mRNA_Ecto-sp9_F_contig1043.414.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1043.414.1
Unique NamemRNA_Ecto-sp9_F_contig1043.414.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI)

HSP 1 Score: 486 bits (1251), Expect = 1.990e-167
Identity = 259/261 (99.23%), Postives = 261/261 (100.00%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASSAVSGGDDTMLDEFDTQEQGDVYF 838
            MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAK+IHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAAS+AVSGGDDTMLDEFDTQEQGDVYF
Sbjct:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 261
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: ATP (synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA)

HSP 1 Score: 330 bits (845), Expect = 2.260e-106
Identity = 175/206 (84.95%), Postives = 188/206 (91.26%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 673
            MSAQ VAPTRMAL +YKGKL+GAKKGYELLKKKSDALKARFR IAK+I+ELK+ MREDA+ AFFSLTQA QY AGDFR KVLDTP PAA+R R+RTDNVAGVKLP+F  Y TG E  DNIGL+GGGQKV QCR+KYK WVENL+KLASLQTSF+TMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK
Sbjct:    1 MSAQ-VAPTRMALTLYKGKLVGAKKGYELLKKKSDALKARFRAIAKQIYELKKQMREDASMAFFSLTQA-QYAAGDFRSKVLDTPHPAAIRVRSRTDNVAGVKLPMFTPYGTGVEVHDNIGLSGGGQKVAQCREKYKQWVENLVKLASLQTSFITMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 204
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A2_9STRA)

HSP 1 Score: 261 bits (666), Expect = 9.660e-80
Identity = 149/265 (56.23%), Postives = 187/265 (70.57%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLD-TPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAA---REQALKNELAAANKLLETDEALAASSAVSGGDDTMLDEFDTQEQGDVYF 838
            MS   VAPTRMAL M+KGK +GAKKG+ELLKKKSDALKAR R+I KEI+  K+ + + A TAFFSLTQA QY AGDFR +V+D     A++R   R DNVAGVKLP+F  YE  +E K+N+GLAGGG+ +  CR K+KA++ +L++L+SLQTS++TMDEALKVTNRR NALENVTIPR+EG++SYI RELDELEREDF+RLK+V  KK+E A     + +L  E+A                        ML  +D  +  DVYF
Sbjct:    1 MSGANVAPTRMALTMFKGKRVGAKKGFELLKKKSDALKARHREIMKEIYRHKKNIADQAQTAFFSLTQA-QYAAGDFRTQVIDGCGNSASMRVHNRIDNVAGVKLPIFMEYEASTEQKENLGLAGGGRAIANCRAKFKAFLVSLVQLSSLQTSYITMDEALKVTNRRCNALENVTIPRIEGILSYIERELDELEREDFSRLKRVTSKKKEDAEDQPEQDSLDKEMA------------------------MLSNYDVADDNDVYF 240
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKB3_AURAN)

HSP 1 Score: 258 bits (659), Expect = 1.130e-78
Identity = 140/211 (66.35%), Postives = 171/211 (81.04%), Query Frame = 2 
Query:   62 AQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK--KREAA 688
            A QV PTRMALQ YKGK  GA KG++LLKKK+DALKARFR IAKEI++ K  M E  +TA+FSLT AAQY AGDF+ KVL+    A+VR   +TDN+AGVK+PVF  ++TG+E  +NIGLAGGG+K+ +C++K+   +  L+KLASLQTSFVTMDEALKVTNRRVNALENVT+PR+E  +SYI  ELDELEREDFTRLKKV ++  KR+AA
