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Homology
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5_ECTSI) HSP 1 Score: 309 bits (791), Expect = 3.410e-106 Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 1
Query: 1 MAVGIHLAHFPVCLAWFEAIMGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
MAVG+ L HFPVCLAWFEAIMGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDE+AIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF
Sbjct: 1 MAVGLRLTHFPVCLAWFEAIMGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDETAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 162
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: 60S (ribosomal protein L27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN1_9STRA) HSP 1 Score: 207 bits (526), Expect = 4.190e-66 Identity = 104/142 (73.24%), Postives = 123/142 (86.62%), Query Frame = 1
Query: 61 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
MGIIK+GKVV++LAGRYAGRKAIVVK +D GS +RKF HA+VAGIDRYPR+VTK+MSK K+ KR+K KPFVK+VNVNH+MPTRY DI+LK V+ESA KAS +VRKAV+K+FEERYLNQ +KSEKKA+G KYFF KL F
Sbjct: 1 MGIIKAGKVVIMLAGRYAGRKAIVVKAYDSGSADRKFTHALVAGIDRYPRKVTKSMSKVKVAKRSKCKPFVKFVNVNHLMPTRYTADIELKTVVEESAFKASRPEVRKAVKKVFEERYLNQGQIKSEKKASGSKYFFAKLAF 142
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: Uncharacterized (protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GB05_9STRA) HSP 1 Score: 198 bits (504), Expect = 2.640e-62 Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 1
Query: 1 MAVGIHLAHFPVCLAWFEAI-MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKA--SPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
+ +G+ A P + A MGIIK+GKVVVLL GR+AGRKAIVVK FDEG +RK+G AIVAGIDRYPR+VT++M K+KIKK++K+KPFVKYVN NH+MPTRY VDIDLKK +D+ + S + RK ++K+FEERYLNQ D SEKKATGV +FF+KLRF
Sbjct: 10 LLIGLEAADIPCSRHFLHAENMGIIKNGKVVVLLNGRFAGRKAIVVKAFDEGVGDRKYGFAIVAGIDRYPRKVTRSMGKNKIKKKSKIKPFVKYVNYNHMMPTRYIVDIDLKKVLDDDVMSKPESRVETRKTIKKVFEERYLNQADCSSEKKATGVSFFFKKLRF 174
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: Uncharacterized (protein n=21 Tax=Oomycota TaxID=4762 RepID=M4B173_HYAAE) HSP 1 Score: 197 bits (500), Expect = 4.050e-62 Identity = 100/144 (69.44%), Postives = 120/144 (83.33%), Query Frame = 1
Query: 61 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPTDV--RKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
MGI+K+GKVVVLL GR+AGRKAIVVK FDEG +RKFGHAIVAGIDRYPR+VT++MSK K+K+R+K+KPFVKYVN NHIMPTRY DIDLKK +D+ + T + RK ++K+FEERYLNQ KSEKKA GV +FF+KLRF
