:2649..2730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10451 2650..2730 -
1622928255.178996-CDS-Ecto-sp9_F_contig10451:3592..37541622928255.178996-CDS-Ecto-sp9_F_contig10451:3592..3754Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10451 3593..3754 -
1692277810.8080807-CDS-Ecto-sp9_F_contig10451:3592..37541692277810.8080807-CDS-Ecto-sp9_F_contig10451:3592..3754Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10451 3593..3754 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928255.1985521-UTR-Ecto-sp9_F_contig10451:3754..37841622928255.1985521-UTR-Ecto-sp9_F_contig10451:3754..3784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10451 3755..3784 -
1692277810.8170524-UTR-Ecto-sp9_F_contig10451:3754..37841692277810.8170524-UTR-Ecto-sp9_F_contig10451:3754..3784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10451 3755..3784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10451.433.1

>prot_Ecto-sp9_F_contig10451.433.1 ID=prot_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp
MHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNIN
SHGRVCHALFDRSWTPNTTVLDVLSCVYGKL
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mRNA from alignment at Ecto-sp9_F_contig10451:2650..3784-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10451.433.1 ID=mRNA_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10451:2650..3784- (Ectocarpus species9 EcSCA_722f female)
GCGTTCGAGGTGTTCCCGAGCGACGAGAACATGCACTTCTGGAAGGTTCT CGTCAACGGCCCGGCGAGCACCCCCTACAGGGAAGGGTGCTGGATGCTCA GCATGTTCTTCCCGCCCGGCTACCCCTCCGTGGCCCCCAAGGTCCGCTTC ATCACGCCCATCCGCCACTGCAATATCAACTCCCACGGAAGGGTAGGTGG GGTGATGGTTGTTGCTGTTGTTTGTCAACGAGAACGACAACGCTGTTTGT CGCCCCACGTTCCGGGTGTGCTGGTCGGGGGGGCGGCCTGAAGGCCGCCA ATCGAAAGCTTTGGGAGAAGAGCCGGCAACGTTCGCGTGCTTGCACTCGC TTTTGACGTTTGAGTGCTCCCTGGCTGCTGCCTCAAGGTTGCTCTTCTCT TGCACCAGAAGTTTTTAAGGAACGACAGAGAACCGTGAAAGCCGACGGAG AAGCCGGGTTGCATCGTACCGCCGCGTGATTCGCCAGAACGCGGTTCACC GCGGGTTTGGCCAATCAGCGTGCGGCGTCGGGGTTAGGTACCTCCCTAGT CACCCCCTTGCGGTATACTGTACCGTTAATTGTTGCCAGTACACCGCTCC TGCCGGTTGCCCTATCTCATCGTACTATTCTCTCATAATGGCATTCATCA ATCTGATTTAAATTAGGATTTGTTCGTGGGTTGGAAGGGGATGTACGTGG TCATCGGGGTATCCTCGGGACCTGTTTTTCGACATGCGTACGATCAGGAC GCAATACGGTCGTGGCTCCGTTGTAAGACGGTGGCATGACAAAGGCCCTC GACCCTCTTACATTGGATCCCCTTCATATATCGGTATTAGAGGGTACCCA ACTATGCCACAGAGGGTCGAGTCTGTAGCAACCGATTTCGACTCTCTTAT ATCCGAGCCCCCTCTTGAACCGGAATAAGCGGGTACTCAAGTATGCTATG GCGCGTCGAGTCCATGACAAGCCATTTCGACACTCGTATGTCGGAGCCAC GACTGTGTCCAAACCTCCCTCCCACTGAAGGGCCGCCTCCGTATGTTCTT CCAGGTGTGTCATGCGCTATTCGACCGGTCATGGACCCCCAACACGACGG TTCTGGACGTCCTGTCGTGTGTCTACGGTAAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10451:2650..3784-

>mRNA_Ecto-sp9_F_contig10451.433.1 ID=mRNA_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10451:2650..3784- (Ectocarpus species9 EcSCA_722f female)
ATGCACTTCTGGAAGGTTCTCGTCAACGGCCCGGCGAGCACCCCCTACAG
GGAAGGGTGCTGGATGCTCAGCATGTTCTTCCCGCCCGGCTACCCCTCCG
TGGCCCCCAAGGTCCGCTTCATCACGCCCATCCGCCACTGCAATATCAAC
TCCCACGGAAGGATGCACTTCTGGAAGGTTCTCGTCAACGGCCCGGCGAG
CACCCCCTACAGGGAAGGGTGCTGGATGCTCAGCATGTTCTTCCCGCCCG
GCTACCCCTCCGTGGCCCCCAAGGTCCGCTTCATCACGCCCATCCGCCAC
TGCAATATCAACTCCCACGGAAGGGTGTGTCATGCGCTATTCGACCGGTC
ATGGACCCCCAACACGACGGTTCTGGACGTCCTGTCGTGTGTCTACGGTA
AGCTCGTGTGTCATGCGCTATTCGACCGGTCATGGACCCCCAACACGACG
GTTCTGGACGTCCTGTCGTGTGTCTACGGTAAGCTC
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