mRNA_Ecto-sp9_F_contig10451.433.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI) HSP 1 Score: 198 bits (503), Expect = 2.320e-57 Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
AFEVFPSDENMHFWKVLV+GPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDV+SCVYG L
Sbjct: 564 AFEVFPSDENMHFWKVLVHGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVMSCVYGLL 654
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: UBC (core domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAL7_9EUKA) HSP 1 Score: 124 bits (310), Expect = 1.170e-32 Identity = 46/91 (50.55%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
+ E++P D ++ FW+ ++ GP+ TPY G W++ + FP YP+ AP+VRF+TPIRHCN+N +G+VCH++F R+WT +T++ VLSCVYG L
Sbjct: 126 SIEIYPCDADIGFWRAILQGPSDTPYHNGVWLVYVLFPSTYPAEAPEVRFVTPIRHCNVNQYGKVCHSIFTRNWTSDTSIHQVLSCVYGLL 216
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KXV2_9EUKA) HSP 1 Score: 125 bits (315), Expect = 1.230e-31 Identity = 44/91 (48.35%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
+ +++P + ++ FW++++ GP+ TPY G W++ + FP GYPS AP+VRF+TPIRHCN+N +G+VCH++F R+WT +T++ +LSCVYG +
Sbjct: 670 SIDIYPCESDISFWRMIIEGPSETPYENGVWLVYLLFPAGYPSEAPEVRFVTPIRHCNVNQYGKVCHSIFTRNWTSDTSIHQLLSCVYGLM 760
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO) HSP 1 Score: 125 bits (315), Expect = 1.240e-31 Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
+ EVFPS E++ FWK+L+ GP TPY+ G W+L PP YP+ P+VRF+TPIRHCN+N+HGRVCH++ DR++T +TTVL V+ C+YG L
Sbjct: 961 SIEVFPS-EDLFFWKLLLEGPEGTPYQGGVWVLYCHLPPEYPACPPQVRFVTPIRHCNVNAHGRVCHSILDRNYTADTTVLSVMHCIYGLL 1050
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MEQ6_RETFI) HSP 1 Score: 125 bits (313), Expect = 2.320e-31 Identity = 49/91 (53.85%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
A +++P +++M FW++++ GP STPY G W+ M FPP YP AP++RF+T I+HCNINS+GRVCH++F R++TP+TTV +L CVYG L
Sbjct: 1040 AVDIYPCEKDMSFWRLVMEGPDSTPYAGGAWLAYMEFPPNYPEQAPEMRFVTSIKHCNINSYGRVCHSIFGRNYTPDTTVATILQCVYGLL 1130
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LMK5_POLGL) HSP 1 Score: 120 bits (301), Expect = 7.120e-31 Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query: 1 AFEVFPS--DENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
A++VFP + + W+V++ GPA +PY GCW+L FPP YP+ AP VRF+T IRHCN+N+HGRVCH++ DR+W +T++ VL+CVYG L
Sbjct: 150 AYDVFPGVGADALSCWRVIMEGPADSPYAGGCWLLYALFPPEYPNKAPDVRFVTRIRHCNVNAHGRVCHSILDRNWAADTSMATVLNCVYGLL 242
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Hokovirus HKV1 TaxID=1977638 RepID=A0A1V0SEK3_9VIRU) HSP 1 Score: 118 bits (296), Expect = 4.580e-29 Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 7 EVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
+++ +D++++FWKVL NGP TPY+ GCW+ + FP YP P +RF TPI+HCNIN++GRVCH++ DR++TPN + +L C+YG L
Sbjct: 1193 DIYINDDDIYFWKVLFNGPDGTPYKNGCWLAYIQFPNNYPLSPPNIRFHTPIKHCNINNYGRVCHSILDRNYTPNIGINTILHCIYGLL 1281
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HFP5_9ALVE) HSP 1 Score: 118 bits (296), Expect = 4.620e-29 Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 10 VFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
+ PS E++ FWK+LV GP TPY G W+ + FPP +P+ AP+VRF+TPI HCN+N HGR+CHA+ DR W +T++ VL CV+G L
Sbjct: 1882 ILPSSEDLTFWKLLVTGPEGTPYGGGNWLCYVSFPPDFPARAPEVRFVTPILHCNVNRHGRICHAVLDRDWVASTSIRTVLDCVFGLL 1969
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: ubiquitin-conjugating (enzyme E2 T-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06107) HSP 1 Score: 114 bits (285), Expect = 4.910e-29 Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
A ++FP + N+ FW++L+ GPA TPY G + L FP YP+V P VRFITPI HCN+N+ GR+CH++FDR +T +T + +L+CV+G L
Sbjct: 70 AIQIFPCENNIGFWRILLLGPADTPYENGVYSLYAEFPKDYPAVPPIVRFITPIYHCNVNASGRICHSVFDREYTSDTPITTILTCVFGLL 160
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Match: Anaphase-promoting (complex subunit 11 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E8K8_SYMMI) HSP 1 Score: 116 bits (290), Expect = 3.020e-28 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 1 AFEVFPSDENMHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINSHGRVCHALFDRSWTPNTTVLDVLSCVYGKL 273
AF++FP +++ FWKV V+GP TPY G W++ + FPP +P P+VRFITPI+HCNIN HGRVCH++ R+WT T +L +YG L
Sbjct: 3257 AFDIFPGCDDVGFWKVTVSGPDGTPYAGGVWLIYVVFPPEFPVEPPEVRFITPIKHCNINQHGRVCHSILGRNWTRETRARSLLESIYGLL 3347 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10451.433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10451.433.1 >prot_Ecto-sp9_F_contig10451.433.1 ID=prot_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp MHFWKVLVNGPASTPYREGCWMLSMFFPPGYPSVAPKVRFITPIRHCNINback to top mRNA from alignment at Ecto-sp9_F_contig10451:2650..3784- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10451.433.1 ID=mRNA_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10451:2650..3784- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10451:2650..3784- >mRNA_Ecto-sp9_F_contig10451.433.1 ID=mRNA_Ecto-sp9_F_contig10451.433.1|Name=mRNA_Ecto-sp9_F_contig10451.433.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10451:2650..3784- (Ectocarpus species9 EcSCA_722f female)back to top |