Sbjct: 1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGRGDRKFGHAIVAGIDRYPRKVTRSMSKAKVKQRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLGNPETRIESRKTIKKVFEERYLNQGSCKSEKKAAGVSFFFKKLRF 144
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: 60S (ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BF17_PYTIN) HSP 1 Score: 192 bits (488), Expect = 2.720e-60 Identity = 96/145 (66.21%), Postives = 123/145 (84.83%), Query Frame = 1
Query: 61 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
MGI+K+GKVV++L GR+AGRKA+VVK DEG +RKFGHAIVAGIDRYPR+VT+AMSK K+KK++K+KPF+K VN++H+MPTRY VDIDLKK +D+ + A+P + RK ++K+FEERYLNQ VKSEKKA GV +FF+KLRF
Sbjct: 1 MGIVKNGKVVIMLNGRFAGRKAVVVKTHDEGHGDRKFGHAIVAGIDRYPRKVTRAMSKTKLKKKSKVKPFIKVVNLSHVMPTRYVVDIDLKKVLDDEVL-ANPESRIESRKTIKKVFEERYLNQSAVKSEKKAAGVSFFFKKLRF 144
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: Platelet-activating (factor acetylhydrolase IB subunit alpha n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DKH9_PHYNI) HSP 1 Score: 193 bits (490), Expect = 3.330e-60 Identity = 99/142 (69.72%), Postives = 119/142 (83.80%), Query Frame = 1
Query: 70 IKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
+K+GKVVVLL GR+AGRKAIVVK FDEG +RKFGHAIVAGIDRYPR+VT+AM K+K+KKR+K+KPFVKYVN NHIMPTRY DIDLKK +D+ + A+P + RK ++K+FEERYLNQ KSEKKA GV +FF+KLRF
Sbjct: 32 VKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVL-ANPESRIESRKTIKKVFEERYLNQAACKSEKKAAGVSFFFKKLRF 172
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: 60S (ribosomal protein L27 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SWS4_9DINO) HSP 1 Score: 191 bits (486), Expect = 5.300e-60 Identity = 94/136 (69.12%), Postives = 117/136 (86.03%), Query Frame = 1
Query: 61 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYF 468
MGIIKSGKVVV+LAGRYAGRKA+VVK +D+GS +RKF HA+V GIDRYP++VTK M+K KI KR+K+KPF+K +N+NH+MPTRY VD+DLKK VDE+A K + + RK V+KIFE+RYLNQ KSEKKA+GV+YF
Sbjct: 8 MGIIKSGKVVVVLAGRYAGRKAVVVKTYDDGSIDRKFSHAMVVGIDRYPKKVTKGMTKTKITKRSKMKPFLKCINLNHLMPTRYSVDMDLKKTVDEAAFKEAKKETRKTVKKIFEDRYLNQASGKSEKKASGVQYF 143
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: 60S (ribosomal protein L27 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1L5V7_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.200e-59 Identity = 90/142 (63.38%), Postives = 116/142 (81.69%), Query Frame = 1
Query: 61 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
