mRNA_Ecto-sp9_F_contig10398.384.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI) HSP 1 Score: 189 bits (481), Expect = 6.240e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query: 40 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.430e-59 Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 1 SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
++ +QVKWLAR MS+LDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 2254 TVDSSQVKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.790e-34 Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query: 13 AQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
+QV L +S+LD RR FL FVTG+PRLP+GGF AL+PRLTVV+K+ PD HLPSCSTCQVYLKLPAYT +A L AKL AI EG++HFALD
Sbjct: 243 SQVAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA) HSP 1 Score: 121 bits (303), Expect = 9.760e-30 Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 16 QVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
Q++ L +S+LD RR F++F+TG+PRLP+GGFG LRPRLTVV+K V PD LPSCSTCQVYLKLP Y+SR L+ +L A+ EGQ HFALD
Sbjct: 2699 QIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.300e-24 Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
V+ L +SDLD RRQFL F TG+PRLP+GGF AL PRLT+V+K+ LPG +PD+ LPS STC YLKLP YTS+ + +L AIT+G F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKP--LPGRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH) HSP 1 Score: 99.4 bits (246), Expect = 3.900e-24 Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 13 AQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVK------KEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
A V+ L + + RR F+RF+TG PRLP GGFGAL+P LT+V+ +E D L LP+CSTC VYLKLPAY+S+ L AKL AI EGQ+ FA D
Sbjct: 77 APVRALLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEADAL--------LPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.150e-23 Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 16 QVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
QV+ L MS+ T+ RR FLRFVTG PRLP+GGF +LRP LT+VK PG D +P+C C VYLKLPAYT L KL AI +GQ+ F +D
Sbjct: 2811 QVQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEMD 2908
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZF83_9ASCO) HSP 1 Score: 102 bits (254), Expect = 3.930e-23 Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
S +K L +SD RRQFL+F+TG+PRLPIGGF AL P+LT+VKK VD G D HLPS TC YLK+P Y+ R ++AK+ A+ EG D F L
Sbjct: 1294 SFNSTAIKHLLSIISDFSKVERRQFLQFLTGSPRLPIGGFAALNPKLTIVKKHVD--SGQKTDDHLPSVMTCANYLKMPDYSLRDIMKAKILQAMREGSDSFHL 1395
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GCM7_9BILA) HSP 1 Score: 102 bits (253), Expect = 5.450e-23 Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
VKWL M D D + RR FL+FVTG+PRLP+GGF L P LTVV+K V+ PD++LPS TC YLKLP YTS+ ++ KL AI +GQ F L
Sbjct: 2285 VKWLFEIMIDFDIDERRAFLQFVTGSPRLPVGGFRTLHPPLTVVRKTVE---NDNPDNYLPSVMTCVNYLKLPDYTSKDIMKTKLLTAIRDGQFAFLL 2379
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DF45_SCHJA) HSP 1 Score: 97.8 bits (242), Expect = 6.220e-23 Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
+++L MS+ E RR F++FVTG+PRLP+GGF AL+P L +V K G D+HLPS TCQ YLKLP Y+S+A + +KL +AI EGQ+ F L
Sbjct: 140 IRFLFEIMSEFTAEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKRET---GENADNHLPSVMTCQNYLKLPDYSSKALMLSKLLYAINEGQNAFHL 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10398.384.1 >prot_Ecto-sp9_F_contig10398.384.1 ID=prot_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVback to top mRNA from alignment at Ecto-sp9_F_contig10398:3347..4462- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10398.384.1 ID=mRNA_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10398:3347..4462- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10398:3347..4462- >mRNA_Ecto-sp9_F_contig10398.384.1 ID=mRNA_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10398:3347..4462- (Ectocarpus species9 EcSCA_722f female)back to top |