mRNA_Ecto-sp9_F_contig10398.384.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10398.384.1
Unique NamemRNA_Ecto-sp9_F_contig10398.384.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.240e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query:   40 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.430e-59
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            ++  +QVKWLAR MS+LDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD
Sbjct: 2254 TVDSSQVKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.790e-34
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   13 AQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            +QV  L   +S+LD   RR FL FVTG+PRLP+GGF AL+PRLTVV+K+        PD HLPSCSTCQVYLKLPAYT +A L AKL  AI EG++HFALD
Sbjct:  243 SQVAALVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRKDTP-----RPDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 9.760e-30
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   16 QVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            Q++ L   +S+LD   RR F++F+TG+PRLP+GGFG LRPRLTVV+K V       PD  LPSCSTCQVYLKLP Y+SR  L+ +L  A+ EGQ HFALD
Sbjct: 2699 QIRDLVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.300e-24
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
            V+ L   +SDLD   RRQFL F TG+PRLP+GGF AL PRLT+V+K+   LPG +PD+ LPS STC  YLKLP YTS+  +  +L  AIT+G   F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKKP--LPGRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT (domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 3.900e-24
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   13 AQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVK------KEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            A V+ L   + +     RR F+RF+TG PRLP GGFGAL+P LT+V+      +E D L        LP+CSTC VYLKLPAY+S+  L AKL  AI EGQ+ FA D
Sbjct:   77 APVRALLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEADAL--------LPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2E8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.150e-23
Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   16 QVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 315
            QV+ L   MS+  T+ RR FLRFVTG PRLP+GGF +LRP LT+VK      PG   D  +P+C  C VYLKLPAYT    L  KL  AI +GQ+ F +D
Sbjct: 2811 QVQQLVSIMSEFTTQERRLFLRFVTGAPRLPMGGFASLRPPLTIVKTVPP--PGRIADEMMPTCMVCSVYLKLPAYTEPVVLRDKLHMAIRDGQESFEMD 2908          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9ZF83_9ASCO)

HSP 1 Score: 102 bits (254), Expect = 3.930e-23
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
            S     +K L   +SD     RRQFL+F+TG+PRLPIGGF AL P+LT+VKK VD   G   D HLPS  TC  YLK+P Y+ R  ++AK+  A+ EG D F L
Sbjct: 1294 SFNSTAIKHLLSIISDFSKVERRQFLQFLTGSPRLPIGGFAALNPKLTIVKKHVD--SGQKTDDHLPSVMTCANYLKMPDYSLRDIMKAKILQAMREGSDSFHL 1395          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814GCM7_9BILA)

HSP 1 Score: 102 bits (253), Expect = 5.450e-23
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
            VKWL   M D D + RR FL+FVTG+PRLP+GGF  L P LTVV+K V+      PD++LPS  TC  YLKLP YTS+  ++ KL  AI +GQ  F L
Sbjct: 2285 VKWLFEIMIDFDIDERRAFLQFVTGSPRLPVGGFRTLHPPLTVVRKTVE---NDNPDNYLPSVMTCVNYLKLPDYTSKDIMKTKLLTAIRDGQFAFLL 2379          
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Match: E3 (ubiquitin-protein ligase n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DF45_SCHJA)

HSP 1 Score: 97.8 bits (242), Expect = 6.220e-23
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   19 VKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFAL 312
            +++L   MS+   E RR F++FVTG+PRLP+GGF AL+P L +V K      G   D+HLPS  TCQ YLKLP Y+S+A + +KL +AI EGQ+ F L
Sbjct:  140 IRFLFEIMSEFTAEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKRET---GENADNHLPSVMTCQNYLKLPDYSSKALMLSKLLYAINEGQNAFHL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10398.384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
HECT6.240e-61100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
HECT5.430e-5993.33domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
HECT4.790e-3463.37domain-containing protein n=1 Tax=Tribonema minus ... [more]
HECT-type9.760e-3059.00E3 ubiquitin transferase n=1 Tax=Hondaea fermental... [more]
HECT-type1.300e-2456.12E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. C... [more]
HECT3.900e-2450.47domain-containing protein (Fragment) n=1 Tax=archa... [more]
HECT-type2.150e-2353.00E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. C... [more]
HECT-type3.930e-2350.96E3 ubiquitin transferase n=1 Tax=Metschnikowia bic... [more]
E35.450e-2354.08ubiquitin-protein ligase n=1 Tax=Didymodactylos ca... [more]
E36.220e-2351.02ubiquitin-protein ligase n=1 Tax=Schistosoma japon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10398contigEcto-sp9_F_contig10398:3347..4462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue4.7e-46
Seed eggNOG ortholog2880.D7G4E7
KEGG koko:K03874,ko:K10590
KEGG Pathwayko04120,map04120
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0170@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHECT
Ec32 orthologEc-13_002660.1
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928247.3513744-CDS-Ecto-sp9_F_contig10398:3346..34451622928247.3513744-CDS-Ecto-sp9_F_contig10398:3346..3445Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10398 3347..3445 -
1692277807.93629-CDS-Ecto-sp9_F_contig10398:3346..34451692277807.93629-CDS-Ecto-sp9_F_contig10398:3346..3445Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10398 3347..3445 -
1622928247.3654554-CDS-Ecto-sp9_F_contig10398:4243..44621622928247.3654554-CDS-Ecto-sp9_F_contig10398:4243..4462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10398 4244..4462 -
1692277807.9483984-CDS-Ecto-sp9_F_contig10398:4243..44621692277807.9483984-CDS-Ecto-sp9_F_contig10398:4243..4462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10398 4244..4462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10398.384.1prot_Ecto-sp9_F_contig10398.384.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10398 3347..4462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10398.384.1