MG+IKSGKVV++L GR+AGRKAIVVK +D+G+ R+F HA+VAGIDR PR+VT++MSK+KI+KRTK+KPF+KYVN H+MPTRY VD+DLKK VDES +K + RKA++K+FEERY Q K EKKA G YF++K+ F
Sbjct: 1 MGVIKSGKVVIVLQGRFAGRKAIVVKAYDDGNAERRFAHAMVAGIDRAPRKVTRSMSKEKIQKRTKMKPFLKYVNYTHLMPTRYVVDLDLKKIVDESGLKEGKAEARKAIKKVFEERYHQQSSAKXEKKAAGTMYFYKKMAF 142
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: 60S (ribosomal protein L27 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X5C3_SYMMI) HSP 1 Score: 187 bits (474), Expect = 3.120e-58 Identity = 97/140 (69.29%), Postives = 114/140 (81.43%), Query Frame = 1
Query: 70 IKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASP-TDVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
IKSGKVV+LLAGRYAGRKA+VVK D+GS+ ++FGHAIVAGIDRYPR+V KAM K KI+KRTK+KPFVK VN NHIMPTRY D DLKK VDE A+ + D RK ++K+FEE+Y NQ KSEKKA G +YFF+KLRF
Sbjct: 1 IKSGKVVILLAGRYAGRKAVVVKTNDDGSDGKRFGHAIVAGIDRYPRKVVKAMGKAKIEKRTKIKPFVKVVNFNHIMPTRYAADFDLKKVVDEKALSSEARVDTRKNLKKVFEEKYRNQSS-KSEKKAGGTQYFFKKLRF 139
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Match: Uncharacterized (protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397BII5_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.090e-57 Identity = 94/142 (66.20%), Postives = 117/142 (82.39%), Query Frame = 1
Query: 70 IKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDESAIKASPT---DVRKAVRKIFEERYLNQKDVKSEKKATGVKYFFEKLRF 486
+K+GKVVVLL GRYAGRKAIVVK +DEG +RKFGHAIVAGIDRYPR++T++M K K+ KR+K+KPFVKYVN NHI+PTRY DI+LKK VD+ + A+P + RK ++K+FE+RYLNQ KSEKKA GV +FF+KLRF
Sbjct: 16 VKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVTKRSKIKPFVKYVNYNHILPTRYVADIELKKVVDDEVL-ATPEARIESRKIIKKVFEDRYLNQGATKSEKKAAGVSFFFKKLRF 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1043.413.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 3.410e-106 | 97.53 | protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5... | [more] |
| 60S | 4.190e-66 | 73.24 | ribosomal protein L27 n=1 Tax=Tribonema minus TaxI... | [more] |
| Uncharacterized | 2.640e-62 | 63.03 | protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GB0... | [more] |
| Uncharacterized | 4.050e-62 | 69.44 | protein n=21 Tax=Oomycota TaxID=4762 RepID=M4B173_... | [more] |
| 60S | 2.720e-60 | 66.21 | ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759... | [more] |
| Platelet-activating | 3.330e-60 | 69.72 | factor acetylhydrolase IB subunit alpha n=2 Tax=Pe... | [more] |
| 60S | 5.300e-60 | 69.12 | ribosomal protein L27 (Fragment) n=1 Tax=Alexandri... | [more] |
