mRNA_Ecto-sp9_F_contig10433.418.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10433.418.1
Unique NamemRNA_Ecto-sp9_F_contig10433.418.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10433.418.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.070e-8
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = -2 
Query:  635 MLAVCHHLAFTFSCPPSFNSVISLNLLASLKRL 733
            ML VCH L FTFSCPPSFNSVISLNLL +LKRL
Sbjct:    1 MLVVCHDLTFTFSCPPSFNSVISLNLLDNLKRL 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10433.418.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.070e-884.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10433contigEcto-sp9_F_contig10433:190..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007880.1
Exons1
Model size734
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928253.4630394-CDS-Ecto-sp9_F_contig10433:189..3541622928253.4630394-CDS-Ecto-sp9_F_contig10433:189..354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10433 190..354 +
1692277810.083825-CDS-Ecto-sp9_F_contig10433:189..3541692277810.083825-CDS-Ecto-sp9_F_contig10433:189..354Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10433 190..354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928253.4762616-UTR-Ecto-sp9_F_contig10433:354..9231622928253.4762616-UTR-Ecto-sp9_F_contig10433:354..923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10433 355..923 +
1692277810.0917718-UTR-Ecto-sp9_F_contig10433:354..9231692277810.0917718-UTR-Ecto-sp9_F_contig10433:354..923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10433 355..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10433.418.1prot_Ecto-sp9_F_contig10433.418.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10433 190..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10433.418.1

>prot_Ecto-sp9_F_contig10433.418.1 ID=prot_Ecto-sp9_F_contig10433.418.1|Name=mRNA_Ecto-sp9_F_contig10433.418.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
MRRIGRYCLLATVIKWDGTCSRFSLRSVCVGERLDLHFWTTLPCLEGGVR
HQQH*
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mRNA from alignment at Ecto-sp9_F_contig10433:190..923+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10433.418.1 ID=mRNA_Ecto-sp9_F_contig10433.418.1|Name=mRNA_Ecto-sp9_F_contig10433.418.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10433:190..923+ (Ectocarpus species9 EcSCA_722f female)
ATGCGTAGGATCGGACGATATTGCTTGCTGGCAACGGTGATTAAGTGGGA
CGGGACGTGTTCGCGATTCAGTCTGAGATCTGTTTGTGTTGGCGAACGAC
TTGATCTCCATTTCTGGACCACTCTCCCGTGTTTGGAGGGTGGAGTCCGA
CACCAGCAGCACTGACAGGCACACATTTGGGATTGAACTCGTACAAGGTT
ATTTCGGAGAGCAAAAAGACAAGCTGTTGTGTCCTTTGATTGGAGGCCGC
GGTTGTTCCCGCTGGAAACAGGCCAGGCTTCACTAGTGGGTGCGACGCTT
CTGCCTATCGTTGGGAAGTCCTTCGGGCGGAAAGTGGAAGGAAGGATGGA
TGCGACATGTTGGGTATTTTTCCTCACCCACAACCCTTGGCGTTTTCGAT
GGAACGGCATGAATTGTCCGTGGCGCGTTTTGTTTTTTTGTAGGAAACAC
GCCATGCCATCGACTTGGACGTGGTCAGCCCTTATGCCGCAAGCACAGAT
GAAGAATGGAGCATCTCTTAAGGACGGGGGGGCAGACCGTTTTCCCTTGA
GAGTGTAAGCACTGCCAGCGTTAGCTGAGAACCGACCATACCTCGAAATC
GGACGACTGGACGAACGTAAACGTGCAACAAAGAAAGGCGTTTGAGGCTA
GCGAGCAAATTTAGTGATATAACACTGTTGAACGAAGGAGGGCATGAAAA
CGTGAAAGCCAAATGGTGACAAACCGCGAGCATA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10433:190..923+

>mRNA_Ecto-sp9_F_contig10433.418.1 ID=mRNA_Ecto-sp9_F_contig10433.418.1|Name=mRNA_Ecto-sp9_F_contig10433.418.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10433:190..923+ (Ectocarpus species9 EcSCA_722f female)
ATGCGTAGGATCGGACGATATTGCTTGCTGGCAACGGTGATTAAGTGGGA
CGGGACGTGTTCGCGATTCAGTCTGAGATCTGTTTGTGTTGGCGAACGAC
TTGATCTCCATTTCTGGACCACTCTCCCGTGTTTGGAGGGTGGAGTCCGA
CACCAGCAGCACTGAATGCGTAGGATCGGACGATATTGCTTGCTGGCAAC
GGTGATTAAGTGGGACGGGACGTGTTCGCGATTCAGTCTGAGATCTGTTT
GTGTTGGCGAACGACTTGATCTCCATTTCTGGACCACTCTCCCGTGTTTG
GAGGGTGGAGTCCGACACCAGCAGCACTGA
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