mRNA_Ecto-sp9_F_contig1042.407.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1042.407.1
Unique NamemRNA_Ecto-sp9_F_contig1042.407.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 8.190e-115
Identity = 201/240 (83.75%), Postives = 212/240 (88.33%), Query Frame = 2 
Query:  479 LGMISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERVG--RPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            LGMISGRLDKVLESTQESLMRL DLQAPN   P   VVKEV SDGTASKARG KSMLSKL G+GKKDMTLQFLCPVDMT+VPCGYGGEGYRFKETRSWVKKISPVL+VAVVTAKVALNATTG++VDISDFLKDV DGLVEELVDRTLD+EALLRAVLGDDNI ADL+RDTRASYEALKKFMDK QIERV   R G  ++     +DE   + DGRGGMVWVRNENVQKWLDSRSIAAPTR
Sbjct: 1076 LGMISGRLDKVLESTQESLMRLRDLQAPNYRYPRLVVVKEVGSDGTASKARGRKSMLSKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDF---RDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPTR 1312
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 3.450e-114
Identity = 192/294 (65.31%), Postives = 220/294 (74.83%), Query Frame = 2 
Query:  383 KGEMKEGFYETKVEMEGGFGDTKTKLCDVKDEL----------------------GMISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            +GE+     +    + GGF + +  + ++K E+                       MISGRLDKVLESTQESLMR+  LQAPN   P   VVKEV SDGTASKA G KS+LSKLR +GKKDMTL FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTAKVALNATTG++VDIS+FLKDV DGLV ELVDRTLDE ALLRAV GDD+I A+L+RDTRASYEALKKFMDK Q++RV   R G  ++     +DE   +TDGRGGMVWVRN+NVQKWLDS SIAAPTR
Sbjct:    7 QGELIRKIDDVATAVTGGFAEVEGGISNLKGEMKXXXXXXXXXXXXXXXXXXXXXXMISGRLDKVLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDF---RDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 296
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 6.820e-112
Identity = 193/262 (73.66%), Postives = 216/262 (82.44%), Query Frame = 2 
Query:  425 MEGGFGDTKTKLC----DVKDELGMISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            ++GGF DT T+L     +VKD   MISGRLDKVLESTQESLMR+  LQAPN   P   VVKEV SDGTASKA G KS+LSKLR +GKKDMTL FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTAKVALNATTG++VDIS+FLKDV DGLV ELVDRTLDE ALLRAV GDD+I A+L+ DTRASYEALKKFMD+ Q++RV   R G  ++     +DE   +TDGRGGMVWVRN+NVQKWLDS SIAAPTR
Sbjct:  483 VKGGFHDTNTELRGVKKEVKDGFSMISGRLDKVLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRLLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDL---RDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 740
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 2.510e-108
Identity = 184/245 (75.10%), Postives = 208/245 (84.90%), Query Frame = 2 
Query:  464 DVKDELGMISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            ++KD   MIS RLDKVLESTQESLMR+ +LQAPN   P   VVKEV SDGTASKA G KS+LSKLR +GKKDMTL FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTA+VALNATTG++V+IS+FL+DV DGLV ELVDRTLDEEALLRAV GDD+I A+L+RDTRASYEALKKFMDK Q++RV   R G  ++     +DE   +TDGRGGMVWVRN+NVQKWLDS SIAAPTR
Sbjct:  556 EMKDGFIMISERLDKVLESTQESLMRIRNLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDF---RDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 797
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 4.110e-102
Identity = 176/231 (76.19%), Postives = 198/231 (85.71%), Query Frame = 2 