| 60S | 4.200e-59 | 63.38 | ribosomal protein L27 n=1 Tax=Pelagomonas calceola... | [more] |
| 60S | 3.120e-58 | 69.29 | ribosomal protein L27 (Fragment) n=1 Tax=Symbiodin... | [more] |
| Uncharacterized | 1.090e-57 | 66.20 | protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 309.7 |
| Seed ortholog evalue | 8.2e-82 |
| Seed eggNOG ortholog | 2880.D7FLL5 |
| Preferred name | RPL27 |
| KEGG rclass | RC00017 |
| KEGG ko | ko:K02901,ko:K05288 |
| KEGG Reaction | R05923,R08107 |
| KEGG Pathway | ko00563,ko01100,ko03010,map00563,map01100,map03010 |
| KEGG Module | M00177 |
| GOs | GO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904 |
| EggNOG free text desc. | ribosomal large subunit biogenesis |
| EggNOG OGs | COG2163@1,KOG3418@2759 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ribosomal protein L27e |
| Ec32 ortholog | Ec-17_000680.1 |
| Exons | 4 |
| Model size | 489 |
| Cds size | 489 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928251.7257032-CDS-Ecto-sp9_F_contig1043:1315..1496 | 1622928251.7257032-CDS-Ecto-sp9_F_contig1043:1315..1496 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 1316..1496 - |
| 1692277809.7644346-CDS-Ecto-sp9_F_contig1043:1315..1496 | 1692277809.7644346-CDS-Ecto-sp9_F_contig1043:1315..1496 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 1316..1496 - |
| 1622928251.7401776-CDS-Ecto-sp9_F_contig1043:4782..4877 | 1622928251.7401776-CDS-Ecto-sp9_F_contig1043:4782..4877 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 4783..4877 - |
| 1692277809.7757761-CDS-Ecto-sp9_F_contig1043:4782..4877 | 1692277809.7757761-CDS-Ecto-sp9_F_contig1043:4782..4877 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 4783..4877 - |
| 1622928251.756277-CDS-Ecto-sp9_F_contig1043:5881..6026 | 1622928251.756277-CDS-Ecto-sp9_F_contig1043:5881..6026 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 5882..6026 - |
| 1692277809.7848375-CDS-Ecto-sp9_F_contig1043:5881..6026 | 1692277809.7848375-CDS-Ecto-sp9_F_contig1043:5881..6026 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 5882..6026 - |
| 1622928251.7671664-CDS-Ecto-sp9_F_contig1043:6404..6472 | 1622928251.7671664-CDS-Ecto-sp9_F_contig1043:6404..6472 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 6405..6472 - |
| 1692277809.7971153-CDS-Ecto-sp9_F_contig1043:6404..6472 | 1692277809.7971153-CDS-Ecto-sp9_F_contig1043:6404..6472 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig1043 6405..6472 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1043.413.1 >prot_Ecto-sp9_F_contig1043.413.1 ID=prot_Ecto-sp9_F_contig1043.413.1|Name=mRNA_Ecto-sp9_F_contig1043.413.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=163bp
