mRNA_Ecto-sp9_F_contig10449.426.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10449.426.1
Unique NamemRNA_Ecto-sp9_F_contig10449.426.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10449.426.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10449contigEcto-sp9_F_contig10449:2793..4099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_007010.1
Exons3
Model size266
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10449.426.1prot_Ecto-sp9_F_contig10449.426.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10449 2793..3327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.3342621-CDS-Ecto-sp9_F_contig10449:2792..28371622928254.3342621-CDS-Ecto-sp9_F_contig10449:2792..2837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10449 2793..2837 -
1692277810.4869752-CDS-Ecto-sp9_F_contig10449:2792..28371692277810.4869752-CDS-Ecto-sp9_F_contig10449:2792..2837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10449 2793..2837 -
1622928254.3517556-CDS-Ecto-sp9_F_contig10449:3183..33271622928254.3517556-CDS-Ecto-sp9_F_contig10449:3183..3327Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10449 3184..3327 -
1692277810.4981627-CDS-Ecto-sp9_F_contig10449:3183..33271692277810.4981627-CDS-Ecto-sp9_F_contig10449:3183..3327Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10449 3184..3327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.3627157-UTR-Ecto-sp9_F_contig10449:3327..33651622928254.3627157-UTR-Ecto-sp9_F_contig10449:3327..3365Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10449 3328..3365 -
1692277810.5084662-UTR-Ecto-sp9_F_contig10449:3327..33651692277810.5084662-UTR-Ecto-sp9_F_contig10449:3327..3365Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10449 3328..3365 -
1622928254.3774254-UTR-Ecto-sp9_F_contig10449:4060..40991622928254.3774254-UTR-Ecto-sp9_F_contig10449:4060..4099Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10449 4061..4099 -
1692277810.517277-UTR-Ecto-sp9_F_contig10449:4060..40991692277810.517277-UTR-Ecto-sp9_F_contig10449:4060..4099Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10449 4061..4099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10449.426.1

>prot_Ecto-sp9_F_contig10449.426.1 ID=prot_Ecto-sp9_F_contig10449.426.1|Name=mRNA_Ecto-sp9_F_contig10449.426.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=63bp
MPGHTGDWNMYFTWARAESEDGVCEQSSWETDDTGHTPEITVDGAPAKPA
TMDPPLAISTSTP
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mRNA from alignment at Ecto-sp9_F_contig10449:2793..4099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10449.426.1 ID=mRNA_Ecto-sp9_F_contig10449.426.1|Name=mRNA_Ecto-sp9_F_contig10449.426.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1307bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10449:2793..4099- (Ectocarpus species9 EcSCA_722f female)
TCCCTGGTCATCGGCATGGTCGTCGATGTTGCTGCTGAGGTGAGTCGGTT
CGTGTGATGTGTACGACAGCAGTAGTCAGCGCTACACCGTCGTCGATTTT
GGATCACCGACAGGACTGTAAGGTTAAGCCTACAGCAGCAGCAGTCGCTG
TGTTGCCTCTTCTCCTCCCATCTCCTCCCAGCCCACTTTCTCTCGCGTTG
CTATTCTCGTGTTAGACCCACTGGTAATTGGCGTGAGATAATGTGTGTCA
ACGCGGTGCTGTAGTCGTTGCGCCTGTACCATATGGAGACACCGCTCGGG
ACCGGCGGTTACAGCAGGTCCTTGAGACGTGAGACACGCGTAAGCGCGGC
GACAGCAGTGTACCTTGAGACACACGCAAGCAAACGTGGCTACAGCAGTA
GGTTGAGACACACGCAAGCTTTCCCTACAGCAGTAGGTTGAGACTACATG
CGCAAGGGAATGTAGTGGTGACAACAGTGTACCCTGAGACACACGCAAGC
TTTCCCGTGGCTACAGCGGTAGGTAAGATCACATATGCAAGGCTAGCGAC
AGCATTAGGTTGAGACCGCATACGCAAGGTGACGACAGCAGTATGCCTTG
AGACACACGCAAGCAAGCGTGGCGACAGCAGTATGCCTTGAGACCACATA
CTCAAGCCTAGCGTCGTGTGTTGTTTTCCACGTTTTTTTACCGGGAGGGC
ACTTATCTGCTTTGCCTCTGCGTGGTGTTCGAAGGTGCCAACGTGCGGCG
ACAAGGCGTGGTGAACAAGAACATGCCAGGTCATACCGGCGACTGGAACA
TGTACTTCACTTGGGCGAGGGCCGAGAGCGAAGACGGTGTGTGTGAACAA
AGTTCCTGGGAGACAGACGACACAGGTCATACTCCGGAGATTACCGTCGA
TGGAGCTCCAGCGAAGGTGAGCAGCACTACTGCTGGTTTCTCTCTAGCCT
TGCTTTTCACGCTTACGGGCGGGACGGGATGCAAGGGGGCGTGTTCCATT
CGTACCGCAACATCGAGGAGAGCCCCAAGCTCACTGGTGCAGCTCACTGG
CGTAGCTCAACAAACAAGACCTGCCTCGTGTTGAGTGGACGTTTTGCTGA
TTCGCTTGGGTTGTCGTTGCGCTTGGCCATTTTTCTCTGCGGCGTACTGT
GATCCCAATAGCATTACGCTGACTGTCTCCGGCCACCCATTCGCTCGCAC
GCCTTTCCCTCGACCACCCCTGTGTTCGTGTCCTCTGTCAACCGATGCTG
CGCGATTTCAAGCCGGCGACGATGGACCCGCCCTTGGCCATTTCGACGAG
TACACCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10449:2793..4099-

>mRNA_Ecto-sp9_F_contig10449.426.1 ID=mRNA_Ecto-sp9_F_contig10449.426.1|Name=mRNA_Ecto-sp9_F_contig10449.426.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10449:2793..4099- (Ectocarpus species9 EcSCA_722f female)
ATGCCAGGTCATACCGGCGACTGGAACATGTACTTCACTTGGGCGAGGGC
CGAGAGCGAAGACGGTGTGTGTGAACAAAGTTCCTGGGAGACAGACGACA
CAGGTCATACTCCGGAGATTACCGTCGATGGAGCTCCAGCGAAGATGCCA
GGTCATACCGGCGACTGGAACATGTACTTCACTTGGGCGAGGGCCGAGAG
CGAAGACGGTGTGTGTGAACAAAGTTCCTGGGAGACAGACGACACAGGTC
ATACTCCGGAGATTACCGTCGATGGAGCTCCAGCGAAGCCGGCGACGATG
GACCCGCCCTTGGCCATTTCGACGAGTACACCGCCGGCGACGATGGACCC
GCCCTTGGCCATTTCGACGAGTACACCG
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