Sbjct:    2 ADQVPPTRMALQTYKGKKAGASKGHQLLKKKADALKARFRDIAKEIYKTKGTMSESCSTAYFSLT-AAQYAAGDFKTKVLEGNFVASVRVTGQTDNIAGVKIPVFRQFDTGAEHLENIGLAGGGRKIAECKEKFTNLLAVLVKLASLQTSFVTMDEALKVTNRRVNALENVTLPRIEKTLSYITSELDELEREDFTRLKKVKDQNSKRQAA 211
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: H-or (na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG62_9STRA)

HSP 1 Score: 258 bits (658), Expect = 2.970e-78
Identity = 157/271 (57.93%), Postives = 187/271 (69.00%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAK-----DNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAR----EQALKNELAAANKLLETDEALAASSAVSGG-DDTMLDEFDTQEQGDVYF 838
            MS   VAPTRMAL MYK K +GAKKGYELLKKKSDALK RFR I K+I   K  M +  ++AFFSLTQA QY AGDFR +VL     A+VR    TDNVAGVKLPVF  YE  SE K     DN+GLA GG+++  C++K+  ++ NL++LASLQTSF+T+DEALKVTNRRVNALENVTIPR+E +++YINRELDELEREDFTRLKKV   KR A A     E+AL    AAA          A SS + GG    +  ++DT    D+ F
Sbjct:    1 MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIARTKGNMADQGSSAFFSLTQA-QYAAGDFRQQVLQGSLTASVRVHTHTDNVAGVKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRLASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELEREDFTRLKKVQGSKRTAQAAAEAAEEALHKAAAAAG---------ARSSKIEGGLVKDVTAQYDTAGDSDIVF 261
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BRW9_HYAAE)

HSP 1 Score: 255 bits (651), Expect = 2.660e-77
Identity = 150/261 (57.47%), Postives = 181/261 (69.35%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASSAVSGGDDTMLDEFDTQEQGDVYF 838
            MS+ QVAPTRMAL  +K K + AKKG+ELLKKK+DALK RF+ + +EI + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  DNIGLAGGG K+  CR K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI+RELDELEREDF R+KKV   K+      QA K E+AA N L E   A      V   D  +L +++     DV F
Sbjct:    1 MSSVQVAPTRMALTTFKTKSVSAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVTTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSDNIGLAGGGGKIQNCRAKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIENTISYISRELDELEREDFVRIKKVQANKQVIEKAVQAKKKEVAAKNALAEDPIA-----DVVASDHDILSQYELSADADVVF 255
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVP0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 4.620e-77
Identity = 142/206 (68.93%), Postives = 165/206 (80.10%), Query Frame = 2 
Query:   53 TMSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYET--GSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKV 664
            TM  QQVAPTRMALQ+YKGK   A KGY+LLKKKSDALK RFR  AK+I   K  M ED+A AFFSLTQA QY AGDF+  VL+    A+VR   RTDNVAGVKLPVF SYET  G+ A +NIGLAGGG++V Q RDK+K ++  ++ LASLQTSF+T+DEALK+TNRRVNALENVTIPR+E  + YINRELDELERE+FTRLKK+
Sbjct:   56 TMGDQQVAPTRMALQLYKGKREAATKGYKLLKKKSDALKVRFRDYAKKIAANKGSMAEDSAGAFFSLTQA-QYAAGDFKLAVLEGNCTASVRIHTRTDNVAGVKLPVFSSYETADGTNASENIGLAGGGRQVQQSRDKFKEFMGKMVTLASLQTSFLTLDEALKITNRRVNALENVTIPRIEATLKYINRELDELEREEFTRLKKL 260