Query:  506 KVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            KVLEST+ESLMR+ +LQAPN   P   VVKEV +DGTASKA G KS+LSKLR +GKKDMTL FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTAKVALNATTG++VDIS+FLKDV DGLV ELVDRT+DEEALLRAV GDD+I A+L+RDTRASYEALKKFMDK Q++RV   R G  ++     +DE   +TDGRGGMVWVRN+NVQKWLDS SIAAPTR
Sbjct:  738 KVLESTKESLMRIRNLQAPNYRYPRLVVVKEVGADGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDF---RDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 965
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.070e-97
Identity = 166/237 (70.04%), Postives = 190/237 (80.17%), Query Frame = 2 
Query:  488 ISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSML-SKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEACLTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            + G LDKVLES+QESLMRL DLQA N   P   +VKE    G +SKA G K  L +K RG+GKKDM L FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTAKVALNATTG+NVDISDFLKDV DGLVEELVDRTLDE+ALLRAVLG+D+I AD++RDTRASYEALK FM+  +  R    R G  ++   +  +   +T+GRGGMVWVRN+NVQKWL+SRS AAPTR
Sbjct:  287 MQGSLDKVLESSQESLMRLKDLQALNYRYPRLVIVKEAGICGRSSKATGWKRFLPNKFRGVGKKDMALHFLCPVDMTKVPCGYGGEGYRFQETRDWVKKISPVLQVAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFRE--EMKRVTNGRGGMVWVRNDNVQKWLESRSTAAPTR 521
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 8.330e-94
Identity = 165/235 (70.21%), Postives = 187/235 (79.57%), Query Frame = 2 
Query:  491 SGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEACLTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            +GRLDKVLESTQESL RL +LQAPN   P   VVKEV S GT+SKA G KSMLSKLRG+GKKDM L FLCPVDMT VPCGYGGEGY+F+ETR+WVK++SP L+V VVTAKVALNA TG+NVDISDFLKDV DGLVEELVDRTLDE+ALLRAV GDD + ADL+RDTRASYEALK FM+  +  R    R G  ++   +  +   L DGRGG VWVRNENV+KWL S S  AP+R
Sbjct:  800 AGRLDKVLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLRGLGKKDMRLHFLCPVDMTTVPCGYGGEGYQFQETRAWVKRVSPALQVTVVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFRE--EMKRLPDGRGGEVWVRNENVRKWLASNSSPAPSR 1032
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: LRR-GTPase (of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.370e-90
Identity = 164/230 (71.30%), Postives = 188/230 (81.74%), Query Frame = 2 
Query:  509 VLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEAC-LTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            VLESTQESLMRL +LQAPN   P   VVKEV S GT+SKA G KSML+KLRG+ KKDMTL FLCPVDMT+VPCGYGGEG+RFK+TR WV+KISPVL+VAVVTAKVALNATTG+NVD SDFLKDV DGLV ELVDRTLDE AL R V G++ I AD++R TRASYEALKKFMDK +I+R    + G  ++H    +DE   + DG+GGMVWVRN+NVQKWL+SR  AAPTR
Sbjct:  867 VLESTQESLMRLKNLQAPNYLYPRLVVVKEVGSGGTSSKAHGKKSMLTKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHRFKQTRGWVRKISPVLQVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHF---RDEMKRVADGKGGMVWVRNKNVQKWLESR--AAPTR 1091
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 3.120e-87
Identity = 153/234 (65.38%), Postives = 183/234 (78.21%), Query Frame = 2 
Query:  494 GRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERV--GRPGW*WLHRLQGQDEACLTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            GRL+ V ++TQE LMRL +LQAPN   P    V+EV S  T S+A G K +LSKLRG+GKK+M L FLCPVDMTKVPCGYGGEGYRF+ETR WVKKISPVL+VAVVTAKVALNAT G+NV+IS+FLKDV DGL +ELVDR+LDE+ALLR V G++++ AD++ DTRASYEALKK MDK Q+ R+   R G  ++          + DGRGGMVWVRNENVQ+WLDS S  AP+R
