mRNA_Ecto-sp9_F_contig10447.424.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10447.424.1
Unique NamemRNA_Ecto-sp9_F_contig10447.424.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.140e-63
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLMDSRLDGGSTPLFEAAKDGRLEAVKILLRANANPLLS 366
            TPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+V+H HLAVSK+LIEAGADLEAR GG  DTPLHVAATKGFCQGM +LMDSRLD G+TPLF AA DGRLEAV++LLRANANPLLS
Sbjct:   31 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGK-DTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLLRANANPLLS 151          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.110e-38
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGM 246
            TPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAV+HKHLAVSK+LIEAGADL+ARPGG+ DTPLHVAATKGFCQ M
Sbjct:  421 TPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI-DTPLHVAATKGFCQEM 501          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.230e-26
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPG 189
            TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHH+V+H+HLAVS  LIEAGADLEARPG
Sbjct:   31 TPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.420e-26
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVY--------DTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRANANPLL 363
            T LM A+  G  R+VR LLR GA VSV+  DG+TALH A+  ++LAV+K LI+AGA++EA+   V          TPLH+AA +GFC+GMV L+      DSR+  GST ++ AA  G LEAV+IL +  ANPLL
Sbjct:   54 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLL 188          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.830e-22
Identity = 66/128 (51.56%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   13 VASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPG-----GVYDTPLHVAATKGFCQGMVVLMDSRL---------------DGGSTPLFEAAKDGRLEAVKIL 336
            VAS +G  RVVR LLR GA VS AD+DG TALH ++ +KHLAVSK L++AGADLEAR       GV  TPLHVAA KGF +GMV+L+ + +               DG S PL  AA++G+L  V+ L
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVREL 164          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.560e-20
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSK 147
            TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV+HKHLAVSK
Sbjct:  452 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 500          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.520e-19
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSK 147
            TPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHHAV+HKHLAVSK
Sbjct:   37 TPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: transient (receptor potential cation channel subfamily A member 1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603C39C)

HSP 1 Score: 72.4 bits (176), Expect = 2.350e-12
Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
            TPLM+A++ G S  +R LL  GA V  AD DG T LHH V H  +       +    L  +  G   TPLH AA  GF + +  L+      +SR + G T L EAA+ GRL  +K LLR +
Sbjct:   82 TPLMLAALFGDSDSLRLLLSTGADVRRADCDGRTVLHHGVGHSRVLDILLQNKKAKRLLEKKDGAGCTPLHHAAQGGFDKNVRSLLAAGADRNSRNNNGETALHEAARHGRLNVIKTLLRGS 203          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: TRPA1 (protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZUP9_BRALA)

HSP 1 Score: 72.4 bits (176), Expect = 2.390e-12
Identity = 54/123 (43.90%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV-HHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
            TPLM+A++ G S  +R LL  GA V   D DG + LHHAV H K L V  +  +A   LE + G    TPLH AA  GF + +  L+      +SR D G T L EAA+ GRL  +K LLR +
Sbjct:  322 TPLMLAALFGDSDSLRLLLSTGADVRRVDCDGRSVLHHAVGHSKVLDVLLQNKKAKRLLEKKDGAGC-TPLHHAAQGGFDKNVRSLLAAGADRNSRNDNGETALNEAARHGRLNVMKTLLRGS 443          
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Match: uncharacterized (protein LOC109484015 isoform X1 n=3 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AHN3_BRABE)