MAVGIHLAHFPVCLAWFEAIMGIIKSGKVVVLLAGRYAGRKAIVVKPFDE
GSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIM
PTRYQVDIDLKKAVDESAIKASPTDVRKAVRKIFEERYLNQKDVKSEKKA
TGVKYFFEKLRF* back to topmRNA from alignment at Ecto-sp9_F_contig1043:1316..6472- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig1043.413.1 ID=mRNA_Ecto-sp9_F_contig1043.413.1|Name=mRNA_Ecto-sp9_F_contig1043.413.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5157bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:1316..6472- (Ectocarpus species9 EcSCA_722f female)
ATGGCTGTGGGCATCCACCTGGCCCACTTTCCTGTGTGTCTCGCCTGGTT
CGAAGCCATCATGGGGATGTGAGTGTACGGGGTAGCTGGCTTCGGGGAGA
GATTCCTTGGGTATGAACCCTGCTCCTTTGCGTCGATGATGTTAGCCGCT
CGTAACGCGATGGTGTGTTTTGGGACGTTTGCGTTGTGGATGCCCGCCCT
CTCTTGTCTCCCTTGTCCCAGCGGCAGCGTGAACTCGCCTGGAAATGCTG
CCCCCTGCTTTAGTTTCTGCCGGCGTGGCTTCAGCAATAGCACAGCAGTC
TACGGTTCCGATAGATTCTGCATGTGCAAGGATTTCCTGGTGCTTTGGTT
GGTTTCCTTTCTCTTGCGCGCAACTCTCAACCTGACAATGTCCCTCTCTG
TCCCTCCTGCCCACACACGAACCACTTGCCTCCTGACGGCGAACAGCATC
AAGTCGGGCAAGGTCGTTGTCCTGCTGGCCGGGCGCTACGCTGGCCGCAA
GGCTATCGTGGTGAAGCCTTTTGACGAGGGCTCCGAGAACCGCAAGTTCG
GCCACGCCATCGTGGCTGGCATCGACCGTTACCCTCGCAGGGTAAGAAAC
ACAAGAAAATATCTGGAGAAAAACAACGGGTGCCATGCACACCGCTGCTG
CTTGTTGGTATGTGTGGTACTCTCTTCCATGGGCGACTGTGTCAAGCGCT
TAGAAGACGGGGTAACAGCACTTCGCAATCGATGCCCGTCTACTGCTGTC
GCTTTGGTAGTGCAGCACGGAGGAAAGAGACGAAACCTGTTGGGACGCTC
CAAGCAGCACCCGGTGCTACAACAATCGTACGGGAGACACGACATCCGCT
ATTCGTACGGAAGACACCATACCCCGTGTATCTTACACATCGACACGGCA
GCAATCGACGCTTCCGTGCACAGCTGGAGAGATTTTCTTTTGGAGTGTTC
TAGAGACAAAGGGAGTCGTTGGCGTTGCCTAGTGGAGAGGTTCGAAGGAC
ATGGGCACGATTTTGGGTTGCAAATATTACATGTATACCCCTTTCTATCG
ATACTGCTGTAATTTTTTTTTTGTCGACGTGCGAAAATCAGTCAGGGGGA
TACAGATTGTACAGCAGTCAAGAGTAGAACGGTGCAGCATCTCAATCTCA
TCCAACACGCGGTGTACGACAAATACGCAAATACGGCGCACGTGTCCCCC
CCCCCGTTGGAAATAACCCAGGTTTTCGAGTGTGCCGGTTTCCCGGCTTC
TTCGGCTTTTGATGTTTGATGCCCTTCGCGTTGAAATTCTTATACTAGAC
GGACGCCACCGTAGCCTCTTTTCGCACGACGAATAGCGGTGAGTTGTAGA
GCAAGGAGGAGACGTGTAACATCCCGCCCTGAAGTTGGACCAACAGAAAT
CGGCGGTGGGCTATTTTTTTTTTAATTTGGCCATTCCGATCCCCACGGCC
GACATTCCGAGGAGCCTTACTCTATTTTGCTTTTTTTCACCCTGCTGTCT
TGCCGGTGTTCCGTTGATCCAAGCAGCGCATGTGTGTGTAATGCTCTCTC
CTCGTTTTCCTCTCACCTATGCATACGACCGAAATGTAAAAACAGGTGAC
GAAGGCGATGAGCAAGGACAAGATCAAGAAGCGCACGAAGCTGAAGCCGT
TCGTCAAGTACGTCAACGTCAACCACATCATGCCCACCCGGTAAGTCTTG
