mRNA_Ecto-sp9_F_contig1038.372.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1038.372.1
Unique NamemRNA_Ecto-sp9_F_contig1038.372.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1038.372.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1038contigEcto-sp9_F_contig1038:13260..14146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_005590.1
Exons2
Model size367
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928245.9140446-CDS-Ecto-sp9_F_contig1038:13259..134651622928245.9140446-CDS-Ecto-sp9_F_contig1038:13259..13465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 13260..13465 +
1692277807.4373248-CDS-Ecto-sp9_F_contig1038:13259..134651692277807.4373248-CDS-Ecto-sp9_F_contig1038:13259..13465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 13260..13465 +
1622928245.9400313-CDS-Ecto-sp9_F_contig1038:13986..141461622928245.9400313-CDS-Ecto-sp9_F_contig1038:13986..14146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 13987..14146 +
1692277807.4480083-CDS-Ecto-sp9_F_contig1038:13986..141461692277807.4480083-CDS-Ecto-sp9_F_contig1038:13986..14146Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 13987..14146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1038.372.1prot_Ecto-sp9_F_contig1038.372.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1038 13260..14146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1038.372.1

>prot_Ecto-sp9_F_contig1038.372.1 ID=prot_Ecto-sp9_F_contig1038.372.1|Name=mRNA_Ecto-sp9_F_contig1038.372.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
MGNEWSDTRELNKNDFKELLDEGKKRLEQAEQEQQLRESAEVVGAMGGLA
LEDLLADLREPSFSRQQNEKLRQGMAKKLRAKVARLFGRVMSQYVTGSCS
SGQVNRLFYSISRRFDLPLVVD
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mRNA from alignment at Ecto-sp9_F_contig1038:13260..14146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1038.372.1 ID=mRNA_Ecto-sp9_F_contig1038.372.1|Name=mRNA_Ecto-sp9_F_contig1038.372.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=887bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1038:13260..14146+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCAATGAATGGTCAGACACGCGAGAACTGAACAAGAACGATTTCAA
GGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAACAGGAGC
AGCAGCTCAGAGAGAGCGCTGAAGTCGTGGGGGCAATGGGTGGTTTGGCC
CTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTCTCTCGGCAGCA
AAACGAGTGAGCGTCTTTAGATCCTACTGAACTTCAGTGGTGGTAGCCGC
CTGCAGTGCGCAGCTCGCCTGCCGTGTCTCTCACGGTACAGTACACAGTT
TTCCCGACCTCTGCTACTATTGCCGAGTTAAAAGGTTTACACCAGGAGAC
CACGATATAGGTATCTTGGTAGTGACGCAAGTACAACCAGTAAAGATCCG
AAACCCTACGAACGATGTTCTCGGGGTCTGAAGATGTTTACAAAGAAAGA
TCCTCTGCCTGCTGTGACCAGCCGGAGGGTGAAAGGGTGCCCCCGAGGCT
TCCCGAGGCTCACTCTCACATTCGACCATTCTTAAACCTAGCACAGGCGA
CCAACGTCGGCTACGCTTGGCAATTCCTCGCCACATTACAATACAATAAG
AGCGAATTACCACCGCTGATGAACGGTTAGACTAATCACCACTTCAGGGA
CCCTTACTCGGTAACAGAGAACGGGTATTCTCATAGTGCGTGCTTACTAC
CATCGTTGTATTTGTCCCTCTCAACAGGAAGCTACGACAGGGCATGGCAA
AAAAACTGAGGGCTAAAGTTGCACGACTCTTCGGCCGCGTCATGAGCCAG
TACGTTACAGGGTCGTGCAGTTCAGGTCAGGTGAATCGTTTGTTTTACTC
CATCTCACGGAGATTCGACCTACCTTTGGTGGTTGAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1038:13260..14146+

>mRNA_Ecto-sp9_F_contig1038.372.1 ID=mRNA_Ecto-sp9_F_contig1038.372.1|Name=mRNA_Ecto-sp9_F_contig1038.372.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1038:13260..14146+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCAATGAATGGTCAGACACGCGAGAACTGAACAAGAACGATTTCAA
GGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAACAGGAGC
AGCAGCTCAGAGAGAGCGCTGAAGTCGTGGGGGCAATGGGTGGTTTGGCC
CTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTCTCTCGGCAGCA
AAACGAATGGGCAATGAATGGTCAGACACGCGAGAACTGAACAAGAACGA
TTTCAAGGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAAC
AGGAGCAGCAGCTCAGAGAGAGCGCTGAAGTCGTGGGGGCAATGGGTGGT
TTGGCCCTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTCTCTCG
GCAGCAAAACGAGAAGCTACGACAGGGCATGGCAAAAAAACTGAGGGCTA
AAGTTGCACGACTCTTCGGCCGCGTCATGAGCCAGTACGTTACAGGGTCG
TGCAGTTCAGGTCAGGTGAATCGTTTGTTTTACTCCATCTCACGGAGATT
CGACCTACCTTTGGTGGTTGATGAAGCTACGACAGGGCATGGCAAAAAAA
CTGAGGGCTAAAGTTGCACGACTCTTCGGCCGCGTCATGAGCCAGTACGT
TACAGGGTCGTGCAGTTCAGGTCAGGTGAATCGTTTGTTTTACTCCATCT
CACGGAGATTCGACCTACCTTTGGTGGTTGAT
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