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BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: H-or (Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1C8_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.030e-75
Identity = 137/215 (63.72%), Postives = 165/215 (76.74%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQ 700
            MS  QV PTRM L +YK K + AKKGY+LLKKK+DALK RF+ + +EI + K  M +DAA AFFSLTQA QY AGDFR KV+++   A  R   R DNVAGVKLPVF   ET  E  +NIGL+GGG K+  CRDK+++ ++ L+KLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR++ VI YI+RELDELEREDF R+KKV   K EAA  +Q
Sbjct:    1 MSTVQVPPTRMNLTVYKAKRVAAKKGYDLLKKKADALKMRFQAMLREIQKTKMAMSQDAADAFFSLTQA-QYAAGDFRHKVVESVTTAEFRLENRIDNVAGVKLPVFTDVETTREKSENIGLSGGGGKIQNCRDKFRSLLKALVKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIDKVIDYISRELDELEREDFVRIKKVQANKIEAAKEQQ 214
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: H-or (Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT)

HSP 1 Score: 250 bits (638), Expect = 2.630e-75
Identity = 134/203 (66.01%), Postives = 160/203 (78.82%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKV 664
            MS+ QVAPTRMAL  +KGK +GAKKG+ELLKKK+DALK RF+ + +EI + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CR+K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKV 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Match: H-or (na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP31_PLAHL)

HSP 1 Score: 249 bits (635), Expect = 1.350e-74
Identity = 137/209 (65.55%), Postives = 163/209 (77.99%), Query Frame = 2 
Query:   56 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKRE 682
            MSAQ VAPTRMAL  Y+GK +GAKKG+ELLKKK+DALK RF+ + +EI + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CR+K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV   K+E
Sbjct:    1 MSAQ-VAPTRMALTTYRGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKLAMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKVQANKQE 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1043.414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.990e-16799.23protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6... [more]
ATP2.260e-10684.95synthase subunit D-domain-containing protein n=1 T... [more]
Hypothetical9.660e-8056.23protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized1.130e-7866.35protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
H-or2.970e-7857.93na-translocating f-v-type and a-type atpase (F-atp... [more]
Uncharacterized2.660e-7757.47protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M... [more]
Hypothetical4.620e-7768.93protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
H-or2.030e-7563.72Na-translocating F-type, V-type and A-type ATPase ... [more]
H-or2.630e-7566.01Na-translocating F-type, V-type and A-type ATPase ... [more]
