mRNA_Ecto-sp9_F_contig10418.404.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10418.404.1
Unique NamemRNA_Ecto-sp9_F_contig10418.404.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10418.404.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 6.100e-34
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 GYTRRDGGIRPDGEIAR*RHQRRRGHGGRVGNGIPMLSGRYGGEAGLPSPGAVGAVVEARGLSRGLAGVFQRTYA 225
            GYTRRDGGIRPD EIAR R QRRRGHGGR G+G+P+L GR GGEAGL SPGAVGAVVEARGLSRG AGVF RTYA
Sbjct:   11 GYTRRDGGIRPDSEIARRRQQRRRGHGGRAGDGVPVLPGRDGGEAGLSSPGAVGAVVEARGLSRGPAGVFHRTYA 85
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BLAST of mRNA_Ecto-sp9_F_contig10418.404.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.970e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 2 
Query:   77 MAEGLATAFQCFQDGMGEKLVSLAQEQSALLSKLEASREALPVSSNGRTR 226
            MAEGLATAFQCFQDGMGEKL+SLAQ+QSALLSKLEASREALPVSS GRTR
Sbjct:    1 MAEGLATAFQCFQDGMGEKLISLAQQQSALLSKLEASREALPVSSTGRTR 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10418.404.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.100e-3484.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.970e-2194.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10418contigEcto-sp9_F_contig10418:2766..3705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001190.2
Exons2
Model size228
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10418.404.1prot_Ecto-sp9_F_contig10418.404.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10418 2782..3705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.487596-UTR-Ecto-sp9_F_contig10418:2765..27811622928250.487596-UTR-Ecto-sp9_F_contig10418:2765..2781Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10418 2766..2781 +
1692277809.214217-UTR-Ecto-sp9_F_contig10418:2765..27811692277809.214217-UTR-Ecto-sp9_F_contig10418:2765..2781Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10418 2766..2781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928250.5144238-CDS-Ecto-sp9_F_contig10418:2781..29581622928250.5144238-CDS-Ecto-sp9_F_contig10418:2781..2958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10418 2782..2958 +
1692277809.2272532-CDS-Ecto-sp9_F_contig10418:2781..29581692277809.2272532-CDS-Ecto-sp9_F_contig10418:2781..2958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10418 2782..2958 +
1622928250.5327582-CDS-Ecto-sp9_F_contig10418:3672..37051622928250.5327582-CDS-Ecto-sp9_F_contig10418:3672..3705Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10418 3673..3705 +
1692277809.236893-CDS-Ecto-sp9_F_contig10418:3672..37051692277809.236893-CDS-Ecto-sp9_F_contig10418:3672..3705Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10418 3673..3705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10418.404.1

>prot_Ecto-sp9_F_contig10418.404.1 ID=prot_Ecto-sp9_F_contig10418.404.1|Name=mRNA_Ecto-sp9_F_contig10418.404.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
MAEFARTARLQGDDISGEEAMAEGLATAFQCFQDGMGEKLVSLAQEQSAL
LSKLEASREALPVSSNGRTR
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mRNA from alignment at Ecto-sp9_F_contig10418:2766..3705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10418.404.1 ID=mRNA_Ecto-sp9_F_contig10418.404.1|Name=mRNA_Ecto-sp9_F_contig10418.404.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=940bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10418:2766..3705+ (Ectocarpus species9 EcSCA_722f female)
GGATACACACGGCGGGATGGCGGAATTCGCCCGGACGGCGAGATTGCAAG
GTGACGACATCAGCGGAGAAGAGGCCATGGCGGAAGGGTTGGCAACGGCA
TTCCAATGCTTTCAGGACGGTATGGGGGAGAAGCTGGTCTCCCTAGCCCA
GGAGCAGTCGGCGCTGTTGTCGAAGCTCGAGGCCTCTCGAGAGGTGAAGG
GTCTTCTTGAATGTGTCTTGTGAACAGTGCCGAAGAGAGGGGATACAGGG
ACAGATACCGTAAGAGGCGGAGAGATAGCACCCCCAATACGCGGACTTTG
AAAAATCGATTGCTCCACAACAAAGTGGGTGCCGAAAGAGACCGATACGT
GTACGGAGAGCCCTCGACGAGAAGCTTCAAGAACAGCCATTGTTGGTGTT
CGCACAAGCAAGCTTGGTTGTGGAGCAGTCGAGGTTTGAAAATCGGTCTC
GGGGGGGTGCCATCTCTCCGCCTCTTACGGGATACCACGGTACGGTATAC
GGTACGGTACAGACAAGCTTGGTTGTGGAGCAATCGAGGTTTGAAAATCA
GTCTAGGGGGGGTGCCATCTCTCCGCCTCTTACGGAATACCACGGCACGG
TATTCGGTACGGTACAGGCAATCTTGGTTGTGGAGCTAGCTCGCGACCGC
TGTCTCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTCCTCCCCCCACCNNNNNNNCCTCGCGGTTTCCCCCGTTGG
TCCGGTGCTTTCCAGGGCGTCCTGGTTTTGGGCTCTCCCCGGTCCCCTGC
GTCCCCCCCCCCCCCCCCCCCCCCCCTCCTGTCGCTCTCTCACTCTCTCT
CTCTCTCTCTCCGGTCTTGATTGGCACCTTTCAACGTGACTGATTGTGAA
ACGACAGGCCTTGCCGGTGTCTTCCAACGGACGTACGCGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10418:2766..3705+

>mRNA_Ecto-sp9_F_contig10418.404.1 ID=mRNA_Ecto-sp9_F_contig10418.404.1|Name=mRNA_Ecto-sp9_F_contig10418.404.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10418:2766..3705+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGAATTCGCCCGGACGGCGAGATTGCAAGGTGACGACATCAGCGG
AGAAGAGGCCATGGCGGAAGGGTTGGCAACGGCATTCCAATGCTTTCAGG
ACGGTATGGGGGAGAAGCTGGTCTCCCTAGCCCAGGAGCAGTCGGCGCTG
TTGTCGAAGCTCGAGGCCTCTCGAGAGATGGCGGAATTCGCCCGGACGGC
GAGATTGCAAGGTGACGACATCAGCGGAGAAGAGGCCATGGCGGAAGGGT
TGGCAACGGCATTCCAATGCTTTCAGGACGGTATGGGGGAGAAGCTGGTC
TCCCTAGCCCAGGAGCAGTCGGCGCTGTTGTCGAAGCTCGAGGCCTCTCG
AGAGGCCTTGCCGGTGTCTTCCAACGGACGTACGCGAGCCTTGCCGGTGT
CTTCCAACGGACGTACGCGA
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