mRNA_Ecto-sp9_F_contig1042.406.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1042.406.1
Unique NamemRNA_Ecto-sp9_F_contig1042.406.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.200e-27
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CP CSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARF+DLE   + +        HD SKEE ELIRKIDG+ATAVQ
Sbjct:  931 CPQCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFNDLESQYSFTCP-----THDRSKEESELIRKIDGMATAVQ 1004
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.080e-26
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CPHCS DTGGLG AAIDL+R VDIRL+RDVIFN VKARFDDLE   + +L       HD SKEEGELIRKIDGVATAVQ
Sbjct:  445 CPHCSEDTGGLGEAAIDLVRLVDIRLNRDVIFNGVKARFDDLESQYSFTLP-----THDRSKEEGELIRKIDGVATAVQ 518
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BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.080e-24
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CP CS DTGGLGAAAIDL+RFVDIRLDRDVIFN+VKARFDDL+  S  SL+       D S+EEGELIRKID VATAV+
Sbjct:  618 CPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFNDVKARFDDLD--SQYSLS----CPTDPSQEEGELIRKIDDVATAVK 690
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.000e-23
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CP CS DTGGLGAAAIDL+RFVDIRLDRDVIF EVKARFDDL+  S  SL+       D S+EEGELIRKID VA AV+
Sbjct:  479 CPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFKEVKARFDDLD--SQYSLS----CPTDPSQEEGELIRKIDDVARAVR 551
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.070e-22
Identity = 54/80 (67.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLE-RVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CP CS DTGGLGAA +DL+  VDIRLDRDVIFNEVKARFDDL+ + S P          D S+EEGELIRKID VATAV+
Sbjct:   48 CPQCSVDTGGLGAATVDLVHIVDIRLDRDVIFNEVKARFDDLDSQYSFP-------CPTDPSQEEGELIRKIDDVATAVK 120
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.650e-18
Identity = 56/89 (62.92%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDR-------DVIFNEVKARFDDLER---VSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            CP CSADTGGLGAAAIDLLR VDIRLDR       DVIFNEVKARFDDLE     + P+         D  ++EGELIRKI  VATAV+
Sbjct:   99 CPKCSADTGGLGAAAIDLLRVVDIRLDRGVHDQCRDVIFNEVKARFDDLESQYCFACPA---------DTFRKEGELIRKI--VATAVK 176
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.140e-17
Identity = 52/79 (65.82%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLE-RVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAV 288
            CP CSADT GLGAAAIDL+R VDIRLDRD IF+EVK RF DLE R S  S A         SK E  LI+KIDGVA AV
Sbjct:  855 CPQCSADTRGLGAAAIDLVRMVDIRLDRDEIFHEVKERFVDLEGRYSFSSPA-------GSSKGENLLIQKIDGVAIAV 926
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.230e-16
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERV-STPSLA--------RRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            C  CS    G GAAAI LLR VDIRL+RDV+F+EVKARF + E + S P+L+        R +  + D S+E+GELIRK+D VATAV+
Sbjct:  386 CRQCSPKIRGQGAAAIKLLRMVDIRLERDVVFDEVKARFLECEHIFSRPTLSVAVLCLSSRHVCTKQDPSQEQGELIRKMDDVATAVE 473
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.800e-15
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   40 FWKRECPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLER--VSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            F +R+CP CS +T GLGAAAIDL+  VDIRLDRDVIF EVKARF  LE    S P+           SK E EL+RKI+ +A A++
Sbjct:  991 FLERKCPRCSPETRGLGAAAIDLVCLVDIRLDRDVIFREVKARFVVLESQYFSCPT---------GSSKTEDELLRKIEDMAIAMK 1067
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.080e-13