Sbjct: 1014 GRLENVFKNTQEILMRLKNLQAPNYLYPRLVAVEEVASGSTPSRAHGMKRVLSKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKR--VPDGRGGMVWVRNENVQRWLDSHSNTAPSR 1245
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 1.300e-84
Identity = 146/241 (60.58%), Postives = 184/241 (76.35%), Query Frame = 2 
Query:  467 VKDELGMISGRLDKVLESTQESLMRLGDLQAPN*SLPAPFVVKEVESDGTASKARGTKSMLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPVLEVAVVTAKVALNATTGMNVDISDFLKDV*DGLVEELVDRTLDEEALLRAVLGDDNITADLRRDTRASYEALKKFMDKGQIERVGRPGW*WLHRLQGQDEACLTDGRGGMVWVRNENVQKWLDSRSIAAPTR 1189
            +KD    + GRL KVL+STQESLMRL  LQAPN   P    ++E+ S GT ++ARG K +LSKLRG+G K+MTL FLCPVDMTKVPCGY G+GYRF+ETR WVKK+SPVL+VA+VTAKVA+ AT+G++VD+SDFLKDV DGLV+ELVDR LDE+ L R V G++++  D+++ TRASYEAL + M K +  +  R G  ++   +      L+DGRGG VWVRNENVQKWLDS S AAP+R
Sbjct:  998 LKDGFDDLKGRLSKVLDSTQESLMRLQTLQAPNYPYPRLVAIEEIASGGTLTRARGMKRVLSKLRGVGTKEMTLHFLCPVDMTKVPCGYDGDGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRMLDEDELRRVVSGEEDVGTDMQKQTRASYEALTELMGKLERRKDARDGDGYVDFRENMQR--LSDGRGGEVWVRNENVQKWLDSHSSAAPSR 1236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1042.407.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LRR-GTPase8.190e-11583.75of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized3.450e-11465.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.820e-11273.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.510e-10875.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.110e-10276.19protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.070e-9770.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase8.330e-9470.21of the ROCO family, incomplete sequence n=1 Tax=Ec... [more]
LRR-GTPase1.370e-9071.30of the ROCO family, incomplete sequence n=1 Tax=Ec... [more]
LRR-GTPase3.120e-8765.38of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase1.300e-8460.58of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1042contigEcto-sp9_F_contig1042:6428..9915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.4e-34
Seed eggNOG ortholog2880.D8LJS7
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size1189
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1042.407.1prot_Ecto-sp9_F_contig1042.407.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1042 9117..9609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.9436083-UTR-Ecto-sp9_F_contig1042:6427..65661622928250.9436083-UTR-Ecto-sp9_F_contig1042:6427..6566Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 6428..6566 +
1692277809.409075-UTR-Ecto-sp9_F_contig1042:6427..65661692277809.409075-UTR-Ecto-sp9_F_contig1042:6427..6566Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 6428..6566 +
1622928250.9633808-UTR-Ecto-sp9_F_contig1042:7869..79421622928250.9633808-UTR-Ecto-sp9_F_contig1042:7869..7942Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 7870..7942 +
1692277809.420686-UTR-Ecto-sp9_F_contig1042:7869..79421692277809.420686-UTR-Ecto-sp9_F_contig1042:7869..7942Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 7870..7942 +
1622928250.9793212-UTR-Ecto-sp9_F_contig1042:8685..91161622928250.9793212-UTR-Ecto-sp9_F_contig1042:8685..9116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 8686..9116 +
