mRNA_Ecto-sp9_F_contig1045.427.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1045.427.1
Unique NamemRNA_Ecto-sp9_F_contig1045.427.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1045.427.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G658_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 1.460e-98
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDDGPHTV 465
            MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDDGPHTV
Sbjct:    1 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDDGPHTV 155
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BLAST of mRNA_Ecto-sp9_F_contig1045.427.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L5_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 4.100e-95
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    1 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDDGPHTV 465
            MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAE+KKPGGSNGG+GPAAG SGEGGDDGPHTV
Sbjct:   80 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEIKKPGGSNGGSGPAAGRSGEGGDDGPHTV 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1045.427.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.460e-98100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.100e-9598.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1045contigEcto-sp9_F_contig1045:4568..9684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005270.1
Exons4
Model size1321
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1045.427.1prot_Ecto-sp9_F_contig1045.427.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1045 4568..8831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.4751692-CDS-Ecto-sp9_F_contig1045:4567..46451622928254.4751692-CDS-Ecto-sp9_F_contig1045:4567..4645Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 4568..4645 +
1692277810.5426927-CDS-Ecto-sp9_F_contig1045:4567..46451692277810.5426927-CDS-Ecto-sp9_F_contig1045:4567..4645Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 4568..4645 +
1622928254.4911125-CDS-Ecto-sp9_F_contig1045:6954..70891622928254.4911125-CDS-Ecto-sp9_F_contig1045:6954..7089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 6955..7089 +
1692277810.5521252-CDS-Ecto-sp9_F_contig1045:6954..70891692277810.5521252-CDS-Ecto-sp9_F_contig1045:6954..7089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 6955..7089 +
1622928254.5086544-CDS-Ecto-sp9_F_contig1045:7746..78871622928254.5086544-CDS-Ecto-sp9_F_contig1045:7746..7887Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 7747..7887 +
1692277810.5609984-CDS-Ecto-sp9_F_contig1045:7746..78871692277810.5609984-CDS-Ecto-sp9_F_contig1045:7746..7887Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 7747..7887 +