H-or1.350e-7465.55na-translocating f-v-type and a-type atpase (F-atp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1043contigEcto-sp9_F_contig1043:6598..11317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.8
Seed ortholog evalue1.6e-135
Seed eggNOG ortholog2880.D7FLL6
Preferred nameVMA8
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1394@1,KOG1647@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, V1 complex, subunit D
Ec32 orthologEc-17_000670.1
Exons6
Model size1834
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1043.414.1prot_Ecto-sp9_F_contig1043.414.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1043 6653..10324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928251.8038626-UTR-Ecto-sp9_F_contig1043:6597..66521622928251.8038626-UTR-Ecto-sp9_F_contig1043:6597..6652Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1043 6598..6652 +
1692277809.8075488-UTR-Ecto-sp9_F_contig1043:6597..66521692277809.8075488-UTR-Ecto-sp9_F_contig1043:6597..6652Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1043 6598..6652 +
1622928252.6921952-UTR-Ecto-sp9_F_contig1043:10324..113171622928252.6921952-UTR-Ecto-sp9_F_contig1043:10324..11317Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1043 10325..11317 +
1692277809.8812134-UTR-Ecto-sp9_F_contig1043:10324..113171692277809.8812134-UTR-Ecto-sp9_F_contig1043:10324..11317Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1043 10325..11317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928251.8194172-CDS-Ecto-sp9_F_contig1043:6652..67661622928251.8194172-CDS-Ecto-sp9_F_contig1043:6652..6766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 6653..6766 +
1692277809.8181245-CDS-Ecto-sp9_F_contig1043:6652..67661692277809.8181245-CDS-Ecto-sp9_F_contig1043:6652..6766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 6653..6766 +
1622928251.8440375-CDS-Ecto-sp9_F_contig1043:7195..73211622928251.8440375-CDS-Ecto-sp9_F_contig1043:7195..7321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 7196..7321 +
1692277809.8330336-CDS-Ecto-sp9_F_contig1043:7195..73211692277809.8330336-CDS-Ecto-sp9_F_contig1043:7195..7321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 7196..7321 +
1622928251.8597853-CDS-Ecto-sp9_F_contig1043:8173..82781622928251.8597853-CDS-Ecto-sp9_F_contig1043:8173..8278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 8174..8278 +
1692277809.8458905-CDS-Ecto-sp9_F_contig1043:8173..82781692277809.8458905-CDS-Ecto-sp9_F_contig1043:8173..8278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 8174..8278 +
1622928251.877746-CDS-Ecto-sp9_F_contig1043:8626..87641622928251.877746-CDS-Ecto-sp9_F_contig1043:8626..8764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 8627..8764 +
1692277809.855614-CDS-Ecto-sp9_F_contig1043:8626..87641692277809.855614-CDS-Ecto-sp9_F_contig1043:8626..8764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 8627..8764 +
