mRNA_Ecto-sp9_F_contig10421.410.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE) HSP 1 Score: 285 bits (730), Expect = 7.210e-94 Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 1
Query: 1 VKNKMYGKTDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNV 435
VKN MYGKTDSF GEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCS SNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDG KDGEET+TN+
Sbjct: 99 VKNTMYGKTDSFPGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSFSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGHKDGEETHTNL 243
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Solute (carrier family 35, member B1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP3_9STRA) HSP 1 Score: 167 bits (423), Expect = 6.780e-48 Identity = 82/135 (60.74%), Postives = 101/135 (74.81%), Query Frame = 1
Query: 25 TDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNT 429
T ++ GEKFPS F+VF NRLLA++VAA +V P R P P+AP + FAPCS SNV+SS+ QY L +ISFPMQVVSKSCKV+PVMLVGKFVH KSYPW+EY+EAV I +GVS+FSL++S D + T
Sbjct: 86 TITYDGEKFPSSTFVVFSNRLLALLVAAALVYGPSLR-PGNATRPKAPLVQFAPCSFSNVLSSWAQYECLKYISFPMQVVSKSCKVIPVMLVGKFVHHKSYPWIEYIEAVGITVGVSMFSLNESSAKDDEDARQT 219
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLE1_HETAK) HSP 1 Score: 149 bits (376), Expect = 1.440e-40 Identity = 74/135 (54.81%), Postives = 98/135 (72.59%), Query Frame = 1
Query: 37 AGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNVRL 441
+G+ FPS FLVFGNR +A+ VA +V P R A +AP + +APCSLSNV+SS+ QY+ L +++FP+QVVSKSCK++PVMLVGKFVHGKSYP EYLEA+ I +GVSLF+LS+ P G +T + +
Sbjct: 124 SGDMFPSATFLVFGNRAIAIWVALALVYYPQLRHGAR-LEKKAPLVWYAPCSLSNVLSSWAQYQCLKYVTFPVQVVSKSCKIIPVMLVGKFVHGKSYPIAEYLEALVITIGVSLFTLSEKQDPGKGAAESTTLGI 257
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V172_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.060e-34 Identity = 70/133 (52.63%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 49 FPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPK----DGEETNTNV 435
FPS F VFGNR LA+ VAA + P+ + AP+ ++PCSLSNV+SS+ QY L ++SFP+QVVSKSCKV+PVMLVGK VH K+Y WVEY EA I +GVS+F+L+Q G D E+ T V
Sbjct: 101 FPSSTFCVFGNRFLAIFVAAAFLYYPVYFK-GQKLEHSAPFYWYSPCSLSNVLSSWAQYECLKYVSFPVQVVSKSCKVIPVMLVGKMVHRKTYDWVEYSEAFFITLGVSIFTLAQQTGGAHKEGDAEKVTTAV 232
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Solute (carrier family 35 member b2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWN3_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.210e-33 Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 10 KMYGKTDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPL-RREPAGGWAPQ---APWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNVRL 441
K YG + E FPS FLVFGNR LA+VV+A +V P R PQ AP +AP SLSN++SS+ QY AL ++SFP QV+SKS K++PVMLVG+ +H +SYPW EY++A I +GV++FSL++ PK G + + L
Sbjct: 162 KAYG--EGADAEFFPSSAFLVFGNRALALVVSATIVYWPWSNRSNTDAVVPQGLKAPLWQYAPASLSNILSSWAQYEALKYVSFPTQVLSKSSKIIPVMLVGRLLHRRSYPWAEYVDAALITLGVTIFSLNEKK-PKAGHDGGADSTL 306
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Hypothetical (protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0APC8_9DINO) HSP 1 Score: 129 bits (323), Expect = 1.670e-33 Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 1
Query: 25 TDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNVR 438
T +A KFPS F VF NR+LA+ +AA ++ LRR G +AP ++FAPCSLSN SSF QY+AL F+SFP+Q +SKS KV+PVMLVG+ V+ + Y VEY EA+ I+ GVS+FSLS+ G D + T +R
