mRNA_Ecto-sp9_F_contig10407.399.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10407.399.1
Unique NamemRNA_Ecto-sp9_F_contig10407.399.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10407.399.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L858_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.640e-22
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = -3 
Query:  185 GSGMAPHHHGSNSSRRRPDQDLSPQGDNTGDAGAGAASSAMHARQQYGKAFSDHQGMRFLP 367
            G G+APH      SRRRPDQDLSPQGDNTGDAGAGAASSAMHARQQYGKAFSDHQG RFLP
Sbjct:  101 GIGIAPHXXXXXXSRRRPDQDLSPQGDNTGDAGAGAASSAMHARQQYGKAFSDHQGKRFLP 161
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BLAST of mRNA_Ecto-sp9_F_contig10407.399.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 9.280e-15
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = -3 
Query:  185 PDQDLSPQGD--NTGDAGAGAASSAMHARQQYGKAFSDHQGMRFLP 316
            PDQDL PQG+  NTGDAGAGAASSAMHARQ YGKAFSDHQGMRFLP
Sbjct:  617 PDQDLPPQGEGHNTGDAGAGAASSAMHARQHYGKAFSDHQGMRFLP 662
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10407.399.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.640e-2285.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.280e-1589.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10407contigEcto-sp9_F_contig10407:3108..3483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928249.7272382-CDS-Ecto-sp9_F_contig10407:3107..34821622928249.7272382-CDS-Ecto-sp9_F_contig10407:3107..3482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10407 3108..3482 +
1692277808.9295025-CDS-Ecto-sp9_F_contig10407:3107..34821692277808.9295025-CDS-Ecto-sp9_F_contig10407:3107..3482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10407 3108..3482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10407.399.1prot_Ecto-sp9_F_contig10407.399.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10407 3108..3482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10407.399.1

>prot_Ecto-sp9_F_contig10407.399.1 ID=prot_Ecto-sp9_F_contig10407.399.1|Name=mRNA_Ecto-sp9_F_contig10407.399.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
SICSPPGPTYQCCRRRCRRQRCHHRCRPRRAISQRQRRRRPRCFRRALRT
ITLPLRRRRRGEARSASPGDRKTPCHTAAARASLRRRRRHRRLRCCPPAG
TSLGLVGDGCCCCRGGGGPSRSRSR
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mRNA from alignment at Ecto-sp9_F_contig10407:3108..3483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10407.399.1 ID=mRNA_Ecto-sp9_F_contig10407.399.1|Name=mRNA_Ecto-sp9_F_contig10407.399.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=376bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10407:3108..3483+ (Ectocarpus species9 EcSCA_722f female)
TCCATCTGCTCACCCCCGGGTCCGACCTATCAGTGCTGCCGCCGCCGCTG
CCGCCGCCAGCGTTGTCATCATCGGTGTCGTCCCCGCCGCGCCATCTCGC
AGCGGCAGCGGCGGCGGCGGCCTCGCTGTTTCCGTAGAGCTCTTCGGACG
ATAACCTTACCCCTCCGCCGCCGCCGGAGGGGGGAGGCAAGAAGCGCATC
CCCTGGTGATCGGAAAACGCCTTGCCATACTGCTGCCGCGCGTGCATCGC
TGAGGAGGCGGCGCCGGCACCGGCGTCTCCGGTGTTGTCCCCCTGCGGGG
ACAAGTCTTGGTCTGGTCGGCGACGGCTGCTGTTGCTGCCGTGGTGGTGG
GGGGCCATCCCGCTCCCGCTCCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10407:3108..3483+

>mRNA_Ecto-sp9_F_contig10407.399.1 ID=mRNA_Ecto-sp9_F_contig10407.399.1|Name=mRNA_Ecto-sp9_F_contig10407.399.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10407:3108..3483+ (Ectocarpus species9 EcSCA_722f female)
TCCATCTGCTCACCCCCGGGTCCGACCTATCAGTGCTGCCGCCGCCGCTG
CCGCCGCCAGCGTTGTCATCATCGGTGTCGTCCCCGCCGCGCCATCTCGC
AGCGGCAGCGGCGGCGGCGGCCTCGCTGTTTCCGTAGAGCTCTTCGGACG
ATAACCTTACCCCTCCGCCGCCGCCGGAGGGGGGAGGCAAGAAGCGCATC
CCCTGGTGATCGGAAAACGCCTTGCCATACTGCTGCCGCGCGTGCATCGC
TGAGGAGGCGGCGCCGGCACCGGCGTCTCCGGTGTTGTCCCCCTGCGGGG
ACAAGTCTTGGTCTGGTCGGCGACGGCTGCTGTTGCTGCCGTGGTGGTGG
GGGGCCATCCCGCTCCCGCTCCCGATCCATCTGCTCACCCCCGGGTCCGA
CCTATCAGTGCTGCCGCCGCCGCTGCCGCCGCCAGCGTTGTCATCATCGG
TGTCGTCCCCGCCGCGCCATCTCGCAGCGGCAGCGGCGGCGGCGGCCTCG
CTGTTTCCGTAGAGCTCTTCGGACGATAACCTTACCCCTCCGCCGCCGCC
GGAGGGGGGAGGCAAGAAGCGCATCCCCTGGTGATCGGAAAACGCCTTGC
CATACTGCTGCCGCGCGTGCATCGCTGAGGAGGCGGCGCCGGCACCGGCG
TCTCCGGTGTTGTCCCCCTGCGGGGACAAGTCTTGGTCTGGTCGGCGACG
GCTGCTGTTGCTGCCGTGGTGGTGGGGGGCCATCCCGCTCCCGCTCCCGA
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