1692277809.430433-UTR-Ecto-sp9_F_contig1042:8685..91161692277809.430433-UTR-Ecto-sp9_F_contig1042:8685..9116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 8686..9116 +
1622928251.0369222-UTR-Ecto-sp9_F_contig1042:9609..99151622928251.0369222-UTR-Ecto-sp9_F_contig1042:9609..9915Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 9610..9915 +
1692277809.4589903-UTR-Ecto-sp9_F_contig1042:9609..99151692277809.4589903-UTR-Ecto-sp9_F_contig1042:9609..9915Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 9610..9915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.994964-CDS-Ecto-sp9_F_contig1042:9116..92721622928250.994964-CDS-Ecto-sp9_F_contig1042:9116..9272Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 9117..9272 +
1692277809.4401913-CDS-Ecto-sp9_F_contig1042:9116..92721692277809.4401913-CDS-Ecto-sp9_F_contig1042:9116..9272Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 9117..9272 +
1622928251.0108812-CDS-Ecto-sp9_F_contig1042:9525..96091622928251.0108812-CDS-Ecto-sp9_F_contig1042:9525..9609Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 9526..9609 +
1692277809.449624-CDS-Ecto-sp9_F_contig1042:9525..96091692277809.449624-CDS-Ecto-sp9_F_contig1042:9525..9609Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 9526..9609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1042.407.1

>prot_Ecto-sp9_F_contig1042.407.1 ID=prot_Ecto-sp9_F_contig1042.407.1|Name=mRNA_Ecto-sp9_F_contig1042.407.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
MLSKLRGMGKKDMTLQFLCPVDMTKVPCGYGGEGYRFKETRSWVKKISPV
LEVAVVTAKVALNATTGMNVDISDFLKDV*
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mRNA from alignment at Ecto-sp9_F_contig1042:6428..9915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1042.407.1 ID=mRNA_Ecto-sp9_F_contig1042.407.1|Name=mRNA_Ecto-sp9_F_contig1042.407.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3488bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1042:6428..9915+ (Ectocarpus species9 EcSCA_722f female)
TGCATCCCACTTGTCAGGCGACTAGAGATGGAGACAAATTTCTGGAAGCG
AGAATGCCCACACTGCAGTGCCGATACCGGAGGGCTCGGGGCCGCAGCTA
TCGATCTCTTGCGTTTCGTGGACATCCGCCTGGACCGAGGTATGCACGAC
CAATGTCGAGTTTGGAGTACCGTACAAGTGCGAGTGAGCCCACACGTGTT
CGATTGGCGTTTCTTCATGGGTGCGATGTCTGCCACTTGTGCGATCGCCG
CCACCCGAACGGTAATTAGTTATCAATCGTTTGGTTTCGCTAGTTTCAGG
CACACCCTTGCGCGACAGCTCCGATTTATGACATATGTACTGAATAAGAT
CGCATCAGATGCCCGTGTTTTTGTTTCTATCCCCTGGAATATCCTCGCCC
TCTGTGATCTGAACAATCACAACGGGCGAACCTTTGATGTATAACTGTGT
ACTGCTGCAACAGACCTGCGAGCGTTCCCATATAGCAATCGAGCGCATGC
AATGCACACAACTTTGCACAGAACCGGTACAGCTCGGTAGAGATCGTTCT
ATGAGTGGCGACTAAATAGCATGGTAGACAGAGATTGTGCTTGTGGCGGT
GTGCGAAGAAGGAAGAACGACCGGCTCTCTGCTGAAGTTGATCAATTTCC
CTTCCGGCTTTATCTTTGCTGTCGGAAGGTTTTAGATCATCACGGAATGT
TTACTGTTTCATGTGTTTGGATGAGGGTTAGATATAAGTAAGAAACAGTT
CTTGTCGTTCTTGTCGTTCTACGTGTGCGCCGCCACGCTGCATACAGCTG
CGGGGCCCAACAACAAACTGTCAGAGAAAAACGTGAAGCAACTGGTTGCA
GCCCACGGGACCCACTCGCGATGTCACGAACCTCACGGCCGTTGGTCTTC
TGGTGGGGTTTTGTTGAAGTCTTTGCAATCCTGTGCTTCAACTCCCACCA
CTGCGTGAAACTGATAAGATATATATATTTTTCATACCCTTGTTTTTCCC
CAATCCTGTTCGATCGCTCCAACCTGTGCATTGATCCCTACGTGTTCGGC
AATGTGTGGCTATATGTATGTATGCTTTTGCCGAATTCAGCGTCAGTTGG
TTGTCCTCGTTGATCCGTGAGTCCAGCCATAGGTCTACTGATAGATTGTA