1622928251.8940134-CDS-Ecto-sp9_F_contig1043:9331..94291622928251.8940134-CDS-Ecto-sp9_F_contig1043:9331..9429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 9332..9429 +
1692277809.8664935-CDS-Ecto-sp9_F_contig1043:9331..94291692277809.8664935-CDS-Ecto-sp9_F_contig1043:9331..9429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 9332..9429 +
1622928252.4075778-CDS-Ecto-sp9_F_contig1043:10119..103241622928252.4075778-CDS-Ecto-sp9_F_contig1043:10119..10324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 10120..10324 +
1692277809.873832-CDS-Ecto-sp9_F_contig1043:10119..103241692277809.873832-CDS-Ecto-sp9_F_contig1043:10119..10324Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1043 10120..10324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1043.414.1

>prot_Ecto-sp9_F_contig1043.414.1 ID=prot_Ecto-sp9_F_contig1043.414.1|Name=mRNA_Ecto-sp9_F_contig1043.414.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=262bp
MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKEIHE
LKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVA
GVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQ
TSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRL
KKVVEKKREAAAREQALKNELAAANKLLETDEALAASSAVSGGDDTMLDE
FDTQEQGDVYF*
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mRNA from alignment at Ecto-sp9_F_contig1043:6598..11317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1043.414.1 ID=mRNA_Ecto-sp9_F_contig1043.414.1|Name=mRNA_Ecto-sp9_F_contig1043.414.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4720bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:6598..11317+ (Ectocarpus species9 EcSCA_722f female)
AGCAGAGCACTGCTATTGCTCCAGCGACGCTGTACGCGTAGAAACAGCAG
GCACCATGTCCGCCCAACAGGTGGCGCCGACGCGCATGGCGCTCCAGATG
TACAAGGGGAAGCTTCTGGGCGCGAAGAAGGGCTACGAGCTTCTCAAGAA
GAAGTCAGATGCGCTAAAGGTGAGTTCAGACCGAGCGAGTGCCTCTGCCC
TTCTGTTGCACTCCCTGCAGCGCACCGGCCGTGTCACGTAGGACGAGGGT
GATAGAGCTGAGGAGACATGTGCTGGCTTGGTAGGGTCGCGTCTCCCGTG
GAAACGGCCAATGAGTTGGCTGTGACCCCTGCCCAGAATGAGATTGGTTC
CGCGCAAAGCTGAGTTCTCTTGAAAGGAGGTGGTGCATGGGTTTTCAGTT
CGATCTCGGTTTTGATGCGGAGAGCTCTCTTGAGCACGCAGGGCGTTGTA
CATGGTACTTGATGACCCCACGCTCTGCTTTGTTTGTCTCACCCGATTAG
ACGGAAAACTGAAGCCGCGCGCACGAATGTCGTCGTTGCTGTCTGTCTCT
GTGTAAAACTTCTCCGTTTTTCTTGTGTTGCTTCCCCAAATCGGCCAGGC
CCGATTCCGCAAAATCGCCAAAGAAATCCACGAGCTGAAGCAGGTCATGC
GTGAAGACGCCGCCACCGCGTTCTTTTCGCTCACCCAAGCGGCGCAGTAT
GTCGCAGGAGACTTCCGTGGGAAGGTACGGGGTTAATCGCCACGCGCTTG
TTATATCTACCCCGATGCGACAACGTACGTAGCTTGGCGGGTTCCATTGC
ACTATGTAGCAGACTTGGTGGACAATGTAGTCCTGCAACAGCGGCTGACG
ATAATCCTGCAACAGCGGCTGACTTGCGGAAGTGGTACATCAGTACTGCT
GTAGGCCAGTCGCTGTTTATCGCGTAGAAGGCGAAAGAGGGGGCGGTAAG
AGCTTTCAGAAACTTGTACTTGCGTATTTCAAGTGTACGGCGAAAGGGGA
CCCGGGTATTGGTGTTAACCCCTTGAGTACAGCCAAAGCTATCTCGGGAT
CCAACAGTTGACACATTAATCGCCTGTTTTCTGGTCACTTGCTTCTGGAA
CGGTGTCGAAACGAGGTTACTGCTGTACATCGGCTTATAAACGAAGTGTG