GGACTTTAGGCACGCACGCTTTCGCTCTCCTACCGCACACACCCCCACTC
AACTCGCCGACCACCCCATCCCTCATTTGACTAAGTGAGGGGTGGGTGGG
AGGATGTGTACATTGAAGGTCGCAGATATTTTCGCGGTTATCCATGTCGT
CTAAATCGATATTTCGTAACAAGAAGGAGGGTGTCCTTGTCAAAGAGATG
CTTGCGTCAAAAGCGTTTGTTTTCTTTGGCAAACTCACCCTCCCCCTTGA
GATATTGACGGCGGCGATACGCTTTTATATGCGAGCTTTGCGGTACACCA
TCCTAGCGGCGAGAGGGGTGGGGAGTTGACGGGCAGGAGAGAGAAGGCGT
GGTCAGTGTGCGGCGACGCAGTCCCCGGTCATGGAACGGTTTTACCGTAC
CGTACATCTCCGCAAGAGACCCCTCCGCTCCACCTCACGCGGGTGATTAT
CCAGAGTCGATTGCACAAACAGGAAGAGAGGGGGGGTGTCATTACGCGAA
AGAGCATCTTCGAAAAAATCGCAATCCTGAGTGAGCATTCCACGAATGTT
TCCCTCGTCGAGATTTTTGGCGATTGTCCTCGTTAGTGTTTTGCAACGCC
CTCCCTTCCTGTGTTGACTATCGACCTTGGATATTTGTTCACGTAAGGGA
GGGGGGGGGAGGGGGTAGTCTCCTGTTGGATGTACGGCACACAAACCCTG
ATCCCACCCCTTAACACTTCACCGGCACCAGTCGCCGTGTAGTGAAGGTG
AAAAGGGTGGGGTTGGGGGCAACCGATCCTTGGTCGTGAGCCTTTTGAGT
GTTGAGTGAAGCTGTTGTGCCTTATTTTTTTGTGGTTTGTCTTTACAAAT
TTCTACAGCGATGGAAACGTCATGCTCGTTGCTGGAACACATACGAATCT
GGCCTGTTGCCGATGTAGGTCAAGGGGATTACACACTGCCGCTGATGGTA
CGGACCATTTGGCATACGACATTTTGATCTCTTTCGAGCAACCCGTGGCT
AGTGAACACTTGAGTATGTCCTTGCTCGCTCGGGTCTTGAAGAATCACGA
ACAAAATCTATGGCCTTTCCGTCGAAATCTCGACGGGCTCGCCCTTCGTT
CTGCGGCGAGGTCATGTGGGATCGTTTGACTCGTGCATGTTGTTCCGGCA
AAGCGTTTGATACGGGCATGTTCGGGTGACCTTTGCATCTCGATGGTCGT
TGTTTTTGCCGTCTCTGTTTACTTATCTGGAGGTGTGCGTACCTTTGGGG
GTATTCGTCGCTCCATCCCATGGACATGCCCAAACGAAGATCGGGCACAT
GATGCCCCGAAGCCATGGCCTCTCGAAGGCTCAAACGCAAGGGGCTGGAA
ACTTTTTTTTTTCCCGCCACACATATCTGGTCGCTTTCGCCTCGAGACAA
ACATACATTGAACCATGAAATGAGCAGCGTTTTTGGGACTCGAAAGAAAC
CCGTCTCTGCAAAACGCCAAGACAGTAGTGGCACGCACAAAAACCGAGCC
CATTTCCGTGAAGAATGGTGTATCGTTAACCTCCCACCCTTTCCCCCCAT
TACATTGTGGTGCATCAAATTCACATTTCCGGAACATGGGTGTGTTGGTT
GTTCAATGTTTCTCGGCGTTTTGTTAGTTTTTGAAACGGGAAAGGTGCTT
TTTGAAAAAAAACACGGCGGATGTTCCCGATGTGTAGATCCGACCGGTGG
ATTTCACCTGCAAACGTCTCGGGGCGACGATCACCAGACGGTGATGCCCG
AAGGAATGCCTTCGTGTTCGAACGGGAGTCTGGCTTACACGTGTTGTGTG
CTCTTGGCACGTTTCCGTGAGAGAGAGAGAGAGAGAAACCGTGTATGGCC
AGACTCCCGTTCGAACACATCGACAATCCTTCGGGCATCACCGTCCTGTG
ATCTTCGCACCGTCACGTTTCATGAGCGAGAGGAACTTTAATATTTCGTC
GTTTGCCCCTCCGCTTTCCGGGGCGCAAGACGGATGTTGTTCCTGCGGGG
CCGCTTCTAAAAGACAAATCCAATTTTCGGCAGCAGCCTTGTGAGAGAAT
GACCGCACGCGTGTTGGATCGACCCGATGCTTCGCCGAAAAAGTCTCCGC
TAGTGACACTGCCGCAGTATGGTGTCGCCATGACACCCTTGAAAGCTTTT
GATTGTTCCCCCTCGTCTTCCTTTCTATGCACAGTCTCGTTTCGAAGAAT
GAAAAACGGTCGAATGGAGACGCGAGACCGATACGTACTGCTAGATTGGC
TCGTACTTTTTCTAGATGCGATGAATGCTCCCCTGAAAATCATAACATGT
TCTTTTATTTTCTCTCGCAAAACAATGTATAACCAGTTCTGTTACTTTCT
TCTCACGAAAGGGTAGGCTCTGCTGCCGATAACGGAACGACCTATCCAAA