1622928254.5262792-CDS-Ecto-sp9_F_contig1045:8717..88311622928254.5262792-CDS-Ecto-sp9_F_contig1045:8717..8831Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 8718..8831 +
1692277810.5700316-CDS-Ecto-sp9_F_contig1045:8717..88311692277810.5700316-CDS-Ecto-sp9_F_contig1045:8717..8831Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 8718..8831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.5407434-UTR-Ecto-sp9_F_contig1045:8831..96841622928254.5407434-UTR-Ecto-sp9_F_contig1045:8831..9684Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 8832..9684 +
1692277810.5788083-UTR-Ecto-sp9_F_contig1045:8831..96841692277810.5788083-UTR-Ecto-sp9_F_contig1045:8831..9684Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 8832..9684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1045.427.1

>prot_Ecto-sp9_F_contig1045.427.1 ID=prot_Ecto-sp9_F_contig1045.427.1|Name=mRNA_Ecto-sp9_F_contig1045.427.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=156bp
MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTET
AEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGR
WRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGGDD
GPHTV*
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mRNA from alignment at Ecto-sp9_F_contig1045:4568..9684+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1045.427.1 ID=mRNA_Ecto-sp9_F_contig1045.427.1|Name=mRNA_Ecto-sp9_F_contig1045.427.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5117bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:4568..9684+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGACAGGAAAGACGCCACGTCGAGCTCCGACAACCTCCTCCCGAC
AGACAAATTGGAGAACGGCCTGCGACATGTGAGTTATTCTTTAGGAAATG
CACGCCATCTACATTATTCGAGCGCAGCAGGGGGATGCATTCGACTCCCT
CTGGAACACTGCTGCTATGATGACGATTGATGATGTGAGGAAAGCACGAC
AGCCGGAGGTGCGACGTAAGGGCGCGTGTGTTCCTGCGTCGATTGCAATA
TACTACGAAGGGTGTCTGCAGCTTCCTTGAATTTCGCCGTTCATGACTAC
AGGCCAAAATGCACCCAAAAAGGCAGTGGCCTTTGTACATCAGTACACCC
CAGTGCCAGTACGTGCAGTTCTCCGACTGAGCACACGCCCAACGTTTTCC
TCACAAGTCACATAAAAGGGCTGTTTCTCTACTGCTGTCGACCGAAATTG
TGGTCGGTAGCGGGTCAAGGGGATGGGCCGGCTCCACGTGCAAAACCAAC
CTACCGAGCGCGCCGCGTTCTGTAGGTTCCACCGCCGTTGTTTTGGTGTG
CTCGCTCACGCTCACAGCGCTCGGATCATTCGCCATCGCAGGTTTTTTCG
ATGAAGTAAACATGTTGGATTAAGCATACAATCGGGGAAGTTGGGTTAGG
AGGGCGGTCCGCTCGGATCCACCAAGGGCCTAGACAGAGATGCACTCGGC
ACGGTTAGTCGCCAACCACGGATACACCGTCCGCGTACATTCCAAATGAG
AAAGACAACACACGAGCAGCACTGGCACTACTGCTGCAGCAATACCTCCG
ACGCCGATATCTACGTATACTGCTGTACTCCATTTAGCCTGTGCACTGAT
TTAATGATTCATATTTTATTGTAATATGACCCAACGAATCCATCTCTATC
TTGTACAGAGTCTAAGATAGATTATAATCGCAGTAAGTACGTGTGCCTGA
AGTTTGCGGCTCATCGCGCACCCCGAAGCCGAACTCTTTATTTCAAATTC
TCCCTAACCAACGTGCGAGACACGCTTCTTCCAGACCTTAAACAATTACC
ACTTGCCATACGTATTCGAGCGGACCTTCAAGACTGGTGCATCCGCTCCC