TGCGTACCTTCTGCTGCAAGCGGATGCCTCTTCGGGTTGAAATATTCCAA
TCGCCGTCGGACGTTCGTGTTGGTGATTGCCATGACTTGCAACACCTCGC
CTGACCATCTATCCTAGGCAACTCAAGTTGATACCATGTCCATTGACGTT
GAAACATCAAGGTTCGCTCTGCTGGTAACAGGTGACCAGGCACCAGTTAA
TCTTGTACCGCTGGTATGGACAACGGGCTCTCTCCGATATCGACGAAAGT
AGCATGTACACCCACAGCACCACCCTGCACGCTTCCACCGCATGAATTCT
TCTCCCCTCTTCAACATGTGGGATAGTAACCGTCGCTGTTGCATATGCGT
GTGCGTCTCGTGCTGCTGCTGCTGCTGCTGCTGCTTCCATGGCGGTGGCT
CTCCTCGGGGATGGCTCAACGGATAGGTGCTGGACACTCCACGGCCAGCG
GCCGTGCGGTGCAGGGCTAGGACAGACAACGTAGCGGGCGTCAAGCTTCC
GGTGTTCGAGTCGTACGAGACCGGGTCGGAGGTTCGTATGGTCTCGGTTT
GTTGCTGCACGCATTGGTGTTCTAGCCTCTTTGCTTGTTACAGTAGTGCT
CTTGTCTTGTAGAATCCGAGGCTCCCTCGTCGAGGTTTCAGGTGCACTCA
AGACCGCGCTGTCGTTGAGTGCCATCGAAGCGGCTAAGGTTCTAGCGATT
GCTTCATACTCGTTGGTCCAGTTAGACGCAGATGGTGTATCCTCATCGGC
TCTGCGATCTTTCCTCACGCCCCACGCCCCCCGTGCGCGCCGGCAACCTG
TTGTATTCTCTTTTTTGTTTTTTTGTGTCCTTTGTGTTGCGGACACGGCT
TCGGACCGCCTCCGTGAACACCGCGTCAGGCCAAGGATAACATCGGTCTA
GCCGGGGGTGGGCAGAAGGTGGGACAGTGCCGCGACAAGTACAAGGCCTG
GGTGGAGAACCTCATCAAGCTGGCGTCCCTGCAGACGTCGTTTGTCACCA
TGGACGAGGCGCTCAAGGTGCGCATGCCTAAAACTGACCGATTTTGTGGG
TTCTAGGTGATGATCTGGTTTGCCGTGTTTGCTGTGTTGACCGCGGTGTT
TCGCCGGTACGGTAACGGTGCTTTGCTTTTTCACGTCCTGGTGGCTCCCT
TTGCATCCTTCGGTTTCCCGTCACTCGGCTAAGCTGTGTTCTGGGGGCAG
CGCTTCCCTTGTTTTTGATCGTTTCATGAGGATAACATGAACGGGCTTGC
AGTACCGACATGGTAGGTCTAACGCTGAAATAGAAGGAAGCATATGCTCG
GTTTGTTTCACTTGGCTAAGGAGATTGTTGTGCGTTTTTCGGAGAGAAGG
GGTGGTGTGCTGGTCTGTTCCACCTGTCCTTGCACTCGCGTTGGTCGGAT
ATCGGAGGACGGGACCCCCTTGGCCTGCGTTGTGTTGTGCTTGGTTGTGC
GCTCTACGGAGATCCAAGGTCTGCTTGCTCTAGTAGTAGATCTAGTTGTA
TTGGGCGCTGTCTGTCGTGCCCCCCGCCGTGACATTTCTTTCTCTTTGGT
CATTGATCCCTCCTTCTCCCCCAAATGGTGGCAGGTAACGAACCGCCGCG
TTAACGCGCTGGAAAACGTGACGATCCCGCGAATGGAGGGAGTGATCAGC
TACATCAACAGGGAGCTGGACGAGCTGGAGAGGTAATGCCAGCAATATTT
TTGCGTTGGTTGCTTCATGCTACGTGTGGGGACAGTAGTACAGAAACGTA
TGCGTGGGTGGTTGTTGTTGCTGAAGGTTTCGTCATGTCTTTTGCCCCGC
TCGACAACAACGGCCGGTAGTCTCTGGTGCTCGCACAACACCCCAAAAGC
GTCGCGATAACCCTCGATTAGTAGAATGTGTGATAGTGTCGATGCTAGGG
CTTCTCGACCCTGTAGTCCACTTGGGTAGCGCAGAGAGCAAGACGCTACA
GCATTGGGCCGTGCATGGTGCATTTTCCCGCTCGTGGTGTGGCGAGGGTA
GGGTAGGGCATGCCTCTGCCCGTGATGACGCGGTCCTTGGTACGGAAAAT
CGAGCGAAGACTGCTTCCGTCTATCGTTTCTGTCCTGGTACGTAAACACC
ATATTCTATCGAATCGTGTACTCTCGCCACATGCGTTGACCAGGTTGGAT
TGGACGGAATTATTCCTGTTTGTATCACAACCAGCACATGACGACGTTCG
GCGTCAGTGTTGGTCACCTTCGATGTTGAAATTGATTGTTCTTGTATGGA
AAGAGTCAAGTTTACTTGGACCTGTTTGACATAGCCCACCACCACCGTTT
TCTCCGCCCGGCAACGGCATGTCTTTCCTCGATGAACTTTCGCGTTTGCA
TCTTGGGCGACAACAATCCCAGGGAGGACTTCACTCGGCTGAAGAAGGTG
GTGGAGAAGAAGCGCGAGGCGGCAGCTAGGGAGCAGGCACTCAAGAACGA
GTTGGCGGCCGCGAACAAGCTTCTCGAGACGGACGAAGCGCTCGCCGCTT
CCTCCGCCGTCAGCGGGGGAGACGACACGATGTTAGACGAGTTCGACACG
CAAGAGCAGGGAGACGTCTACTTTTGACGTTGTTTCTTCCTTGACCGTAG
TTTTGAGCGCGAGGCAGACCCAACGGGTCGTTTTTTTCGTGTGTTGGCTG
CGTGCAGCTCGAAGCATCCGTAACGGCGTCGGCGCGTCCTCTCCTCGGTA
GTCTACGATGGGTTTCATTTCTTGGGAATTGTTGATGATGACTATTGTTT
