mRNA_Ecto-sp9_F_contig10436.419.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10436.419.1
Unique NamemRNA_Ecto-sp9_F_contig10436.419.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10436.419.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10436contigEcto-sp9_F_contig10436:3148..3522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondelta-6 fatty acid desaturase
Ec32 orthologEc-24_002300.2
Exons1
Model size376
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928253.5162027-CDS-Ecto-sp9_F_contig10436:3147..35221622928253.5162027-CDS-Ecto-sp9_F_contig10436:3147..3522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10436 3148..3522 +
1692277810.0999677-CDS-Ecto-sp9_F_contig10436:3147..35221692277810.0999677-CDS-Ecto-sp9_F_contig10436:3147..3522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10436 3148..3522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10436.419.1prot_Ecto-sp9_F_contig10436.419.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10436 3148..3522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10436.419.1

>prot_Ecto-sp9_F_contig10436.419.1 ID=prot_Ecto-sp9_F_contig10436.419.1|Name=mRNA_Ecto-sp9_F_contig10436.419.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
MSSASGVGGGAGVPYLHIVVRKSKTCGTRRWRCAAAVVPRLTLGGVCLEK
IIDREVKGTRWRAISIYFNRERTSRIFSERSCELTTMAPVDVVIASECLH
TRNHRPGHTLRRIWSSPLLMANSFD
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mRNA from alignment at Ecto-sp9_F_contig10436:3148..3522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10436.419.1 ID=mRNA_Ecto-sp9_F_contig10436.419.1|Name=mRNA_Ecto-sp9_F_contig10436.419.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10436:3148..3522+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCAGTGCGAGTGGAGTTGGGGGGGGGGCGGGGGTTCCGTATTTGCA
TATTGTAGTCAGAAAATCGAAAACTTGTGGTACACGGCGCTGGCGCTGTG
CTGCAGCTGTTGTTCCGCGCTTGACGCTCGGAGGTGTTTGTCTCGAAAAA
ATAATCGATCGAGAGGTAAAGGGAACACGGTGGCGGGCTATCTCAATTTA
CTTTAATCGGGAGCGTACATCTAGGATCTTTTCGGAGAGAAGCTGCGAGC
TTACGACGATGGCGCCGGTGGACGTGGTGATAGCGTCTGAATGTCTTCAC
ACGCGCAACCATCGGCCTGGCCATACTCTCCGGCGCATTTGGTCGTCCCC
GCTACTCATGGCAAACTCATTTGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10436:3148..3522+

>mRNA_Ecto-sp9_F_contig10436.419.1 ID=mRNA_Ecto-sp9_F_contig10436.419.1|Name=mRNA_Ecto-sp9_F_contig10436.419.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10436:3148..3522+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCAGTGCGAGTGGAGTTGGGGGGGGGGCGGGGGTTCCGTATTTGCA
TATTGTAGTCAGAAAATCGAAAACTTGTGGTACACGGCGCTGGCGCTGTG
CTGCAGCTGTTGTTCCGCGCTTGACGCTCGGAGGTGTTTGTCTCGAAAAA
ATAATCGATCGAGAGGTAAAGGGAACACGGTGGCGGGCTATCTCAATTTA
CTTTAATCGGGAGCGTACATCTAGGATCTTTTCGGAGAGAAGCTGCGAGC
TTACGACGATGGCGCCGGTGGACGTGGTGATAGCGTCTGAATGTCTTCAC
ACGCGCAACCATCGGCCTGGCCATACTCTCCGGCGCATTTGGTCGTCCCC
GCTACTCATGGCAAACTCATTTGACATGAGCAGTGCGAGTGGAGTTGGGG
GGGGGGCGGGGGTTCCGTATTTGCATATTGTAGTCAGAAAATCGAAAACT
TGTGGTACACGGCGCTGGCGCTGTGCTGCAGCTGTTGTTCCGCGCTTGAC
GCTCGGAGGTGTTTGTCTCGAAAAAATAATCGATCGAGAGGTAAAGGGAA
CACGGTGGCGGGCTATCTCAATTTACTTTAATCGGGAGCGTACATCTAGG
ATCTTTTCGGAGAGAAGCTGCGAGCTTACGACGATGGCGCCGGTGGACGT
GGTGATAGCGTCTGAATGTCTTCACACGCGCAACCATCGGCCTGGCCATA
CTCTCCGGCGCATTTGGTCGTCCCCGCTACTCATGGCAAACTCATTTGAC
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