CGCTGCAGCGTCAAATACTATCACCAACGACGCCAGAGGGCGATCACACA
CGCCGTGACGCACTGGCCTTGCTACAGCAATACCGCCGAAGGATCGGCAC
CTATCAGTACCGCCGCAGGCGTAAATGGACAATGATGGTGGCAGACACAA
AAACACTCGATATTGTAGATAGAGCCCATCGGGCAGCGCAATGTGGAATT
AAGTGGCTGGAGAAGTTCAAACAGAGCCAGCCCTCACCACTCTCTCGCGC
AGACCGTTTCTCAACGTCTCAGTCTCATGACTCGCTTGCTGGAGGGGACG
TCGTTTGTTTGCTTCCCTCGTCCCCCGCCCTATTATTGTCCGGCGAAGGA
CATCATACCTATCGTTCTGAGTCTCACGTGGCCAATGCATCAACAGCACC
AACGCCTCGACTTCGCTCTGCTTTGCTGCTGCTGACTCCTATCTATCTTT
TATTTCCACCCATCATGGTGAGATTTGACAAGGGCAAGACGAGCGCATCG
TCAAGACTCCTTGTTGTGTAGCCAGAGAGCGGGCACCAGGTCTGCTGTTA
CGCCGTGCTTTCACATACGGAAGGGATTGGGCCACGGCGGATGTGTTTCT
GTGCATGTGCGAGACTTAGCTGAGTGATAGATACACCTCCGCTTTCTGCG
CTGACTTCCGTATCTTCCGTGTGGGATCTCCGCTTCATGTTCCCGCTAAA
GTTTGTTGACAACTCCCGGGGTTAGGATAAGTGATCTCCTACCATTTTCC
GGGACAAACGCCTGTGTACTTATGCACGACCATCTCTTGTCCGAGCGCAC
CACCACACCGGTGTTTACGAAGGTACCTATAGTTCTTCCTTCTCAGAACC
CAACAGATGGTCAAAATCGGTGCTCTGTGTAGGTATCTTGTGTTCTGGTG
GAAAAAGGAGGGTCATTTTGGCCTCCCGGAATATAGGCGGACGAGGGCAC
CCTGCATCACGTTGGAAGAGACCAGTTTTTTGAGCGGTTTTTTTTTTCCT
CCTGGGATAAAGGGGAGAAAAAGGTATCGGCTTCACCGCTAATTAGTATT
GGGGCGTGTGCGATAACCTGCATACCTGCGTACGCTCAAGCTACGCCACA
AGCCTCCCTTCCACACACCCCGAGAAACACACAACACCAGAGAATGCTGC
TGGGTGGACCATTTTTCCGTGATGCAAAGCCGTGTGGTAATTCTGCGAAA
CGCTCCCCCTGTCAGTTCCAATACGTTAAGCTCCCGCTTCCCCACTTCGG
TCCCTCGGCGGCTCGCCTCCCTTCCCCGTGGAGCCAGGCGAAGATGATCT
TCGCCACGGGCTGGGCTAGCGTTGCGGCGACGTACCGCGACTTGGAGAGG
ACGGAGACAGCCGAGAAGATCAAGGAGGGCACGGTCAACCTCGTCGACCG
CAGCATGGACGGCCTCAGCAAGGTGTGTGTGTCGGCGGAGGGCCTCGAAC
GCACGAGTACTTAGTATTTCGTATCTACCAATCTGTTCGGAAGTATAGGG
GCCATTAGGACGATCAATTTAGTGTTCGAACGGTCGTTATATTTCCGACC
AGAGTTGTGTTTTTCTTAAAGCGCGATGTCTGCAGTGGTGGACAGCTGCA
GTTTGGAAGGTGGAGGCTTTCTTTTTCTAGGCCTTAAGGGGTTCCTTTAG
CGTTGGGTTGTTTCGAAGGCACACGGCTGTGTGCGCTCGTCTACGGCGGT
TCGGAAGGTGAAGAATGTTTGTTTACTGCCTTACGGTTCCTCACGTGCGT
TGATCTGGTTTCATGCAGTGAATCAGTCGCGAAACAGCAGCTTGTAGCTT
TTCGTCTACGGTGGTACAACCATAGCCCTTTGTCGCGCAAGAAGCAGCAT
GACAAGGCAACAGTTGCTCTGCTTCACGTCGAAAGTGTGTCTTTCGCACG
TTGTGTACAGCAGTTACTTAAATGGACACGCGGGCACAAGCGGGGGTGGT
CTGTTTGTGTGTATCCATGATAATACTAATGATAGGAAGACCGCACGTGC
CACATGCCGCCGCTTTGCGCTTCCACTTATGTCTTGCGTGCTCGGGGATT
TGGCGCTGTTTCTTGTTCGTGATGAAAAGGTGGGATGTAAGATATCGGAG
ACGACTGAAAAGGGGGTGCAAGTGGTCGGGGCCAAGATGGAGGAGGCAGC
CCCTACCCTCGGAAGGTGGCGAGACGAGGTGGTGATCGCTAGCGAGAGAG
GCTTCGCCGCCGCCAAAGATGTGAGTTTAGGACGTTTCCTCCGGACACGA
GGCGTCGAAAATGTGCCCACCCGGAGGACTGCGTGCAGAGCATACCCATA
TAGGAGGCTTCGAAAATGCCCACCCGGAGGAATGCTTGCAGAACATAGTT
TACCCAGAGGTATCCGAGGACAGGGACGATGGCCGGTCTCCGAAGGGGTA
GGTGGTATACAGATGGCGCCCACAGCTAAGAACTTGAGCACCATTCGTGA
GCTTGGTTAAGAACCCCTACACGAAAACCTATGTAGCGACCGTTGGTAGC
CCACAGGAAGAGCTAAGAACCCAATCCTCGGCCGAAACCAGAGGTTAATA
AGTTCGGGCGCCATGTATCGTGATCGAATGACTGAGGCAATCGACAAAGG
AGGAGGCTTTTGAAGGGCCCCCAGGTTATTCGTTGCTGATTCGCTTCACG
