mRNA_Ecto-sp9_F_contig10447.423.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 318 bits (815), Expect = 1.740e-108 Identity = 168/191 (87.96%), Postives = 176/191 (92.15%), Query Frame = 1
Query: 70 MPSTLSKLYDAAASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARGVGGTPLHVAAAKGFHKGMVVLIHAGANQMDAVHATSWCWPSALEKSTPIVRILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYSPDKN 642
MPSTLSKLYDAAASGSVERTVAVLSQ +VDIDGGYGDVGRTPLM ASTMGYLRVVRVL+R GAR+S+ADNDGATALHLSIV KHLAVS+ALVKAGA VEARGV GTPLHVAAAKGFHKGMV+LIH +DAVHA SWCWPSALEKS PIVR+LPGLKRRATKP VLLAAL RYNNKQDGPFLGYSPDKN
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH-----VDAVHAISWCWPSALEKSKPIVRVLPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 217 bits (553), Expect = 1.200e-68 Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 1
Query: 70 MPSTLSKLYDAAASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARGVGGTPLHVAAAKGFHKGMVVLIHAG 450
MPSTLSKLYDAAASGSVERTVAVLSQ +V+IDGGYGDVGRTPLM ASTMGYLRVVRVL+RLGAR+S+ADNDGATALHLSIVNKHLAVSKALVKAGA VEARGV GTPLHVAAAKGFHKGMV+LIHAG
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.890e-62 Identity = 125/160 (78.12%), Postives = 134/160 (83.75%), Query Frame = 1
Query: 70 MPSTLSKLYDAAASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARGVGGTPLHVAAAKGFHKGMVVLIHAGAN-QMDAVHATSWCWPSALEKSTPIVRILPGLK 546
MPSTLSKLY A ASGSVERTVAVLSQ +VDIDGGYGDVGRTPLM A TMGYLRVVRVL+RLGAR+S+ADNDGATALHLSIVNKHLAVSKALVKAGA VEARGV GTPLHVAAAKGFHKGMV+LIHAGAN + + + SA + VRIL G K
Sbjct: 1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISARQGRLEDVRILVGAK 160
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 171 bits (434), Expect = 4.310e-48 Identity = 133/367 (36.24%), Postives = 140/367 (38.15%), Query Frame = 1
Query: 202 VASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEAR-------GVGGTPLHVAAAKGFHKGMVVLIHAGAN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMDAVHATSWCWPSALEKSTPIVRILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYSPDKNEG 648
VASTMGYLRVVRVL+RLGAR+S ADNDGATALHLSIVNKHLAVSKALVKAGAD+EAR GVG TPLHVAAAKGFHKGMV+LIHAG Q+DAVHATSWCWPSALEKSTPIVR+LPGLKRRATKPRV LA L RYNNKQDGPFLGY+P KN G
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETSEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 3.090e-41 Identity = 133/400 (33.25%), Postives = 157/400 (39.25%), Query Frame = 1
Query: 106 ASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARGV-------------------GGTPLHVAAAKG---------------------------------------------------------------------------FHKGMV---------------------------------------------------------------------------VLIHAGAN-----------------------------------------------------QMDAVHATSWCWPSALEKSTPIVRILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYSPDK 639
A GSVERTVA+LS+ +VDIDG YGD GRTPLMVASTMGYLRV RVL+RLGA +S+ADNDGATALHLS+ N+HLAVSKAL+KAGA+VEAR V G TPL+ +A +G F G+V +L+ AGA+ Q+DAVHA SWCWP+ALEKSTPIVR+LPGLKRRATKPRV+LAAL RYN+KQDGP S ++
Sbjct: 5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESLPLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETSEDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRRATKPRVVLAALSRYNDKQDGPLPSGSVER 404
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.390e-27 Identity = 72/125 (57.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query: 70 MPSTLSKLYDAAASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARGVG-GTPLHVAAAKGFHKGMVVLI 441
MPSTLSK ASGS++ T+A ID G GD +TPLMVAS +G RVVR L+R GA +S+AD+DG TALH S+ + HLAVSK L++AGAD+EAR G TPLHVAA KGF +GM +L+
Sbjct: 1 MPSTLSK-----ASGSIDPTIATTG-----IDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM 115
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 116 bits (290), Expect = 5.880e-27 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 70 MPSTLSK-LYDAAASGSVERTVAVLSQRAVDIDGGYGDVGRTPLMVASTMGYLRVVRVLVRLGARLSLADNDGATALHLSIVNKHLAVSKALVKAGADVEARG----------VGGTPLHVAAAKGFHKGMVVLIHAGAN 456
+PST S LY AA+SGSVERT+ +LS +ID + G T LM A+ GYLR+VRVL+R GA +S++ +DG TALH +I ++LAV+KAL+KAGA+VEA+ G TPLH+AA +GF +GMV LI+AGAN
Sbjct: 13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGAN 152
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.820e-15 Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 421 KGMVVLIHAGANQMDAVHATSWCWP---------SALEKSTPIVRILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYSPDKNEGA 651
KG++ L+ Q +AVH+ SW WP ++ +K T I R++P LKRRA KPRVLLAAL RYN KQDG FLGY P+K+ G
Sbjct: 404 KGVIRLLR----QEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 9.450e-14 Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 421 KGMVVLIHAGANQMDAVHATSWCWP---------SALEKSTPIVRILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYS-----------PDKNEGA 651
KG++ L+ Q +AVHA SW WP ++ +KST I R+LP LKRRA KPRVLLAA+ RYNNK DG FLG P KN GA
Sbjct: 350 KGVIRLLR----QEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 2.240e-12 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 529 ILPGLKRRATKPRVLLAALCRYNNKQDGPFLGYSPDKNEGA 651
+LP LK RA KPRVLLAA+ RYNNKQDGPFLGY P+KN G
Sbjct: 1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10447.423.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10447.423.1 >prot_Ecto-sp9_F_contig10447.423.1 ID=prot_Ecto-sp9_F_contig10447.423.1|Name=mRNA_Ecto-sp9_F_contig10447.423.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=219bp VRCVAITYRKQQTAPRALVSISNMPSTLSKLYDAAASGSVERTVAVLSQRback to top mRNA from alignment at Ecto-sp9_F_contig10447:106..1566+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10447.423.1 ID=mRNA_Ecto-sp9_F_contig10447.423.1|Name=mRNA_Ecto-sp9_F_contig10447.423.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1461bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:106..1566+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10447:106..1566+ >mRNA_Ecto-sp9_F_contig10447.423.1 ID=mRNA_Ecto-sp9_F_contig10447.423.1|Name=mRNA_Ecto-sp9_F_contig10447.423.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:106..1566+ (Ectocarpus species9 EcSCA_722f female)back to top |