HSP 1 Score: 70.5 bits (171), Expect = 1.060e-11
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAV-HHKHLAVSKELIEAGADLEARPGGVYDTPLHVAATKGFCQGMVVLM------DSRLDGGSTPLFEAAKDGRLEAVKILLRAN 348
            TPLM+A++ G S  +R LL  GA V   D D  T LHHAV H K L +  +  +A   LE + G    TPLH AA  GF + +  L+      +SR + G T L EAA+ GRL  +K LLR +
Sbjct:  323 TPLMLAALFGDSDSLRLLLSTGADVRRVDCDSRTVLHHAVGHSKVLDILLQNTKAKRLLEKKDGAGC-TPLHHAAQGGFDKNVRSLIAAGADRNSRNNNGETALHEAARHGRLNVLKTLLRGS 444          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10447.424.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
EsV-1-11.140e-6386.89n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized7.110e-3890.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.230e-2690.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.420e-2650.37protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHA... [more]
Uncharacterized1.830e-2251.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.560e-2097.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.520e-1995.92protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
transient2.350e-1240.16receptor potential cation channel subfamily A memb... [more]
TRPA12.390e-1243.90protein n=2 Tax=Branchiostoma lanceolatum TaxID=77... [more]
uncharacterized1.060e-1142.28protein LOC109484015 isoform X1 n=3 Tax=Branchiost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10447contigEcto-sp9_F_contig10447:3020..3385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.8e-47
Seed eggNOG ortholog2880.D8LH66
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.177585-UTR-Ecto-sp9_F_contig10447:3019..30281622928254.177585-UTR-Ecto-sp9_F_contig10447:3019..3028Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 3020..3028 +
1692277810.4127405-UTR-Ecto-sp9_F_contig10447:3019..30281692277810.4127405-UTR-Ecto-sp9_F_contig10447:3019..3028Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 3020..3028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.198025-CDS-Ecto-sp9_F_contig10447:3028..33851622928254.198025-CDS-Ecto-sp9_F_contig10447:3028..3385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 3029..3385 +
1692277810.422456-CDS-Ecto-sp9_F_contig10447:3028..33851692277810.422456-CDS-Ecto-sp9_F_contig10447:3028..3385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 3029..3385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10447.424.1prot_Ecto-sp9_F_contig10447.424.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10447 3029..3385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10447.424.1

>prot_Ecto-sp9_F_contig10447.424.1 ID=prot_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIE
AGADLEARPGGVYDTPLHVAATKGFCQGMVVLMDSRLDGGSTPLFEAAKD
GRLEAVKILLRANANPLLS
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mRNA from alignment at Ecto-sp9_F_contig10447:3020..3385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10447.424.1 ID=mRNA_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3020..3385+ (Ectocarpus species9 EcSCA_722f female)
ACACCGCTGATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGA CCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATA CTGCTCTGCACCACGCGGTTCATCACAAACACCTGGCCGTGAGCAAAGAG CTGATCGAGGCGGGAGCGGACCTTGAAGCGAGGCCCGGTGGTGTGTATGA TACACCGCTTCACGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGG TGCTGATGGACAGCAGGCTCGACGGCGGATCAACACCGCTGTTCGAAGCG GCAAAGGACGGGCGGCTGGAAGCGGTGAAAATTCTCCTTCGGGCGAACGC GAATCCGCTCTTGTCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10447:3020..3385+

>mRNA_Ecto-sp9_F_contig10447.424.1 ID=mRNA_Ecto-sp9_F_contig10447.424.1|Name=mRNA_Ecto-sp9_F_contig10447.424.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3020..3385+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGACCTTCTGCG
GCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGC
ACCACGCGGTTCATCACAAACACCTGGCCGTGAGCAAAGAGCTGATCGAG
GCGGGAGCGGACCTTGAAGCGAGGCCCGGTGGTGTGTATGATACACCGCT
TCACGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTGCTGATGG
ACAGCAGGCTCGACGGCGGATCAACACCGCTGTTCGAAGCGGCAAAGGAC
GGGCGGCTGGAAGCGGTGAAAATTCTCCTTCGGGCGAACGCGAATCCGCT
CTTGTCAATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTCGTCAGAGACC
TTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACT
GCTCTGCACCACGCGGTTCATCACAAACACCTGGCCGTGAGCAAAGAGCT
GATCGAGGCGGGAGCGGACCTTGAAGCGAGGCCCGGTGGTGTGTATGATA
CACCGCTTCACGTGGCCGCGACGAAAGGGTTTTGCCAAGGAATGGTGGTG
CTGATGGACAGCAGGCTCGACGGCGGATCAACACCGCTGTTCGAAGCGGC
AAAGGACGGGCGGCTGGAAGCGGTGAAAATTCTCCTTCGGGCGAACGCGA
ATCCGCTCTTGTCA
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