Sbjct: 41 TTEYATGKFPSATFCVFSNRVLAIAIAAAIM---LRRH--GRMEIRAPLMAFAPCSLSNSFSSFAQYQALRFVSFPLQTLSKSSKVIPVMLVGRLVNKRKYSLVEYAEALTISAGVSVFSLSEWTGRAD-DSIETKLR 172
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWW3_AURAN) HSP 1 Score: 133 bits (334), Expect = 2.490e-33 Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 49 FPSDVFLVFGNRLLAMVVAAGMVMLPLR--REPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNV 435
FPS VFLV NR LA+VVA ++ R R+PA P+AP+ F+PCS+SN++SS+ QY L ++SFP Q + KS KV+PVMLVGKF H K+YPW+EY+EAV I +GV+LF L++ G+ +V
Sbjct: 467 FPSTVFLVCANRALALVVAGALMTYKSRVLRQPA----PRAPFYQFSPCSISNIVSSWAQYECLKYVSFPTQTLFKSSKVIPVMLVGKFFHKKNYPWIEYVEAVGITLGVALFMLTEKAKKGGGDGAGDSV 593
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEY5_AURAN) HSP 1 Score: 127 bits (319), Expect = 5.400e-33 Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 1
Query: 25 TDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDG---PKDGEETNTNV 435
T + +FPS F VF NR LA++VAAG+ + + G A +++FAPC+ SN +SSF QY+AL ++SFP+Q +SKS KV+PVML+GKF++ K+YP V+Y+EA+ I++GV +FSL+ D GEE+ NV
Sbjct: 24 TREYTTGRFPSATFCVFSNRFLAVIVAAGITLF----QHGGKLTLPASYVAFAPCAFSNSLSSFGQYQALRYVSFPLQTISKSTKVIPVMLMGKFLNKKTYPPVDYVEALCISLGVCVFSLANLDDGALASGGEESEGNV 159
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HMN6_9STRA) HSP 1 Score: 127 bits (319), Expect = 9.150e-33 Identity = 70/142 (49.30%), Postives = 93/142 (65.49%), Query Frame = 1
Query: 16 YGKTDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEETNTNVRL 441
YG T KFPS FLVF NR LA+ VAA ML R G + AP+ F+PCS+SNV+SS+ QY AL ++SFP+QV+ KS K++PVML+G F+HG Y +YLEA+AIA GV++F+ S+S G K+ E + L
Sbjct: 55 YGPTPRVPSGKFPSATFLVFANRFLAIFVAA---MLCYNRH--GTLSSGAPFWYFSPCSMSNVLSSYGQYAALKYVSFPLQVLFKSTKLIPVMLMGTFLHGGKYTPRDYLEAMAIAAGVAIFTFSKSSGGKEVETEPIGILL 191
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Match: Hypothetical (protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2X730_EMIHU) HSP 1 Score: 126 bits (317), Expect = 4.320e-32 Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query: 25 TDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQAPWLSFAPCSLSNVMSSFCQYRALNFISFPMQVVSKSCKVVPVMLVGKFVHGKSYPWVEYLEAVAIAMGVSLFSLSQSDGPKDGEET 423
T + KFPS F VF NR+LA+VVA + + R AP+ +FAPCS+SN +SS+ QY AL+++SF +Q +SKS KV+PVML+GK ++ KSY W+EY+EA+ I+ GVSLFS S+ P D + T
Sbjct: 105 TKEYTTGKFPSATFCVFSNRVLAIVVAMAAMGIQHRSLKI-----PAPFYAFAPCSISNTLSSYGQYEALHYVSFGLQTLSKSTKVIPVMLMGKLLNKKSYKWIEYVEALMISFGVSLFSFSEKSAPGDDKTT 232 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10421.410.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10421.410.1 >prot_Ecto-sp9_F_contig10421.410.1 ID=prot_Ecto-sp9_F_contig10421.410.1|Name=mRNA_Ecto-sp9_F_contig10421.410.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=144bp MYGKTDSFAGEKFPSDVFLVFGNRLLAMVVAAGMVMLPLRREPAGGWAPQback to top mRNA from alignment at Ecto-sp9_F_contig10421:266..4350+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10421.410.1 ID=mRNA_Ecto-sp9_F_contig10421.410.1|Name=mRNA_Ecto-sp9_F_contig10421.410.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4085bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10421:266..4350+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10421:266..4350+ >mRNA_Ecto-sp9_F_contig10421.410.1 ID=mRNA_Ecto-sp9_F_contig10421.410.1|Name=mRNA_Ecto-sp9_F_contig10421.410.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10421:266..4350+ (Ectocarpus species9 EcSCA_722f female)back to top |