mRNA_Ecto-sp9_F_contig10447.424.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.140e-63 Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLMDSRLDGGSTPLFEAAKDGRLEAVKILLRANANPLLS 366
TPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+V+H HLAVSK+LIEAGADLEAR GG DTPLHVAATKGFCQGM +LMDSRLD G+TPLF AA DGRLEAV++LLRANANPLLS
Sbjct: 31 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGK-DTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLLRANANPLLS 151
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.110e-38 Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGM 246
TPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAV+HKHLAVSK+LIEAGADL+ARPGG+ DTPLHVAATKGFCQ M
Sbjct: 421 TPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI-DTPLHVAATKGFCQEM 501
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.230e-26 Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPG 189
TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHH+V+H+HLAVS LIEAGADLEARPG
Sbjct: 31 TPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 4.420e-26 Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVY--------DTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRANANPLL 363
T LM A+ G R+VR LLR GA VSV+ DG+TALH A+ ++LAV+K LI+AGA++EA+ V TPLH+AA +GFC+GMV L+ DSR+ GST ++ AA G LEAV+IL + ANPLL
Sbjct: 54 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLL 188
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.830e-22 Identity = 66/128 (51.56%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 13 VASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPG-----GVYDTPLHVAATKGFCQGMVVLMDSRL---------------DGGSTPLFEAAKDGRLEAVKIL 336
VAS +G RVVR LLR GA VS AD+DG TALH ++ +KHLAVSK L++AGADLEAR GV TPLHVAA KGF +GMV+L+ + + DG S PL AA++G+L V+ L
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVREL 164
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 6.560e-20 Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSK 147
TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV+HKHLAVSK
Sbjct: 452 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 500
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.520e-19 Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSK 147
TPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHHAV+HKHLAVSK
Sbjct: 37 TPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: transient (receptor potential cation channel subfamily A member 1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603C39C) HSP 1 Score: 72.4 bits (176), Expect = 2.350e-12 Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
TPLM+A++ G S +R LL GA V AD DG T LHH V H + + L + G TPLH AA GF + + L+ +SR + G T L EAA+ GRL +K LLR +
Sbjct: 82 TPLMLAALFGDSDSLRLLLSTGADVRRADCDGRTVLHHGVGHSRVLDILLQNKKAKRLLEKKDGAGCTPLHHAAQGGFDKNVRSLLAAGADRNSRNNNGETALHEAARHGRLNVIKTLLRGS 203
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: TRPA1 (protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZUP9_BRALA) HSP 1 Score: 72.4 bits (176), Expect = 2.390e-12 Identity = 54/123 (43.90%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV-HHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
TPLM+A++ G S +R LL GA V D DG + LHHAV H K L V + +A LE + G TPLH AA GF + + L+ +SR D G T L EAA+ GRL +K LLR +
Sbjct: 322 TPLMLAALFGDSDSLRLLLSTGADVRRVDCDGRSVLHHAVGHSKVLDVLLQNKKAKRLLEKKDGAGC-TPLHHAAQGGFDKNVRSLLAAGADRNSRNDNGETALNEAARHGRLNVMKTLLRGS 443
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: uncharacterized (protein LOC109484015 isoform X1 n=3 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AHN3_BRABE) HSP 1 Score: 70.5 bits (171), Expect = 1.060e-11 Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV-HHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
TPLM+A++ G S +R LL GA V D D T LHHAV H K L + + +A LE + G TPLH AA GF + + L+ +SR + G T L EAA+ GRL +K LLR +
Sbjct: 323 TPLMLAALFGDSDSLRLLLSTGADVRRVDCDSRTVLHHAVGHSKVLDILLQNTKAKRLLEKKDGAGC-TPLHHAAQGGFDKNVRSLIAAGADRNSRNNNGETALHEAARHGRLNVLKTLLRGS 444 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10447.424.1 >prot_Ecto-sp9_F_contig10447.424.1 ID=prot_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp MVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEback to top mRNA from alignment at Ecto-sp9_F_contig10447:3020..3385+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10447.424.1 ID=mRNA_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3020..3385+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10447:3020..3385+ >mRNA_Ecto-sp9_F_contig10447.424.1 ID=mRNA_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3020..3385+ (Ectocarpus species9 EcSCA_722f female)back to top |