TGAGGAGTGTTGGAATGGGGGCAGGAGACTGTAGTTCTGTTGCGTTGTCT
GCACCCTGGCGGGGTCGCCCTTGAGGCTGATTCTCGTGCTCAAGACATCG
TTGTACGTAATGCAATGTAGGCCACACGGAGGAATGAACTCGATGGCTCC
GGCCCAGTCAAGTTTCGACCGTTGCCGTCACCTCTCGCGGGCTACCGATA
GGGGCATCCGCTTTGCGAACATCTCGTCGTGAGCAAGAGAGTCACTGTTA
GGGCATGCTGACCTACTTCTTCCCCTCAATTTTCCACGGCAGACGTGATT
TTCAACGAGGTGAAGGCGAGGTTCGACGACCTTGAGAGAGTCAGTACTCC
TTCACTTGCCCGACGGTGAGAACGAATTGCACGTCTCCGATTGTACATAA
AGAAGTGCGCAACCAATGAAATCGGAGTGATTTTGCCCCATCAACGTGTG
TTGCGGTATGATCCGATGGAGAAAACCCGACGTCAGTGTTTGGTTCTTCC
GTTGACAAGCTGTGCCCGTTGTGGACCAAAACGGACGAACCCGTTAGCAT
CGAGCTCTGGCCTGTTTCGGTGGCCTTTCGGCGATTCGGTTTTTCGTCAG
GTATTGGCATGATGTTACCGCTAGTTCGCGCGGCGATTCATTCGAATGTT
CTACAATGTTGATTCATCTCGAAGCCCACCCACCCGTCACCCTCACCGGT
CAATTGTCCGCTGACCCGCTTGGTCTGCGGCTTGTATGTTCGGTAGGTTG
GTCTTGTGTGGAGTAGAGAGAAAAATCGGAGGCAAGACCTTAATGTTGCC
GTGTTTCTTCGCTCCTCGCTTACCGCAAGTGTACGACACCATCACGTTCC
AATAGTATGGGTAGTAACGGCAGTACAACTTCACTTCTGTGACGTCTATC
ACTCTACCCTCGTTCGAAAAGGGTGCGCTGGAGGCATACGCTGACATTGC
CTCTTCCACATTGCAACCCCGTGGCCATCCTGCCTGGCTCATGGTGTCTC
GGCAACATCTGTGAACCGGGACTGCGGTTCTTTTTCGTCGGGGCGCGCAT
TTGTTTATCAAGCTATATGACGTCCTGTCTGGTCCTTGCGTCAAGTTTGT
ACGCACAGCATGATCACTCCAAGGAGGAGGGCGAGTTGATTCGAAAGATC
GACGGCGTGGCCACAGCTGTGCAGGGCGCGTTCAATGAGGTGAAGGTTGA
GGTGGAGGGAGGACTCAACGACGTCAAGGTTGGGATGAAGGCGGGATTTA
CCAAGGTGGAAGGAGGATTCACTAGCGGAAGGGCGAGATGAAGGAAGGAT
TCTACGAGACGAAAGTTGAGATGGAGGGAGGGTTCGGCGACACCAAGACC
AAGTTGTGTGACGTGAAGGATGAGTTAGGCATGATATCGGGAAGGCTGGA
CAAGGTGCTAGAGAGCACCCAGGAAAGCCTCATGCGCCTCGGGGACTTGC
AGGCCCCGAACTAATCGTTACCCGCGCCTTTTGTGGTCAAGGAGGTTGAA
TCTGATGGCACTGCGTCGAAGGCTCGTGGGACGAAGAGTATGCTGAGCAA
ACTTCGTGGCATGGGGAAGAAAGACATGACCCTGCAGTTCTTGTGCCCGG
TCGACATGACCAAGGTGCCGTGCGGCTATGGTGGCGAAGGCTATCGATTT
AAGGAGACGCGAAGCTGGGTGAAGAAAATATCTCCTGTGCTTGAGGTAAG
ACAACACTACCGTTCGGTAGGGGCACTATTTCACGCGTGGATTCACACTT
TATAGCCCATTATTTTTATGCTGTTGAGGGCACACTCCACACGACGAGCA
ATTCCTCCATGCAGTACGTGCTGCCGGCGTCAAGTCTTCGATTATCAAGG
CAGGCTGTGGTTCCTGGCGTAATCCTTTGAAATGTCAGTGATGGTGAACT
TTGGTGGAATGTTTGTTGTCCTCTTGGTCGTGCCCTCTCTCCCTTTAGGT
GGCCGTGGTGACCGCGAAGGTGGCGCTGAACGCAACGACAGGGATGAACG
TGGATATCTCGGATTTCCTCAAGGACGTTTGAGATGGGTTGGTCGAGGAG
CTAGTCGACCGCACTCTGGATGAGGAGGCGCTGCTTCGCGCTGTTTTGGG
TGACGACAACATCACCGCAGATTTGCGAAGGGATACGAGGGCCTCGTATG
AAGCGCTGAAGAAGTTTATGGACAAGGGACAAATTGAGAGGGTTGGGCGC
CCGGGATGGTGATGGCTGCATAGACTTCAGGGACAAGATGAAGCGTGTCT
CACCGACGGGAGGGGCGGCATGGTGTGGGTTCGGAACGAAAACGTTCAAA
AGTGGTTGGACTCGCGTTCGATTGCTGCTCCAACTCGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1042:6428..9915+

>mRNA_Ecto-sp9_F_contig1042.407.1 ID=mRNA_Ecto-sp9_F_contig1042.407.1|Name=mRNA_Ecto-sp9_F_contig1042.407.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1042:6428..9915+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGAGCAAACTTCGTGGCATGGGGAAGAAAGACATGACCCTGCAGTT
CTTGTGCCCGGTCGACATGACCAAGGTGCCGTGCGGCTATGGTGGCGAAG
GCTATCGATTTAAGGAGACGCGAAGCTGGGTGAAGAAAATATCTCCTGTG
CTTGAGATGCTGAGCAAACTTCGTGGCATGGGGAAGAAAGACATGACCCT
GCAGTTCTTGTGCCCGGTCGACATGACCAAGGTGCCGTGCGGCTATGGTG
GCGAAGGCTATCGATTTAAGGAGACGCGAAGCTGGGTGAAGAAAATATCT
CCTGTGCTTGAGGTGGCCGTGGTGACCGCGAAGGTGGCGCTGAACGCAAC
GACAGGGATGAACGTGGATATCTCGGATTTCCTCAAGGACGTTTGAGTGG
CCGTGGTGACCGCGAAGGTGGCGCTGAACGCAACGACAGGGATGAACGTG
GATATCTCGGATTTCCTCAAGGACGTTTGA
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