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   55 CPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDDLERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ 291
            C  CS DT GLGAAAIDL+R VDIRLDRDVIF EVKARF DLE   + S      +    S +EG L++K++ VA  ++
Sbjct:  927 CRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFREVKARFVDLEGQYSFS------SSTASSNDEGVLVQKMEEVARTLK 999
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1042.406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
LRR-GTPase6.200e-2775.95of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized2.080e-2674.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.080e-2473.42protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.000e-2372.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.070e-2267.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.650e-1862.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase6.140e-1765.82of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized7.230e-1653.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase4.800e-1554.65of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase1.080e-1354.43of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1042contigEcto-sp9_F_contig1042:6428..8751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4.6e-23
Seed eggNOG ortholog2880.D8LJS7
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1042.406.1prot_Ecto-sp9_F_contig1042.406.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1042 6455..8751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.8453078-UTR-Ecto-sp9_F_contig1042:6427..64541622928250.8453078-UTR-Ecto-sp9_F_contig1042:6427..6454Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 6428..6454 +
1692277809.368646-UTR-Ecto-sp9_F_contig1042:6427..64541692277809.368646-UTR-Ecto-sp9_F_contig1042:6427..6454Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1042 6428..6454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.8594763-CDS-Ecto-sp9_F_contig1042:6454..65661622928250.8594763-CDS-Ecto-sp9_F_contig1042:6454..6566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 6455..6566 +
1692277809.3798156-CDS-Ecto-sp9_F_contig1042:6454..65661692277809.3798156-CDS-Ecto-sp9_F_contig1042:6454..6566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 6455..6566 +
1622928250.8759737-CDS-Ecto-sp9_F_contig1042:7869..79421622928250.8759737-CDS-Ecto-sp9_F_contig1042:7869..7942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 7870..7942 +
1692277809.388915-CDS-Ecto-sp9_F_contig1042:7869..79421692277809.388915-CDS-Ecto-sp9_F_contig1042:7869..7942Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 7870..7942 +
1622928250.890713-CDS-Ecto-sp9_F_contig1042:8672..87511622928250.890713-CDS-Ecto-sp9_F_contig1042:8672..8751Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 8673..8751 +
1692277809.3983278-CDS-Ecto-sp9_F_contig1042:8672..87511692277809.3983278-CDS-Ecto-sp9_F_contig1042:8672..8751Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1042 8673..8751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1042.406.1

>prot_Ecto-sp9_F_contig1042.406.1 ID=prot_Ecto-sp9_F_contig1042.406.1|Name=mRNA_Ecto-sp9_F_contig1042.406.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
METNFWKRECPHCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFDD
LERVSTPSLARRLYAQHDHSKEEGELIRKIDGVATAVQ