ATTACTTTTCAGCGCCACGTACCACTGCCACGACAGTATCCTTTGAAGCG
CCCAAGCATGAGTAGTACTATAGCCTGCCGTCGCAGCCCCAGCCCTGCAC
AGCCTTCATGCTGACTCGCTTACAGCAGTACCGCCACATAAACCCATGAC
GCGGGTCCTTTTTGGCGTTTTGCCCGCCAAGTGTCCCCTCCCGCTCCTCG
AGTGGTTCTTGAGGCGCACGTGCTTGCCCTTCTCGCACTCGCCGCACACC
TCAAGCAGCCTCAGTCTTTGGCCTTATCAGGACCCTCCTGATCTTGGTCA
TACCCGACGAACACGGCAACAACATGCAACAATAAGCAATCCCCCCCCGC
TCGCACCCTTCTCTTTATGTCCTTGCGTCCGAACGAATCTGCCGAGCCAG
ATGACGGACAAAGCGATGGCAGAGATGAAGAAGCCGGGTGGAAGCAACGG
CGGCGCCGGGCCCGCGGCGGGGGGGAGCGGGGAGGGGGGCGACGACGGGC
CGCACACCGTATAAGAGAGAGCTCTCTGTAACCATCAACTCTGTATCTAA
CAAACCCCGCATTTTTCATGGCGAAGTTTTGGTGTAGTTTCCATGCAAAC
GGCTCCTGTGCCTTGGAGTCGTAGTTCTAGCGTGGCCCAGCAGAATGTAT
CCGCTGCACGGGGATATCCGTGTCCGGCGGGGGGGTGCCGTGCCATGTTT
CGGCGCTGGGCATGGTGGTGCTATATGCGACTGAGATATCCGACAGCTTC
TCTGTCCGTTGTACCATTTTATTTATATTTCTAGTGTTTGTTATTGGGTG
CCCCCCCAGCCCCAACAAGCAGTGTACGTGACATGCCCTTTTTTGTACTA
CTTTTCAAGCGGGAATGAATGCTGTCGTCTCCGCGATTGATTTACGCACG
TGCATAGCCTTTGGATGTTGTGCTTGGCACCCAACGGAGGTTGGAGAGGG
GGGTGAAATCATGGCTGTAAGAGGTTTCAGGGGAGGATTGCGGCGTGGTC
GTCGCTCGAGGTATGCCCTCTAGATCATTCGAACAGCGATTCGATGGAAA
ACGGGAACGTGTTTGTTCGGGACAAACTTTGTTATCTGCATGCTGGCCTT
GGGCAACAAGTTGAGCACCTTTCCACGATGCGCGGCCTTACGTTTTACGT
TTGTGGCGTGCAGAGGTCAGCGCTGCGATGACTACTAGTCTCAAATGGTT
TGATTTTTTCGACCTGTGAATGGTTTGATTTGGGCGACAAGCAATCCATA
TCCATGCACGTATGTGCCGGCTAACTGACCCGAGCCGCGGAACGCGGTCT
GTCGTTGGAATGAAACAAATGTGGTCTTCTCCCCAGAGAGAACCTCCGAT
GATAATGAAGTCTTCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1045:4568..9684+

>mRNA_Ecto-sp9_F_contig1045.427.1 ID=mRNA_Ecto-sp9_F_contig1045.427.1|Name=mRNA_Ecto-sp9_F_contig1045.427.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:4568..9684+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGACAGGAAAGACGCCACGTCGAGCTCCGACAACCTCCTCCCGAC
AGACAAATTGGAGAACGGCCTGCGACATATGGAGGACAGGAAAGACGCCA
CGTCGAGCTCCGACAACCTCCTCCCGACAGACAAATTGGAGAACGGCCTG
CGACATGCGAAGATGATCTTCGCCACGGGCTGGGCTAGCGTTGCGGCGAC
GTACCGCGACTTGGAGAGGACGGAGACAGCCGAGAAGATCAAGGAGGGCA
CGGTCAACCTCGTCGACCGCAGCATGGACGGCCTCAGCAAGGCGAAGATG
ATCTTCGCCACGGGCTGGGCTAGCGTTGCGGCGACGTACCGCGACTTGGA
GAGGACGGAGACAGCCGAGAAGATCAAGGAGGGCACGGTCAACCTCGTCG
ACCGCAGCATGGACGGCCTCAGCAAGGTGGGATGTAAGATATCGGAGACG
ACTGAAAAGGGGGTGCAAGTGGTCGGGGCCAAGATGGAGGAGGCAGCCCC
TACCCTCGGAAGGTGGCGAGACGAGGTGGTGATCGCTAGCGAGAGAGGCT
TCGCCGCCGCCAAAGATGTGGGATGTAAGATATCGGAGACGACTGAAAAG
GGGGTGCAAGTGGTCGGGGCCAAGATGGAGGAGGCAGCCCCTACCCTCGG
AAGGTGGCGAGACGAGGTGGTGATCGCTAGCGAGAGAGGCTTCGCCGCCG
CCAAAGATATGACGGACAAAGCGATGGCAGAGATGAAGAAGCCGGGTGGA
AGCAACGGCGGCGCCGGGCCCGCGGCGGGGGGGAGCGGGGAGGGGGGCGA
CGACGGGCCGCACACCGTATAAATGACGGACAAAGCGATGGCAGAGATGA
AGAAGCCGGGTGGAAGCAACGGCGGCGCCGGGCCCGCGGCGGGGGGGAGC
GGGGAGGGGGGCGACGACGGGCCGCACACCGTATAA
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