>prot_Ecto-sp9_F_contig10398.384.1 ID=prot_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
SIPHAQVKWLARAMSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVV
KKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQD
HFALD*
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mRNA from alignment at Ecto-sp9_F_contig10398:3347..4462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10398.384.1 ID=mRNA_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1116bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10398:3347..4462- (Ectocarpus species9 EcSCA_722f female)
TCTATCCCACATGCCCAGGTGAAGTGGCTGGCGCGTGCGATGTCCGACCT CGACACTGAAGGACGTCGACAGTTCCTCCGCTTCGTTACCGGGACTCCTC GGCTGCCGATAGGGGGCTTCGGGGCCCTCCGTCCCCGCCTCACGGTGGTG AAGAAGGAGGTGGACGTGCTTCCGGGGGGCACTCCGGACAGCCACCTCCC CAGCTGCTCTACGTGCCAGGTATGCATGCAGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTATTCACATTAAAAA CCGTTCCGATCTCTCTACCCGGTACCTTCGTCTGCCCGTACTATTCTAAC ACTTGACGCCGTCGATTCCCGTGGTCACAGACTAACGTACCCAAAAATGG AGGTATACCAAAATAAAATGGAAAGCAGGCCGGCCTTCTGGTAGTAGACT TTTTTTGTCTTGCAGGATTTGTCAGCGGTTGGTCCGTTTCCATCAGGACC CCCCGTGTCCCCAGTAAACGGACCGGTGCTAGGCTTGAGGTGTTCGCAAG CCAATGTTCCTTTTTGTATTTTATTCGCAAGGAAGGTTGGGTGCCGAAAC GAGAGCCCCAGATTTCGTTTTGCCAGGATTTGACAGCGGTTGGTCCGTTT CCATGAGGACCCCGCCCCCCCAGTAAACGGCCCGGTGGTAGGCTTGGATG ACGAATACCGGTATGCTTTGAAGATCGGTATGCTTATTAGCCTACATATT ACCTTGAGTGTTTTGTTTTTGTTTTTTGGTGAAAACAACAATGCAGCTCT TCTTTCCACAGAACAATAGTTAAACAGTCCATCAAGAAGTATCTAGCGAT GTATTTCGACAGCTGTGTTGGTGGTACGAAACTGTCCGTGTGTCGAAGTC CTCTTCGGCATGAAGGCACAAGAAAAAACAGGTCGTGTCTTCAGTGGATG TAAACAAACAAACGCATCTGCCATTTTGGTGTATGTGTGTCAAATTGCGC GTCGGCATAAACAACAGGTGTACCTCAAGCTGCCCGCGTACACGTCCAGA GCGGCGCTGGAGGCCAAGCTCAAGCACGCCATCACCGAAGGACAGGACCA CTTCGCCCTCGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10398:3347..4462-

>mRNA_Ecto-sp9_F_contig10398.384.1 ID=mRNA_Ecto-sp9_F_contig10398.384.1|Name=mRNA_Ecto-sp9_F_contig10398.384.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10398:3347..4462- (Ectocarpus species9 EcSCA_722f female)
TCTATCCCACATGCCCAGGTGAAGTGGCTGGCGCGTGCGATGTCCGACCT
CGACACTGAAGGACGTCGACAGTTCCTCCGCTTCGTTACCGGGACTCCTC
GGCTGCCGATAGGGGGCTTCGGGGCCCTCCGTCCCCGCCTCACGGTGGTG
AAGAAGGAGGTGGACGTGCTTCCGGGGGGCACTCCGGACAGCCACCTCCC
CAGCTGCTCTACGTGCCAGTCTATCCCACATGCCCAGGTGAAGTGGCTGG
CGCGTGCGATGTCCGACCTCGACACTGAAGGACGTCGACAGTTCCTCCGC
TTCGTTACCGGGACTCCTCGGCTGCCGATAGGGGGCTTCGGGGCCCTCCG
TCCCCGCCTCACGGTGGTGAAGAAGGAGGTGGACGTGCTTCCGGGGGGCA
CTCCGGACAGCCACCTCCCCAGCTGCTCTACGTGCCAGGTGTACCTCAAG
CTGCCCGCGTACACGTCCAGAGCGGCGCTGGAGGCCAAGCTCAAGCACGC
CATCACCGAAGGACAGGACCACTTCGCCCTCGACTAGGTGTACCTCAAGC
TGCCCGCGTACACGTCCAGAGCGGCGCTGGAGGCCAAGCTCAAGCACGCC
ATCACCGAAGGACAGGACCACTTCGCCCTCGACTAG
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