TTGGACCTATGATGCTGTGTTCATGTATTTTTTGTATTGCTAAACAGGTA
GCTTCACGCGGATGTTTGGTTGCAGGCGTTGCGAGTTGTTTTTTGTAAGG
GGGCAGATGTTTGTAGCGAGGATAGCTACCCCTGCCAACCTTTGAACGTT
TTTTCGCCCGATTTTGATGAACAAGGCAAAGTCGCCATGCAACCATGTCT
GGAGTGTACATGCATTGATGGTGATATGGAACATGAACGCCGTACGTCAA
TACTGTGTGACGACCCGGACTGTGTCATGGATGGACTTGCTGACGCCCAT
GGTTATTTTCCATTTTGGGTTTTCCCCATTTGATGATATTATTGACTACT
GCTGTTCCGCCCGATGGCACGGCCCGGTCCCACGCTAATATTGACGCGTT
CGACATGGACACATGCATGTACGCTCCAGGAGCGGTGGAGAACAGTTCCC
AACCGCAATAACACCGGTGAACCACGCTTTTCCCACGCTACTTCTGTTTC
AAGATTCGAGTCCCGAGAAAGACTTTCAGAGCATACAGTACGGATCATGC
TGTTGGGCACATTTCGCATAGGGAACCCTTGCAACTACAACTACGGTAGA
CCACGGTGTCACTCGGAGCTGTTCATGGCAAACAAGATTTAAGCGCACCC
AAGTCTGAACATAAAATTCTGAATCGGGCGCGGAGAGGCTCTATGTCGCC
CAAGGCAGTGACGCAAGCATTGCGTCCATTCATTGGTGACTGTAATCGAG
GTGCATCTCCCCAGAGCGGAATGCGGGCATCCAAACCGGCCACACCGCTT
GCATTAAGTGCGACCCCACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1043:6598..11317+

>mRNA_Ecto-sp9_F_contig1043.414.1 ID=mRNA_Ecto-sp9_F_contig1043.414.1|Name=mRNA_Ecto-sp9_F_contig1043.414.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1572bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:6598..11317+ (Ectocarpus species9 EcSCA_722f female)
ATGTCCGCCCAACAGGTGGCGCCGACGCGCATGGCGCTCCAGATGTACAA
GGGGAAGCTTCTGGGCGCGAAGAAGGGCTACGAGCTTCTCAAGAAGAAGT
CAGATGCGCTAAAGATGTCCGCCCAACAGGTGGCGCCGACGCGCATGGCG
CTCCAGATGTACAAGGGGAAGCTTCTGGGCGCGAAGAAGGGCTACGAGCT
TCTCAAGAAGAAGTCAGATGCGCTAAAGGCCCGATTCCGCAAAATCGCCA
AAGAAATCCACGAGCTGAAGCAGGTCATGCGTGAAGACGCCGCCACCGCG
TTCTTTTCGCTCACCCAAGCGGCGCAGTATGTCGCAGGAGACTTCCGTGG
GAAGGCCCGATTCCGCAAAATCGCCAAAGAAATCCACGAGCTGAAGCAGG
TCATGCGTGAAGACGCCGCCACCGCGTTCTTTTCGCTCACCCAAGCGGCG
CAGTATGTCGCAGGAGACTTCCGTGGGAAGGTGCTGGACACTCCACGGCC
AGCGGCCGTGCGGTGCAGGGCTAGGACAGACAACGTAGCGGGCGTCAAGC
TTCCGGTGTTCGAGTCGTACGAGACCGGGTCGGAGGTGCTGGACACTCCA
CGGCCAGCGGCCGTGCGGTGCAGGGCTAGGACAGACAACGTAGCGGGCGT
CAAGCTTCCGGTGTTCGAGTCGTACGAGACCGGGTCGGAGGCCAAGGATA
ACATCGGTCTAGCCGGGGGTGGGCAGAAGGTGGGACAGTGCCGCGACAAG
TACAAGGCCTGGGTGGAGAACCTCATCAAGCTGGCGTCCCTGCAGACGTC
GTTTGTCACCATGGACGAGGCGCTCAAGGCCAAGGATAACATCGGTCTAG
CCGGGGGTGGGCAGAAGGTGGGACAGTGCCGCGACAAGTACAAGGCCTGG
GTGGAGAACCTCATCAAGCTGGCGTCCCTGCAGACGTCGTTTGTCACCAT
GGACGAGGCGCTCAAGGTAACGAACCGCCGCGTTAACGCGCTGGAAAACG
TGACGATCCCGCGAATGGAGGGAGTGATCAGCTACATCAACAGGGAGCTG
GACGAGCTGGAGAGGTAACGAACCGCCGCGTTAACGCGCTGGAAAACGTG
ACGATCCCGCGAATGGAGGGAGTGATCAGCTACATCAACAGGGAGCTGGA
CGAGCTGGAGAGGGAGGACTTCACTCGGCTGAAGAAGGTGGTGGAGAAGA
AGCGCGAGGCGGCAGCTAGGGAGCAGGCACTCAAGAACGAGTTGGCGGCC
GCGAACAAGCTTCTCGAGACGGACGAAGCGCTCGCCGCTTCCTCCGCCGT
CAGCGGGGGAGACGACACGATGTTAGACGAGTTCGACACGCAAGAGCAGG
GAGACGTCTACTTTTGAGGAGGACTTCACTCGGCTGAAGAAGGTGGTGGA
GAAGAAGCGCGAGGCGGCAGCTAGGGAGCAGGCACTCAAGAACGAGTTGG
CGGCCGCGAACAAGCTTCTCGAGACGGACGAAGCGCTCGCCGCTTCCTCC
GCCGTCAGCGGGGGAGACGACACGATGTTAGACGAGTTCGACACGCAAGA
GCAGGGAGACGTCTACTTTTGA
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