mRNA_Ecto-sp9_F_contig10400.394.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE9_ECTSI) HSP 1 Score: 334 bits (857), Expect = 4.620e-112 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1
Query: 1 MPTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
MPTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF
Sbjct: 1 MPTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 165
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Endoplasmic (reticulum-golgi intermediate compartment-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ98_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.150e-76 Identity = 112/162 (69.14%), Postives = 141/162 (87.04%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
I+TFDFYRKIP+DLTETT+QGA+MS A+ M +LF+CEL+AFL PE+Y+TV +D+N+DSKLRINFN+TMLALPC+YA++DVLD+LGTN+VN+T+NI+KWHTDE G K EFHGRN+ QE V+HD HHRDLDLAHEDGEHA+P+ + F +FI GN V+ DF
Sbjct: 5 IRTFDFYRKIPMDLTETTVQGAIMSAVAMLFMFVLFICELQAFLRPEIYSTVMLDTNRDSKLRINFNVTMLALPCEYATIDVLDVLGTNRVNITKNIIKWHTDERGRKVEFHGRNREQEDVQHDTHHRDLDLAHEDGEHALPIEEAAFPEFIAGNAYVIADF 166
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUZ1_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.210e-48 Identity = 84/163 (51.53%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPL-TSSNFKDFIQGNDNVMVDF 495
+K DFYRKIP D + T GA +S CA MLILF EL AFL T+V +D+N D++LRINFNITM+ L CD+ SVDV D+LGTN NMT+NI KW DENGVKR F GRNK + + HD+HH D++ H++G HA+ + +F+DF++ + V+F
Sbjct: 7 LKVLDFYRKIPEDFQKQTAVGASLSICAGLFMLILFFVELWAFLATTTDTSVILDTNSDTQLRINFNITMMDLACDFVSVDVYDVLGTNTQNMTKNIEKWQLDENGVKRIFQGRNKEVKEISHDEHHPDIETLHKNGVHAIAIGEDGSFEDFLESHKFSFVNF 169
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS36_9STRA) HSP 1 Score: 168 bits (425), Expect = 5.080e-47 Identity = 81/162 (50.00%), Postives = 114/162 (70.37%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
+KT DF+RKIP DLTE T GA +S CA ML+LFL EL AF++ + T V +D+N ++ LRINFNITM+ L CD+A+VDV+D+LGTN +N+T+N+ KW DENG + F GRN+ Q + HD HH +L+ H++G HA+ + ++F F+ N V V+F
Sbjct: 5 MKTVDFFRKIPTDLTEATALGAALSVCAGLFMLVLFLVELWAFMSTTIETGVMLDTNAETLLRINFNITMMELQCDFAAVDVVDILGTNSMNVTKNVEKWQLDENGKRMIFQGRNREQRDIAHDSHHPELEELHKNGIHAIQIAEADFDQFLSENPYVFVNF 166
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFU5_FISSO) HSP 1 Score: 167 bits (422), Expect = 1.680e-46 Identity = 81/162 (50.00%), Postives = 108/162 (66.67%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAH-EDGEHAVPLTSSNFKDFIQGNDNVMVD 492
+ + DFYR++P DLTE T+ GA MS CA+ M +LF E AF T E TT+A+D N ++R+NFNITML L CDY SVDV D LGTN+ N+T+N+ KW DE G +R F GRN+ +KHD+H + L+ H E+G HA+ LT NFK F++ N +D
Sbjct: 14 LSSVDFYRRVPKDLTEATILGAFMSACAMIVMAVLFFSETLAFATTETVTTIAVDENTSPQIRLNFNITMLDLHCDYVSVDVWDALGTNRQNVTKNVDKWQLDEEGKRRIFSGRNREARELKHDEHDKTLEEMHAEEGVHAIALTKENFKPFLEENPMAFID 175
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV72_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.950e-45 Identity = 84/163 (51.53%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPL-TSSNFKDFIQGNDNVMVDF 495
+K DFYRKIP D + T GA +S CA MLILF EL AFL T+V +D+N D++LRINFNITM+ L CD+ SVDV D+LGTN NMT+NI KW DENGVKR F GRNK + + HD+HH D++ H++G HA+ + +F+DF++ + V+F
Sbjct: 7 LKVLDFYRKIPEDFQKQTAVGASLSICAGLFMLILFFVELWAFLATTTDTSVILDTNSDTQLRINFNITMMDLACDFVSVDVYDVLGTNTQNMTKNIEKWQLDENGVKRIFQGRNKEVKEISHDEHHPDIETLHKNGVHAIAIGEDGSFEDFLESHKFSFVNF 169