ACAACTTCACTGAGCCGTCTCCTTATGTGTCTCTGACCTCTTTCGGGTTT
CGAAGGGCGCCTTCTCTCTCGTCTATCTTGTCTGCACCGAGTTAGGGCGT
GGGTACGTCTTTTGCCTCAATCTTTAACTCGTCGGTTAACTTGCTTCGCG
TTGGGCGATATGGTCGGAGAGATGGATGTTGGAGGCACGTTTGATTGTTC
GAATATACATCTTGGGCGCCCATGCCTTGAGGACACGTAGAAGAGCGCAC
CTGTGTCGTCCCGTTGAGCCGTCAAGGTTCGGCCGCTCGAAAGAACGGTG
CCAGCATCTCCAGAGACCCTTGCTGATGATTGTCGAGCGCTGTCGCCAGT
CGAGCGATGCCAGTCTCAGTGCTGTTGCGCTCGCGAATCCAGTATCGGAA
TCGAAATGGCTGGACCGTTGTCTCTCTTCGCCCAGGAATTTTCGTTACGC
GATGGAGAAGCATGCACTCAGAACACAACCCACCCGTCCCTTGGCGCATG
AATCGCGAGTTTCGGGGGGGTGTGGTGATGGCTACGGCTTGAACAGTCAC
GCACAGAAGATACGTGTGCGTGGTCCACGTCACTGGCATCGTGCCCTTCT
TGGTCCCCCCCCCCCTCCAAAGCCGTTCCTGACACTACTCTCTAGTACAG
TGTCACCATCTCGTCACTGTGTTGTGCTGACAACGTGATGGCCCCACGGC
GATGTCTTGAAAAAGGGCATGGAAAAGCCGAGAGATGCCCACACCCGCAA
TCTCCCGAGAACGGGCACAAGGCTCTCACTGCCCGTTCAGGGGTAGAAAA
AAAGTTTTACGGAACGATACGGATTGCGATGATGCCGCCGCCCTTCCCTC
TGCCGCCCTCTTGACGGATCGACCAGGTACCAGGTGGACATCGACCTCAA
GAAGGCCGTGGATGAGTCTGCCATCAAGGCCTCCCCCACGGACGTTCGCA
AGGCGGTGAGGAAGATCTTCGAGGAGAGGTACCTGAACCAGAAGGACGTC
AAGTCCGAGAAGAAGGCCACCGGCGTCAAGTACTTCTTCGAGAAGCTCCG
CTTCTAA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig1043:1316..6472- >mRNA_Ecto-sp9_F_contig1043.413.1 ID=mRNA_Ecto-sp9_F_contig1043.413.1|Name=mRNA_Ecto-sp9_F_contig1043.413.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1043:1316..6472- (Ectocarpus species9 EcSCA_722f female)
ATGGCTGTGGGCATCCACCTGGCCCACTTTCCTGTGTGTCTCGCCTGGTT
CGAAGCCATCATGGGGATATGGCTGTGGGCATCCACCTGGCCCACTTTCC
TGTGTGTCTCGCCTGGTTCGAAGCCATCATGGGGATCATCAAGTCGGGCA
AGGTCGTTGTCCTGCTGGCCGGGCGCTACGCTGGCCGCAAGGCTATCGTG
GTGAAGCCTTTTGACGAGGGCTCCGAGAACCGCAAGTTCGGCCACGCCAT
CGTGGCTGGCATCGACCGTTACCCTCGCAGGCATCAAGTCGGGCAAGGTC
GTTGTCCTGCTGGCCGGGCGCTACGCTGGCCGCAAGGCTATCGTGGTGAA
GCCTTTTGACGAGGGCTCCGAGAACCGCAAGTTCGGCCACGCCATCGTGG
CTGGCATCGACCGTTACCCTCGCAGGGTGACGAAGGCGATGAGCAAGGAC
AAGATCAAGAAGCGCACGAAGCTGAAGCCGTTCGTCAAGTACGTCAACGT
CAACCACATCATGCCCACCCGGTGACGAAGGCGATGAGCAAGGACAAGAT
CAAGAAGCGCACGAAGCTGAAGCCGTTCGTCAAGTACGTCAACGTCAACC
ACATCATGCCCACCCGGTACCAGGTGGACATCGACCTCAAGAAGGCCGTG
GATGAGTCTGCCATCAAGGCCTCCCCCACGGACGTTCGCAAGGCGGTGAG
GAAGATCTTCGAGGAGAGGTACCTGAACCAGAAGGACGTCAAGTCCGAGA
AGAAGGCCACCGGCGTCAAGTACTTCTTCGAGAAGCTCCGCTTCTAAGTA
CCAGGTGGACATCGACCTCAAGAAGGCCGTGGATGAGTCTGCCATCAAGG
CCTCCCCCACGGACGTTCGCAAGGCGGTGAGGAAGATCTTCGAGGAGAGG
TACCTGAACCAGAAGGACGTCAAGTCCGAGAAGAAGGCCACCGGCGTCAA
GTACTTCTTCGAGAAGCTCCGCTTCTAA back to top
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