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mRNA from alignment at Ecto-sp9_F_contig1042:6428..8751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1042.406.1 ID=mRNA_Ecto-sp9_F_contig1042.406.1|Name=mRNA_Ecto-sp9_F_contig1042.406.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2324bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1042:6428..8751+ (Ectocarpus species9 EcSCA_722f female)
TGCATCCCACTTGTCAGGCGACTAGAGATGGAGACAAATTTCTGGAAGCG
AGAATGCCCACACTGCAGTGCCGATACCGGAGGGCTCGGGGCCGCAGCTA
TCGATCTCTTGCGTTTCGTGGACATCCGCCTGGACCGAGGTATGCACGAC
CAATGTCGAGTTTGGAGTACCGTACAAGTGCGAGTGAGCCCACACGTGTT
CGATTGGCGTTTCTTCATGGGTGCGATGTCTGCCACTTGTGCGATCGCCG
CCACCCGAACGGTAATTAGTTATCAATCGTTTGGTTTCGCTAGTTTCAGG
CACACCCTTGCGCGACAGCTCCGATTTATGACATATGTACTGAATAAGAT
CGCATCAGATGCCCGTGTTTTTGTTTCTATCCCCTGGAATATCCTCGCCC
TCTGTGATCTGAACAATCACAACGGGCGAACCTTTGATGTATAACTGTGT
ACTGCTGCAACAGACCTGCGAGCGTTCCCATATAGCAATCGAGCGCATGC
AATGCACACAACTTTGCACAGAACCGGTACAGCTCGGTAGAGATCGTTCT
ATGAGTGGCGACTAAATAGCATGGTAGACAGAGATTGTGCTTGTGGCGGT
GTGCGAAGAAGGAAGAACGACCGGCTCTCTGCTGAAGTTGATCAATTTCC
CTTCCGGCTTTATCTTTGCTGTCGGAAGGTTTTAGATCATCACGGAATGT
TTACTGTTTCATGTGTTTGGATGAGGGTTAGATATAAGTAAGAAACAGTT
CTTGTCGTTCTTGTCGTTCTACGTGTGCGCCGCCACGCTGCATACAGCTG
CGGGGCCCAACAACAAACTGTCAGAGAAAAACGTGAAGCAACTGGTTGCA
GCCCACGGGACCCACTCGCGATGTCACGAACCTCACGGCCGTTGGTCTTC
TGGTGGGGTTTTGTTGAAGTCTTTGCAATCCTGTGCTTCAACTCCCACCA
CTGCGTGAAACTGATAAGATATATATATTTTTCATACCCTTGTTTTTCCC
CAATCCTGTTCGATCGCTCCAACCTGTGCATTGATCCCTACGTGTTCGGC
AATGTGTGGCTATATGTATGTATGCTTTTGCCGAATTCAGCGTCAGTTGG
TTGTCCTCGTTGATCCGTGAGTCCAGCCATAGGTCTACTGATAGATTGTA
TGAGGAGTGTTGGAATGGGGGCAGGAGACTGTAGTTCTGTTGCGTTGTCT
GCACCCTGGCGGGGTCGCCCTTGAGGCTGATTCTCGTGCTCAAGACATCG
TTGTACGTAATGCAATGTAGGCCACACGGAGGAATGAACTCGATGGCTCC
GGCCCAGTCAAGTTTCGACCGTTGCCGTCACCTCTCGCGGGCTACCGATA
GGGGCATCCGCTTTGCGAACATCTCGTCGTGAGCAAGAGAGTCACTGTTA
GGGCATGCTGACCTACTTCTTCCCCTCAATTTTCCACGGCAGACGTGATT
TTCAACGAGGTGAAGGCGAGGTTCGACGACCTTGAGAGAGTCAGTACTCC
TTCACTTGCCCGACGGTGAGAACGAATTGCACGTCTCCGATTGTACATAA
AGAAGTGCGCAACCAATGAAATCGGAGTGATTTTGCCCCATCAACGTGTG
TTGCGGTATGATCCGATGGAGAAAACCCGACGTCAGTGTTTGGTTCTTCC
GTTGACAAGCTGTGCCCGTTGTGGACCAAAACGGACGAACCCGTTAGCAT
CGAGCTCTGGCCTGTTTCGGTGGCCTTTCGGCGATTCGGTTTTTCGTCAG
GTATTGGCATGATGTTACCGCTAGTTCGCGCGGCGATTCATTCGAATGTT
CTACAATGTTGATTCATCTCGAAGCCCACCCACCCGTCACCCTCACCGGT
CAATTGTCCGCTGACCCGCTTGGTCTGCGGCTTGTATGTTCGGTAGGTTG
GTCTTGTGTGGAGTAGAGAGAAAAATCGGAGGCAAGACCTTAATGTTGCC
GTGTTTCTTCGCTCCTCGCTTACCGCAAGTGTACGACACCATCACGTTCC
AATAGTATGGGTAGTAACGGCAGTACAACTTCACTTCTGTGACGTCTATC
ACTCTACCCTCGTTCGAAAAGGGTGCGCTGGAGGCATACGCTGACATTGC
CTCTTCCACATTGCAACCCCGTGGCCATCCTGCCTGGCTCATGGTGTCTC
GGCAACATCTGTGAACCGGGACTGCGGTTCTTTTTCGTCGGGGCGCGCAT
TTGTTTATCAAGCTATATGACGTCCTGTCTGGTCCTTGCGTCAAGTTTGT
ACGCACAGCATGATCACTCCAAGGAGGAGGGCGAGTTGATTCGAAAGATC
GACGGCGTGGCCACAGCTGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1042:6428..8751+

>mRNA_Ecto-sp9_F_contig1042.406.1 ID=mRNA_Ecto-sp9_F_contig1042.406.1|Name=mRNA_Ecto-sp9_F_contig1042.406.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1042:6428..8751+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGACAAATTTCTGGAAGCGAGAATGCCCACACTGCAGTGCCGATAC
CGGAGGGCTCGGGGCCGCAGCTATCGATCTCTTGCGTTTCGTGGACATCC
GCCTGGACCGAGATGGAGACAAATTTCTGGAAGCGAGAATGCCCACACTG
CAGTGCCGATACCGGAGGGCTCGGGGCCGCAGCTATCGATCTCTTGCGTT
TCGTGGACATCCGCCTGGACCGAGACGTGATTTTCAACGAGGTGAAGGCG
AGGTTCGACGACCTTGAGAGAGTCAGTACTCCTTCACTTGCCCGACGACG
TGATTTTCAACGAGGTGAAGGCGAGGTTCGACGACCTTGAGAGAGTCAGT
ACTCCTTCACTTGCCCGACGTTTGTACGCACAGCATGATCACTCCAAGGA
GGAGGGCGAGTTGATTCGAAAGATCGACGGCGTGGCCACAGCTGTGCAGT
TTGTACGCACAGCATGATCACTCCAAGGAGGAGGGCGAGTTGATTCGAAA
GATCGACGGCGTGGCCACAGCTGTGCAG
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