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQU9_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.780e-44 Identity = 78/162 (48.15%), Postives = 108/162 (66.67%), Query Frame = 1
Query: 10 IKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
+++ DFYR++P DLTE T GA+MS L M ILF E AFLT V T++++D N ++++R+NFN+TML L CDY SVDVLD LGTN+ N+T+N+ KW D GV+R F GRN+ V H++H LD H +G HAVPLT+ F++ + +DF
Sbjct: 18 LQSVDFYRRVPKDLTEATSLGAMMSIICLSTMAILFFSETYAFLTTNVVTSISLDDNPEAQVRLNFNVTMLDLHCDYVSVDVLDALGTNRQNITKNVEKWQLDSEGVRRIFSGRNREMRAVSHEEHAESLDDLHANGVHAVPLTAETIDKFLEISKTAFIDF 179
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRX9_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.950e-44 Identity = 79/166 (47.59%), Postives = 116/166 (69.88%), Query Frame = 1
Query: 1 MPTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRD-LDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
M +K DF+RKIP DLTETT+ GA +S A M +LF+ EL AFL+ V T V +D+N D+ LRINFN+TML L CDYA+VDV+D+LGTN +N+T+N+ KW DE+G + F GRN+ Q+ + +++HH + ++ +G HAVPLT F++++Q + ++F
Sbjct: 1 MSGLKMMDFFRKIPADLTETTITGAALSVAACIFMGVLFIVELYAFLSTTVETGVMLDTNSDTLLRINFNVTMLDLQCDYAAVDVVDVLGTNSMNVTKNVEKWQLDEHGKRMIFQGRNREQKAISYEEHHPETVEEMMANGIHAVPLTEGGFEEYVQSHPYAFINF 166
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F3_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.030e-42 Identity = 74/164 (45.12%), Postives = 114/164 (69.51%), Query Frame = 1
Query: 4 PTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
P+ + D YR++P DLTET+ G ++S A M+ LF+ EL +F++ T V +D + D ++INFN+TML LPC YA VDVLD+LGTN++N+++NI KW+ DE G +R F GRN+ + + HD+HH L++ ++GEHAVPLT+ +F ++++ N+ V F
Sbjct: 6 PSARGMDLYRRVPADLTETSTLGGLLSIVAGVFMVALFIVELISFMSHRTETMVVLDQSHDQLIQINFNVTMLDLPCRYAVVDVLDVLGTNRMNVSKNIEKWNLDEAGRRRYFQGRNREERSILHDEHHGALEVLLQNGEHAVPLTADSFDEYLESNEFTFVSF 169
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKA3_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.330e-42 Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 1
Query: 13 KTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDHHRDLDLAHEDGEHAVPLTSSNFKDFIQGNDNVMVDF 495
K DFYRKIP D + T GA +S CA ML+LF EL AFL+ T+V +D+N D++LRINFNIT++ L CDYA VDV D+LGTN N+++NI KW DE GV+R F GRN+ Q+ + HD HH ++ H +G HA+PL +F +F++ + V+F
Sbjct: 7 KVLDFYRKIPEDFVKQTSVGASLSLCAGIFMLVLFFIELFAFLSTSTETSVILDTNADTQLRINFNITLMDLHCDYAVVDVYDVLGTNTQNISKNIEKWQLDERGVRRIFSGRNREQKDIAHDTHHPSIEELHMNGVHAIPLDDESFDEFLKEHRFSFVNF 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10400.394.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10400.394.1 >prot_Ecto-sp9_F_contig10400.394.1 ID=prot_Ecto-sp9_F_contig10400.394.1|Name=mRNA_Ecto-sp9_F_contig10400.394.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=165bp MPTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEback to top mRNA from alignment at Ecto-sp9_F_contig10400:44..3070- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10400.394.1 ID=mRNA_Ecto-sp9_F_contig10400.394.1|Name=mRNA_Ecto-sp9_F_contig10400.394.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3027bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10400:44..3070- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10400:44..3070- >mRNA_Ecto-sp9_F_contig10400.394.1 ID=mRNA_Ecto-sp9_F_contig10400.394.1|Name=mRNA_Ecto-sp9_F_contig10400.394.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10400:44..3070- (Ectocarpus species9 EcSCA_722f female)back to top |